Wall clock time and date at job start Sun Mar 29 2020 22:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31855 * 1 3 3 N 1.39534 * 120.00307 * 2 1 4 4 C 1.35821 * 126.10507 * 180.28011 * 3 2 1 5 5 C 1.35324 * 107.61776 * 180.16258 * 4 3 2 6 6 C 1.50696 * 126.01670 * 179.84437 * 5 4 3 7 7 N 1.46501 * 109.47120 * 263.51770 * 6 5 4 8 8 C 1.36937 * 120.00075 * 264.75219 * 7 6 5 9 9 H 1.07994 * 119.99887 * 139.13533 * 8 7 6 10 10 C 1.38812 * 120.00008 * 319.12762 * 8 7 6 11 11 N 1.31617 * 119.99874 * 159.60316 * 10 8 7 12 12 Si 1.86795 * 120.00228 * 339.61280 * 10 8 7 13 13 H 1.48495 * 109.47409 * 95.30668 * 12 10 8 14 14 H 1.48502 * 109.47307 * 215.31015 * 12 10 8 15 15 H 1.48509 * 109.47198 * 335.30785 * 12 10 8 16 16 C 1.46500 * 119.99739 * 84.75338 * 7 6 5 17 17 C 1.53005 * 109.47229 * 269.99796 * 16 7 6 18 18 C 1.52999 * 109.47256 * 180.02562 * 17 16 7 19 19 C 1.39924 * 107.96965 * 359.58509 * 5 4 3 20 20 N 1.30870 * 108.35928 * 0.25821 * 19 5 4 21 21 H 1.08002 * 119.99656 * 359.97438 * 1 2 3 22 22 H 1.07992 * 120.00197 * 179.97438 * 1 2 3 23 23 H 1.08000 * 120.00029 * 180.02562 * 2 1 3 24 24 H 1.08003 * 126.19094 * 0.02562 * 4 3 2 25 25 H 1.09004 * 109.47303 * 143.51745 * 6 5 4 26 26 H 1.09004 * 109.47234 * 23.51763 * 6 5 4 27 27 H 0.97000 * 120.00610 * 180.02562 * 11 10 8 28 28 H 1.09004 * 109.47151 * 149.99919 * 16 7 6 29 29 H 1.08996 * 109.47678 * 30.00054 * 16 7 6 30 30 H 1.09001 * 109.46752 * 300.00259 * 17 16 7 31 31 H 1.09004 * 109.46953 * 60.00002 * 17 16 7 32 32 H 1.08998 * 109.46966 * 299.99995 * 18 17 16 33 33 H 1.09004 * 109.47146 * 60.00111 * 18 17 16 34 34 H 1.08998 * 109.46874 * 179.97438 * 18 17 16 35 35 H 1.07994 * 125.81756 * 180.23937 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3185 0.0000 0.0000 3 7 2.0163 1.2084 0.0000 4 6 3.3668 1.3527 -0.0054 5 6 3.6370 2.6787 0.0004 6 6 5.0082 3.3037 0.0008 7 7 5.3905 3.6416 1.3741 8 6 5.1770 4.9067 1.8526 9 1 4.8146 5.0490 2.8599 10 6 5.4265 6.0063 1.0430 11 7 4.8674 7.1658 1.3172 12 14 6.5556 5.8404 -0.4359 13 1 5.7436 5.5831 -1.6522 14 1 7.3277 7.0965 -0.6127 15 1 7.4933 4.7095 -0.2184 16 6 6.0012 2.6260 2.2353 17 6 4.9055 1.8770 2.9967 18 6 5.5434 0.8168 3.8967 19 6 2.4190 3.3675 -0.0001 20 7 1.4488 2.4892 -0.0003 21 1 -0.5400 0.9354 0.0004 22 1 -0.5400 -0.9352 -0.0004 23 1 1.8586 -0.9353 -0.0004 24 1 4.0935 0.5538 -0.0108 25 1 4.9951 4.2091 -0.6060 26 1 5.7289 2.5988 -0.4140 27 1 5.0414 7.9342 0.7513 28 1 6.6727 3.1081 2.9458 29 1 6.5647 1.9217 1.6234 30 1 4.3421 2.5814 3.6087 31 1 4.2340 1.3949 2.2862 32 1 6.1071 0.1125 3.2850 33 1 6.2146 1.2993 4.6071 34 1 4.7628 0.2836 4.4393 35 1 2.2999 4.4408 0.0000 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193791714.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:37 Heat of formation + Delta-G solvation = 101.504036 kcal Electronic energy + Delta-G solvation = -16829.987667 eV Core-core repulsion = 14251.509573 eV Total energy + Delta-G solvation = -2578.478094 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.21363 -38.13351 -35.66502 -34.56367 -33.26026 -31.60204 -30.79533 -27.51981 -26.90278 -23.98074 -23.56119 -21.80252 -21.50037 -20.35971 -18.71034 -18.15583 -17.09203 -16.19662 -15.78116 -15.52587 -15.42326 -15.23124 -14.64202 -14.42823 -14.09880 -13.72598 -13.62131 -13.27843 -13.02045 -12.65907 -12.50196 -12.32046 -11.99787 -11.91378 -11.84560 -11.59249 -11.45003 -11.29229 -10.58033 -9.92957 -8.99500 -8.60456 -8.12835 -5.55406 0.36937 1.37997 1.47036 1.59173 1.72271 1.81840 1.91634 2.48905 3.16814 3.58919 3.66124 4.00609 4.19135 4.27604 4.37116 4.43657 4.60886 4.68083 4.78952 4.84526 4.89900 4.98507 5.00556 5.17663 5.23188 5.28042 5.30297 5.45727 5.47552 5.65712 5.74811 6.03066 6.26602 6.48052 6.75216 7.09695 7.71706 8.14977 9.06782 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.022243 B = 0.009157 C = 0.007413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.506302 B = 3057.163502 C = 3776.372706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.060 3.940 3 N -0.339 5.339 4 C 0.063 3.937 5 C -0.234 4.234 6 C 0.202 3.798 7 N -0.608 5.608 8 C -0.249 4.249 9 H 0.025 0.975 10 C -0.017 4.017 11 N -0.952 5.952 12 Si 0.944 3.056 13 H -0.275 1.275 14 H -0.312 1.312 15 H -0.249 1.249 16 C 0.147 3.853 17 C -0.133 4.133 18 C -0.138 4.138 19 C 0.057 3.943 20 N -0.331 5.331 21 H 0.082 0.918 22 H 0.157 0.843 23 H 0.199 0.801 24 H 0.214 0.786 25 H 0.040 0.960 26 H 0.078 0.922 27 H 0.261 0.739 28 H 0.039 0.961 29 H 0.069 0.931 30 H 0.016 0.984 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.925 -18.691 -3.617 19.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.048 4.048 3 N -0.117 5.117 4 C -0.080 4.080 5 C -0.246 4.246 6 C 0.076 3.924 7 N -0.330 5.330 8 C -0.380 4.380 9 H 0.043 0.957 10 C -0.213 4.213 11 N -0.596 5.596 12 Si 0.772 3.228 13 H -0.202 1.202 14 H -0.241 1.241 15 H -0.172 1.172 16 C 0.022 3.978 17 C -0.173 4.173 18 C -0.196 4.196 19 C -0.130 4.130 20 N -0.152 5.152 21 H 0.101 0.899 22 H 0.174 0.826 23 H 0.216 0.784 24 H 0.231 0.769 25 H 0.059 0.941 26 H 0.096 0.904 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.035 0.965 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.185 -18.797 -3.640 19.270 hybrid contribution 0.814 1.297 -0.284 1.557 sum -1.371 -17.500 -3.924 17.987 Atomic orbital electron populations 1.24166 0.94699 1.03897 1.02213 1.21970 0.94443 0.85294 1.03115 1.46407 1.04924 1.04807 1.55561 1.22940 0.85338 0.98212 1.01485 1.21168 0.97583 0.93123 1.12744 1.19618 0.89683 0.96985 0.86144 1.44239 1.69751 1.07903 1.11113 1.18463 1.37678 0.82846 0.98969 0.95716 1.26147 0.99056 0.94495 1.01631 1.70011 1.44912 1.02573 1.42131 0.85809 0.80451 0.76684 0.79846 1.20158 1.24067 1.17212 1.21080 0.93363 0.90269 0.93068 1.21973 0.99356 0.97410 0.98583 1.21657 1.00500 0.98152 0.99298 1.23821 0.91423 0.99365 0.98342 1.77242 1.22916 0.88475 1.26572 0.89910 0.82556 0.78413 0.76902 0.94145 0.90369 0.92971 0.94233 0.91269 0.96538 0.92395 0.90900 0.93193 0.92839 0.82123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.28 14.35 67.01 0.96 -3.32 16 2 C 0.06 1.28 10.78 82.66 0.89 2.17 16 3 N -0.34 -10.39 3.80 -194.21 -0.74 -11.13 16 4 C 0.06 1.83 9.65 83.40 0.80 2.64 16 5 C -0.23 -8.79 5.15 -20.13 -0.10 -8.89 16 6 C 0.20 8.12 4.81 85.63 0.41 8.53 16 7 N -0.61 -27.62 2.01 -706.34 -1.42 -29.04 16 8 C -0.25 -14.10 9.90 84.03 0.83 -13.27 16 9 H 0.03 1.62 8.06 -2.91 -0.02 1.59 16 10 C -0.02 -0.99 5.28 84.86 0.45 -0.54 16 11 N -0.95 -59.80 13.97 21.65 0.30 -59.50 16 12 Si 0.94 45.29 25.08 68.60 1.72 47.01 16 13 H -0.27 -12.62 6.72 99.48 0.67 -11.95 16 14 H -0.31 -15.35 7.11 99.48 0.71 -14.64 16 15 H -0.25 -11.03 7.11 99.48 0.71 -10.32 16 16 C 0.15 5.44 5.71 86.38 0.49 5.93 16 17 C -0.13 -4.51 6.14 30.60 0.19 -4.32 16 18 C -0.14 -3.43 9.91 71.98 0.71 -2.72 16 19 C 0.06 2.38 11.95 85.24 1.02 3.40 16 20 N -0.33 -12.95 11.73 -56.97 -0.67 -13.62 16 21 H 0.08 2.23 7.54 -2.91 -0.02 2.21 16 22 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 23 H 0.20 2.22 8.06 -2.91 -0.02 2.20 16 24 H 0.21 4.08 8.06 -2.91 -0.02 4.06 16 25 H 0.04 1.83 3.85 -2.39 -0.01 1.82 16 26 H 0.08 2.58 7.97 -2.38 -0.02 2.57 16 27 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 28 H 0.04 1.55 8.04 -2.38 -0.02 1.54 16 29 H 0.07 2.09 7.94 -2.39 -0.02 2.07 16 30 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 1.90 5.80 -2.38 -0.01 1.88 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.05 1.24 8.14 -2.38 -0.02 1.23 16 34 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.16 7.32 8.06 -2.91 -0.02 7.29 16 Total: -1.00 -71.99 293.46 6.87 -65.12 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 1.01 Total: 11.54 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: 6.66 Total: -10.38 kcal Atomic # 7 Polarization: -110.77 SS G_CDS: -2.52 Total: -113.29 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.72 Total: 47.01 kcal Total: -71.99 6.87 -65.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193791714.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.624 kcal (2) G-P(sol) polarization free energy of solvation -71.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds