Wall clock time and date at job start Sun Mar 29 2020 22:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.45932 * 2 1 4 4 C 1.53039 * 109.46268 * 119.95891 * 2 1 3 5 5 C 1.53194 * 109.31545 * 181.38927 * 4 2 1 6 6 N 1.46927 * 108.77081 * 305.36580 * 5 4 2 7 7 C 1.36936 * 120.62960 * 233.58771 * 6 5 4 8 8 H 1.08005 * 120.00224 * 27.68354 * 7 6 5 9 9 C 1.38813 * 119.99942 * 207.68968 * 7 6 5 10 10 N 1.31612 * 120.00267 * 17.36066 * 9 7 6 11 11 Si 1.86807 * 119.99721 * 197.36377 * 9 7 6 12 12 H 1.48496 * 109.47121 * 59.99932 * 11 9 7 13 13 H 1.48498 * 109.46900 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47180 * 299.99845 * 11 9 7 15 15 C 1.46920 * 118.74182 * 53.60625 * 6 5 4 16 16 C 1.53036 * 109.46115 * 240.03079 * 2 1 3 17 17 H 1.08999 * 109.49762 * 298.59602 * 16 2 1 18 18 N 1.46497 * 109.49835 * 58.66011 * 16 2 1 19 19 C 1.36887 * 126.39451 * 240.02432 * 18 16 2 20 20 C 1.34671 * 106.81272 * 179.97438 * 19 18 16 21 21 N 1.34122 * 108.02526 * 0.02562 * 20 19 18 22 22 C 1.30503 * 109.25507 * 359.97438 * 21 20 19 23 23 H 1.08997 * 109.47220 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47347 * 299.96808 * 1 2 3 25 25 H 1.08997 * 109.47481 * 59.97050 * 1 2 3 26 26 H 1.09006 * 109.49861 * 301.33961 * 4 2 1 27 27 H 1.09004 * 109.49963 * 61.43067 * 4 2 1 28 28 H 1.08998 * 109.58701 * 65.14710 * 5 4 2 29 29 H 1.09001 * 109.58788 * 185.58105 * 5 4 2 30 30 H 0.97000 * 120.00477 * 179.97438 * 10 9 7 31 31 H 1.09000 * 109.58737 * 186.60352 * 15 6 5 32 32 H 1.09002 * 109.58693 * 66.17956 * 15 6 5 33 33 H 1.08001 * 126.59487 * 359.97438 * 19 18 16 34 34 H 1.08004 * 125.98635 * 180.02562 * 20 19 18 35 35 H 1.07994 * 125.64921 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7206 1.2501 5 6 3.5714 -0.6883 1.2644 6 7 4.0679 -1.2487 0.0001 7 6 4.9764 -2.2732 0.0002 8 1 5.0098 -2.9654 0.8286 9 6 5.8547 -2.4221 -1.0644 10 7 6.0604 -1.4204 -1.8929 11 14 6.7446 -4.0444 -1.3211 12 1 5.7498 -5.1283 -1.5225 13 1 7.6177 -3.9459 -2.5183 14 1 7.5734 -4.3487 -0.1271 15 6 3.5713 -0.6886 -1.2642 16 6 2.0398 -0.7208 -1.2500 17 1 1.6974 -1.7555 -1.2384 18 7 1.5255 -0.0489 -2.4459 19 6 0.7348 -0.6066 -3.4141 20 6 0.4960 0.3566 -4.3246 21 7 1.1242 1.4717 -3.9236 22 6 1.7428 1.2364 -2.7989 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5133 0.8903 25 1 -0.3634 0.5143 -0.8897 26 1 1.6572 -0.2205 2.1399 27 1 1.6978 -1.7555 1.2386 28 1 3.9143 0.3412 1.3673 29 1 3.9417 -1.2842 2.0986 30 1 6.6744 -1.5243 -2.6366 31 1 3.9417 -1.2847 -2.0983 32 1 3.9142 0.3409 -1.3674 33 1 0.3721 -1.6235 -3.4424 34 1 -0.0975 0.2498 -5.2206 35 1 2.3316 1.9509 -2.2429 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156498912.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:07 Heat of formation + Delta-G solvation = 61.861251 kcal Electronic energy + Delta-G solvation = -17282.812527 eV Core-core repulsion = 14702.615393 eV Total energy + Delta-G solvation = -2580.197134 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.98803 -39.54134 -35.93370 -34.19895 -32.85602 -30.72892 -29.87094 -29.01404 -26.00286 -24.38672 -22.87447 -22.37771 -21.82296 -20.46603 -18.79630 -18.14576 -16.84215 -16.19890 -15.69114 -15.50464 -15.35067 -14.89613 -14.75953 -14.49252 -14.34457 -14.07016 -13.51226 -13.30849 -13.12645 -12.74722 -12.60422 -12.38374 -12.23253 -12.00412 -11.70745 -11.50125 -11.39818 -10.88895 -10.62272 -10.40605 -9.35309 -8.78668 -7.95302 -5.41696 1.25498 1.44595 1.46678 1.53279 1.95604 2.29243 2.47122 3.20690 3.58673 3.65534 3.85968 3.89447 3.96362 4.15573 4.21073 4.43654 4.55630 4.61309 4.67303 4.76274 4.83621 4.89231 5.05878 5.07713 5.12723 5.16261 5.31189 5.40725 5.50444 5.58584 5.60931 5.93350 6.29185 6.35930 7.05046 7.21123 7.75609 8.26290 9.10370 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024665 B = 0.009086 C = 0.007336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.960938 B = 3080.762301 C = 3815.754566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 H 0.067 0.933 4 C -0.112 4.112 5 C 0.134 3.866 6 N -0.604 5.604 7 C -0.267 4.267 8 H 0.074 0.926 9 C -0.048 4.048 10 N -0.933 5.933 11 Si 0.965 3.035 12 H -0.276 1.276 13 H -0.298 1.298 14 H -0.272 1.272 15 C 0.183 3.817 16 C 0.125 3.875 17 H 0.091 0.909 18 N -0.436 5.436 19 C -0.059 4.059 20 C -0.053 4.053 21 N -0.531 5.531 22 C 0.173 3.827 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.041 0.959 26 H 0.094 0.906 27 H 0.063 0.937 28 H 0.018 0.982 29 H 0.062 0.938 30 H 0.250 0.750 31 H 0.053 0.947 32 H 0.003 0.997 33 H 0.192 0.808 34 H 0.188 0.812 35 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.524 0.508 3.482 12.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 H 0.086 0.914 4 C -0.152 4.152 5 C 0.009 3.991 6 N -0.328 5.328 7 C -0.397 4.397 8 H 0.092 0.908 9 C -0.243 4.243 10 N -0.578 5.578 11 Si 0.793 3.207 12 H -0.202 1.202 13 H -0.224 1.224 14 H -0.198 1.198 15 C 0.055 3.945 16 C 0.020 3.980 17 H 0.109 0.891 18 N -0.117 5.117 19 C -0.193 4.193 20 C -0.200 4.200 21 N -0.250 5.250 22 C -0.110 4.110 23 H 0.077 0.923 24 H 0.093 0.907 25 H 0.060 0.940 26 H 0.112 0.888 27 H 0.082 0.918 28 H 0.036 0.964 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.021 0.979 33 H 0.209 0.791 34 H 0.205 0.795 35 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -11.339 1.176 3.102 11.815 hybrid contribution 1.053 -1.382 -0.129 1.742 sum -10.287 -0.206 2.973 10.710 Atomic orbital electron populations 1.21724 0.93271 1.02130 1.01934 1.21332 0.96790 0.99185 0.93218 0.91446 1.21962 0.95615 1.00684 0.96908 1.21213 0.93477 0.96238 0.88173 1.44196 1.48058 1.39927 1.00593 1.19503 1.09873 1.03919 1.06387 0.90819 1.25817 0.98365 1.00287 0.99877 1.70159 1.38425 1.30892 1.18330 0.85382 0.78173 0.80100 0.77094 1.20221 1.22444 1.19764 1.20696 0.87776 0.95961 0.90028 1.22300 0.96439 0.96501 0.82742 0.89126 1.45744 1.36354 1.10629 1.18949 1.23163 1.02013 1.01802 0.92351 1.22641 1.05728 0.89416 1.02255 1.70240 1.13888 1.29380 1.11538 1.24936 1.03734 0.86507 0.95795 0.92266 0.90659 0.93952 0.88763 0.91823 0.96386 0.91992 0.94130 0.92835 0.97910 0.79128 0.79528 0.78093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 9.02 71.98 0.65 -2.47 16 2 C -0.09 -2.46 2.12 -10.77 -0.02 -2.48 16 3 H 0.07 2.00 7.99 -2.38 -0.02 1.98 16 4 C -0.11 -3.17 5.36 30.67 0.16 -3.00 16 5 C 0.13 4.98 6.52 86.36 0.56 5.54 16 6 N -0.60 -28.42 2.99 -699.10 -2.09 -30.52 16 7 C -0.27 -13.99 9.58 84.03 0.81 -13.19 16 8 H 0.07 3.72 7.89 -2.91 -0.02 3.69 16 9 C -0.05 -2.58 4.91 84.86 0.42 -2.17 16 10 N -0.93 -54.46 11.19 21.65 0.24 -54.22 16 11 Si 0.96 43.76 29.59 68.60 2.03 45.79 16 12 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 13 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 14 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 15 C 0.18 8.35 4.70 86.36 0.41 8.75 16 16 C 0.12 4.34 2.47 45.07 0.11 4.45 16 17 H 0.09 3.18 8.08 -2.39 -0.02 3.16 16 18 N -0.44 -14.67 1.80 -506.16 -0.91 -15.58 16 19 C -0.06 -1.79 11.54 83.09 0.96 -0.83 16 20 C -0.05 -1.64 11.87 83.52 0.99 -0.65 16 21 N -0.53 -19.32 11.25 -200.31 -2.25 -21.58 16 22 C 0.17 6.07 11.49 180.26 2.07 8.14 16 23 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 25 H 0.04 1.09 7.57 -2.39 -0.02 1.07 16 26 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 2.24 7.93 -2.39 -0.02 2.22 16 30 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 31 H 0.05 2.89 6.04 -2.39 -0.01 2.88 16 32 H 0.00 0.14 7.80 -2.39 -0.02 0.12 16 33 H 0.19 4.59 8.06 -2.91 -0.02 4.57 16 34 H 0.19 4.61 8.06 -2.91 -0.02 4.59 16 35 H 0.20 6.50 8.06 -2.91 -0.02 6.48 16 Total: -1.00 -63.26 284.21 5.18 -58.08 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 1.05 Total: 15.92 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 7.11 Total: 2.09 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -5.02 Total: -121.89 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -63.26 5.18 -58.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156498912.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.945 kcal (2) G-P(sol) polarization free energy of solvation -63.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds