Wall clock time and date at job start Sun Mar 29 2020 22:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31855 * 1 3 3 N 1.39534 * 120.00307 * 2 1 4 4 C 1.35821 * 126.10507 * 180.28011 * 3 2 1 5 5 C 1.35324 * 107.61776 * 180.16258 * 4 3 2 6 6 C 1.50696 * 126.01670 * 179.84437 * 5 4 3 7 7 N 1.46501 * 109.47120 * 263.51770 * 6 5 4 8 8 C 1.36937 * 120.00075 * 264.75219 * 7 6 5 9 9 H 1.07994 * 119.99887 * 139.13533 * 8 7 6 10 10 C 1.38812 * 120.00008 * 319.12762 * 8 7 6 11 11 N 1.31617 * 119.99874 * 159.60316 * 10 8 7 12 12 Si 1.86795 * 120.00228 * 339.61280 * 10 8 7 13 13 H 1.48495 * 109.47409 * 95.30668 * 12 10 8 14 14 H 1.48502 * 109.47307 * 215.31015 * 12 10 8 15 15 H 1.48509 * 109.47198 * 335.30785 * 12 10 8 16 16 C 1.46500 * 119.99739 * 84.75338 * 7 6 5 17 17 C 1.53005 * 109.47229 * 269.99796 * 16 7 6 18 18 C 1.52999 * 109.47256 * 180.02562 * 17 16 7 19 19 C 1.39924 * 107.96965 * 359.58509 * 5 4 3 20 20 N 1.30870 * 108.35928 * 0.25821 * 19 5 4 21 21 H 1.08002 * 119.99656 * 359.97438 * 1 2 3 22 22 H 1.07992 * 120.00197 * 179.97438 * 1 2 3 23 23 H 1.08000 * 120.00029 * 180.02562 * 2 1 3 24 24 H 1.08003 * 126.19094 * 0.02562 * 4 3 2 25 25 H 1.09004 * 109.47303 * 143.51745 * 6 5 4 26 26 H 1.09004 * 109.47234 * 23.51763 * 6 5 4 27 27 H 0.97000 * 120.00610 * 180.02562 * 11 10 8 28 28 H 1.09004 * 109.47151 * 149.99919 * 16 7 6 29 29 H 1.08996 * 109.47678 * 30.00054 * 16 7 6 30 30 H 1.09001 * 109.46752 * 300.00259 * 17 16 7 31 31 H 1.09004 * 109.46953 * 60.00002 * 17 16 7 32 32 H 1.08998 * 109.46966 * 299.99995 * 18 17 16 33 33 H 1.09004 * 109.47146 * 60.00111 * 18 17 16 34 34 H 1.08998 * 109.46874 * 179.97438 * 18 17 16 35 35 H 1.07994 * 125.81756 * 180.23937 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3185 0.0000 0.0000 3 7 2.0163 1.2084 0.0000 4 6 3.3668 1.3527 -0.0054 5 6 3.6370 2.6787 0.0004 6 6 5.0082 3.3037 0.0008 7 7 5.3905 3.6416 1.3741 8 6 5.1770 4.9067 1.8526 9 1 4.8146 5.0490 2.8599 10 6 5.4265 6.0063 1.0430 11 7 4.8674 7.1658 1.3172 12 14 6.5556 5.8404 -0.4359 13 1 5.7436 5.5831 -1.6522 14 1 7.3277 7.0965 -0.6127 15 1 7.4933 4.7095 -0.2184 16 6 6.0012 2.6260 2.2353 17 6 4.9055 1.8770 2.9967 18 6 5.5434 0.8168 3.8967 19 6 2.4190 3.3675 -0.0001 20 7 1.4488 2.4892 -0.0003 21 1 -0.5400 0.9354 0.0004 22 1 -0.5400 -0.9352 -0.0004 23 1 1.8586 -0.9353 -0.0004 24 1 4.0935 0.5538 -0.0108 25 1 4.9951 4.2091 -0.6060 26 1 5.7289 2.5988 -0.4140 27 1 5.0414 7.9342 0.7513 28 1 6.6727 3.1081 2.9458 29 1 6.5647 1.9217 1.6234 30 1 4.3421 2.5814 3.6087 31 1 4.2340 1.3949 2.2862 32 1 6.1071 0.1125 3.2850 33 1 6.2146 1.2993 4.6071 34 1 4.7628 0.2836 4.4393 35 1 2.2999 4.4408 0.0000 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193791714.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:37 Heat of formation + Delta-G solvation = 120.401407 kcal Electronic energy + Delta-G solvation = -16829.168216 eV Core-core repulsion = 14251.509573 eV Total energy + Delta-G solvation = -2577.658642 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.84475 -36.47143 -34.48814 -32.90557 -31.44626 -30.18964 -29.42133 -25.99945 -25.17824 -22.69713 -21.93972 -20.33414 -20.04259 -19.03310 -17.14792 -16.61615 -15.21662 -14.68843 -14.34533 -14.06622 -13.98889 -13.89108 -13.14056 -12.76988 -12.49039 -12.37002 -12.01278 -11.98276 -11.69425 -11.17651 -10.93758 -10.68476 -10.61147 -10.45943 -10.14159 -9.91066 -9.85177 -9.63920 -8.63431 -8.49834 -7.66984 -6.73697 -5.97741 -3.43126 1.54553 2.91191 3.01686 3.29909 3.37943 3.49304 3.53345 4.53715 4.74945 5.12451 5.16490 5.35288 5.37074 5.61316 5.67605 5.74749 5.87893 5.96516 6.00397 6.16604 6.22044 6.36690 6.41396 6.46124 6.53157 6.55750 6.66281 6.77649 6.90207 7.10664 7.20951 7.62803 8.09658 8.15111 8.45143 9.02582 9.72853 10.16215 11.17435 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.022243 B = 0.009157 C = 0.007413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.506302 B = 3057.163502 C = 3776.372706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.086 3.914 3 N -0.343 5.343 4 C 0.032 3.968 5 C -0.203 4.203 6 C 0.201 3.799 7 N -0.597 5.597 8 C -0.264 4.264 9 H 0.075 0.925 10 C 0.039 3.961 11 N -0.900 5.900 12 Si 0.875 3.125 13 H -0.284 1.284 14 H -0.301 1.301 15 H -0.268 1.268 16 C 0.152 3.848 17 C -0.144 4.144 18 C -0.147 4.147 19 C 0.085 3.915 20 N -0.306 5.306 21 H 0.112 0.888 22 H 0.116 0.884 23 H 0.149 0.851 24 H 0.167 0.833 25 H 0.067 0.933 26 H 0.043 0.957 27 H 0.263 0.737 28 H 0.054 0.946 29 H 0.032 0.968 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.042 0.958 35 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.925 -14.206 -2.475 14.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.025 4.025 3 N -0.122 5.122 4 C -0.109 4.109 5 C -0.215 4.215 6 C 0.074 3.926 7 N -0.318 5.318 8 C -0.393 4.393 9 H 0.092 0.908 10 C -0.162 4.162 11 N -0.540 5.540 12 Si 0.705 3.295 13 H -0.212 1.212 14 H -0.229 1.229 15 H -0.192 1.192 16 C 0.026 3.974 17 C -0.184 4.184 18 C -0.205 4.205 19 C -0.103 4.103 20 N -0.125 5.125 21 H 0.130 0.870 22 H 0.134 0.866 23 H 0.167 0.833 24 H 0.184 0.816 25 H 0.084 0.916 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -3.159 -14.253 -2.495 14.811 hybrid contribution 1.328 0.065 -0.706 1.506 sum -1.831 -14.188 -3.201 14.660 Atomic orbital electron populations 1.23861 0.94581 1.03323 1.04743 1.21115 0.93783 0.85474 1.02084 1.46067 1.04339 1.04633 1.57150 1.22418 0.84890 0.98483 1.05134 1.21379 0.98941 0.91735 1.09479 1.19657 0.87885 0.97147 0.87932 1.44131 1.68962 1.08808 1.09897 1.18707 1.39364 0.80374 1.00877 0.90793 1.25537 0.97559 0.94976 0.98121 1.69864 1.42674 1.01493 1.39996 0.86920 0.82628 0.76848 0.83105 1.21208 1.22923 1.19246 1.20910 0.92904 0.90521 0.93108 1.22133 1.00134 0.97456 0.98701 1.21730 1.00169 0.98961 0.99613 1.24037 0.90010 0.99912 0.96325 1.77326 1.22562 0.87017 1.25625 0.86974 0.86578 0.83329 0.81565 0.91553 0.93845 0.92702 0.92803 0.94925 0.92386 0.92711 0.93551 0.93132 0.93929 0.79618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.67 14.35 28.83 0.41 -2.26 16 2 C 0.09 1.11 10.78 -15.94 -0.17 0.93 16 3 N -0.34 -5.74 3.80 -12.74 -0.05 -5.79 16 4 C 0.03 0.52 9.65 -16.82 -0.16 0.36 16 5 C -0.20 -3.93 5.15 -105.03 -0.54 -4.47 16 6 C 0.20 4.20 4.81 -5.20 -0.03 4.18 16 7 N -0.60 -13.66 2.01 -174.61 -0.35 -14.01 16 8 C -0.26 -7.16 9.90 -15.06 -0.15 -7.31 16 9 H 0.07 2.21 8.06 -52.49 -0.42 1.79 16 10 C 0.04 1.08 5.28 -17.43 -0.09 0.99 16 11 N -0.90 -26.74 13.97 55.49 0.78 -25.97 16 12 Si 0.88 21.48 25.08 -169.99 -4.26 17.22 16 13 H -0.28 -6.77 6.72 56.52 0.38 -6.39 16 14 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 16 C 0.15 2.95 5.71 -4.04 -0.02 2.92 16 17 C -0.14 -2.56 6.14 -26.73 -0.16 -2.72 16 18 C -0.15 -2.07 9.91 37.16 0.37 -1.70 16 19 C 0.08 1.72 11.95 -17.33 -0.21 1.52 16 20 N -0.31 -5.96 11.73 30.64 0.36 -5.60 16 21 H 0.11 1.58 7.54 -52.49 -0.40 1.19 16 22 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 23 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 24 H 0.17 2.16 8.06 -52.48 -0.42 1.74 16 25 H 0.07 1.52 3.85 -51.93 -0.20 1.32 16 26 H 0.04 0.81 7.97 -51.93 -0.41 0.40 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.05 1.08 8.04 -51.93 -0.42 0.66 16 29 H 0.03 0.57 7.94 -51.93 -0.41 0.16 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.05 0.98 5.80 -51.93 -0.30 0.68 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.19 3.84 8.06 -52.49 -0.42 3.41 16 LS Contribution 293.46 15.07 4.42 4.42 Total: -1.00 -30.66 293.46 -4.96 -35.62 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.10 Total: 1.67 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -0.75 Total: -7.56 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: 0.74 Total: -51.37 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.26 Total: 17.22 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.66 -4.96 -35.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193791714.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.020 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds