Wall clock time and date at job start Sun Mar 29 2020 22:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31865 * 1 3 3 N 1.39527 * 119.99729 * 2 1 4 4 C 1.35820 * 126.10035 * 179.97438 * 3 2 1 5 5 C 1.35327 * 107.61776 * 180.02562 * 4 3 2 6 6 C 1.50697 * 126.01418 * 180.02562 * 5 4 3 7 7 N 1.46890 * 109.47465 * 90.00117 * 6 5 4 8 8 C 1.46903 * 111.00059 * 293.95480 * 7 6 5 9 9 C 1.46902 * 111.00374 * 169.99557 * 7 6 5 10 10 H 1.09000 * 109.47263 * 310.00400 * 9 7 6 11 11 C 1.53006 * 109.46626 * 70.00094 * 9 7 6 12 12 C 1.50697 * 109.47181 * 189.99969 * 9 7 6 13 13 H 1.07994 * 120.00496 * 0.02562 * 12 9 7 14 14 C 1.37887 * 119.99690 * 180.02562 * 12 9 7 15 15 N 1.31507 * 120.00093 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 119.99676 * 180.02562 * 14 12 9 17 17 H 1.48506 * 109.47116 * 60.00382 * 16 14 12 18 18 H 1.48503 * 109.46756 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47119 * 300.00049 * 16 14 12 20 20 C 1.39913 * 107.96534 * 0.26707 * 5 4 3 21 21 N 1.30862 * 108.36997 * 359.55269 * 20 5 4 22 22 H 1.07994 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.08000 * 119.99907 * 180.02562 * 1 2 3 24 24 H 1.07994 * 119.99651 * 179.97438 * 2 1 3 25 25 H 1.08005 * 126.18881 * 0.04613 * 4 3 2 26 26 H 1.09002 * 109.47331 * 329.99624 * 6 5 4 27 27 H 1.09002 * 109.46783 * 210.00153 * 6 5 4 28 28 H 1.08997 * 109.46958 * 296.03813 * 8 7 6 29 29 H 1.08998 * 109.47182 * 56.04512 * 8 7 6 30 30 H 1.09004 * 109.47203 * 176.04453 * 8 7 6 31 31 H 1.09001 * 109.47002 * 179.97438 * 11 9 7 32 32 H 1.08993 * 109.46955 * 300.00347 * 11 9 7 33 33 H 1.09000 * 109.47050 * 60.00176 * 11 9 7 34 34 H 0.96999 * 120.00118 * 179.97438 * 15 14 12 35 35 H 1.08002 * 125.81231 * 179.71850 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3187 0.0000 0.0000 3 7 2.0162 1.2084 0.0000 4 6 3.3667 1.3528 0.0005 5 6 3.6369 2.6788 0.0009 6 6 5.0082 3.3037 0.0009 7 7 5.4536 3.5073 -1.3839 8 6 5.6553 2.2221 -2.0663 9 6 6.6732 4.3249 -1.4299 10 1 6.5321 5.2222 -0.8274 11 6 7.8492 3.5181 -0.8755 12 6 6.9613 4.7175 -2.8560 13 1 6.3040 4.3926 -3.6489 14 6 8.0642 5.4916 -3.1486 15 7 8.8644 5.8877 -2.1831 16 14 8.4209 5.9789 -4.9163 17 1 7.2797 6.7627 -5.4536 18 1 9.6538 6.8053 -4.9627 19 1 8.6123 4.7566 -5.7376 20 6 2.4189 3.3673 0.0068 21 7 1.4487 2.4892 0.0002 22 1 -0.5399 0.9353 -0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 1.8586 -0.9353 0.0004 25 1 4.0935 0.5538 0.0002 26 1 5.7079 2.6444 0.5146 27 1 4.9697 4.2641 0.5151 28 1 6.4618 1.6745 -1.5788 29 1 4.7371 1.6367 -2.0175 30 1 5.9167 2.4016 -3.1092 31 1 8.7542 4.1246 -0.9100 32 1 7.6407 3.2341 0.1559 33 1 7.9903 2.6208 -1.4780 34 1 9.6405 6.4320 -2.3889 35 1 2.2998 4.4408 0.0129 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193880652.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:56 Heat of formation + Delta-G solvation = 113.180823 kcal Electronic energy + Delta-G solvation = -16375.732375 eV Core-core repulsion = 13797.760624 eV Total energy + Delta-G solvation = -2577.971750 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.19191 -37.16416 -34.80197 -32.80367 -30.66337 -30.14433 -28.14395 -26.35220 -25.19046 -23.31968 -22.91187 -20.45878 -19.50147 -18.82381 -17.24125 -16.10656 -15.36605 -14.77029 -14.44796 -14.25090 -14.08643 -13.64099 -13.37160 -12.71789 -12.47190 -12.21768 -12.08410 -11.38875 -11.17913 -11.00293 -10.82995 -10.73497 -10.63381 -10.51875 -10.26686 -10.00127 -9.79494 -8.97541 -8.87160 -8.34800 -8.00362 -7.06342 -5.97453 -4.00709 1.29417 2.61849 2.76311 2.99436 3.35153 3.39189 3.42769 4.45278 4.53271 4.89042 5.06342 5.30067 5.35217 5.52608 5.55662 5.64747 5.97879 6.09252 6.15088 6.25770 6.34187 6.37285 6.51667 6.69680 6.83153 6.86042 6.92102 7.15172 7.32966 7.50551 7.74931 7.81493 7.88616 8.18215 8.42964 8.64756 9.05360 9.64156 11.09542 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.047163 B = 0.005148 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.538521 B = 5437.574000 C = 5574.069992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.081 3.919 3 N -0.339 5.339 4 C 0.045 3.955 5 C -0.193 4.193 6 C 0.125 3.875 7 N -0.530 5.530 8 C 0.035 3.965 9 C 0.211 3.789 10 H 0.039 0.961 11 C -0.172 4.172 12 C -0.497 4.497 13 H 0.061 0.939 14 C 0.058 3.942 15 N -0.896 5.896 16 Si 0.896 3.104 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.279 1.279 20 C 0.076 3.924 21 N -0.302 5.302 22 H 0.113 0.887 23 H 0.119 0.881 24 H 0.153 0.847 25 H 0.172 0.828 26 H 0.031 0.969 27 H 0.076 0.924 28 H 0.017 0.983 29 H 0.040 0.960 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.006 0.994 33 H 0.031 0.969 34 H 0.260 0.740 35 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.101 -10.324 5.373 15.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.030 4.030 3 N -0.117 5.117 4 C -0.097 4.097 5 C -0.203 4.203 6 C -0.005 4.005 7 N -0.253 5.253 8 C -0.113 4.113 9 C 0.104 3.896 10 H 0.057 0.943 11 C -0.232 4.232 12 C -0.535 4.535 13 H 0.079 0.921 14 C -0.143 4.143 15 N -0.535 5.535 16 Si 0.724 3.276 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.111 4.111 21 N -0.121 5.121 22 H 0.131 0.869 23 H 0.137 0.863 24 H 0.171 0.829 25 H 0.189 0.811 26 H 0.049 0.951 27 H 0.094 0.906 28 H 0.035 0.965 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.025 0.975 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -11.569 -10.210 5.140 16.263 hybrid contribution 1.864 -0.147 -0.571 1.955 sum -9.704 -10.357 4.570 14.910 Atomic orbital electron populations 1.23931 0.94523 1.03554 1.03572 1.21179 0.93867 0.85317 1.02615 1.46045 1.04338 1.04761 1.56534 1.22550 0.84976 0.98701 1.03436 1.20319 0.96971 0.91763 1.11284 1.20349 0.89134 0.98903 0.92078 1.62331 1.35692 1.15429 1.11896 1.22223 0.97728 0.91117 1.00261 1.19323 0.82320 0.90861 0.97049 0.94282 1.22409 1.04890 1.00374 0.95490 1.21076 1.08810 1.31213 0.92442 0.92094 1.24917 0.96145 0.96050 0.97179 1.69869 1.15337 1.36927 1.31416 0.86597 0.77493 0.78465 0.85046 1.20252 1.21442 1.20444 1.23959 0.89903 0.99863 0.97408 1.77330 1.22540 0.87063 1.25211 0.86899 0.86264 0.82941 0.81086 0.95078 0.90556 0.96505 0.94076 0.91268 0.89387 0.97450 0.95021 0.93009 0.79596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.11 14.35 28.83 0.41 -1.70 16 2 C 0.08 0.87 10.78 -15.94 -0.17 0.69 16 3 N -0.34 -4.82 3.80 -12.74 -0.05 -4.86 16 4 C 0.04 0.63 9.89 -16.82 -0.17 0.47 16 5 C -0.19 -3.08 5.00 -105.03 -0.52 -3.61 16 6 C 0.12 2.22 5.02 -4.98 -0.02 2.19 16 7 N -0.53 -11.24 4.69 -237.73 -1.12 -12.36 16 8 C 0.04 0.69 8.58 60.07 0.52 1.21 16 9 C 0.21 5.21 2.31 -68.86 -0.16 5.05 16 10 H 0.04 1.06 7.93 -51.93 -0.41 0.64 16 11 C -0.17 -4.09 8.22 37.16 0.31 -3.78 16 12 C -0.50 -13.54 7.97 -34.44 -0.27 -13.81 16 13 H 0.06 1.68 7.10 -52.49 -0.37 1.31 16 14 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 15 N -0.90 -25.35 11.32 55.43 0.63 -24.72 16 16 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.08 1.19 11.95 -17.34 -0.21 0.99 16 21 N -0.30 -4.84 11.73 30.64 0.36 -4.48 16 22 H 0.11 1.32 7.54 -52.49 -0.40 0.93 16 23 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 24 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 25 H 0.17 1.94 8.06 -52.48 -0.42 1.52 16 26 H 0.03 0.54 7.06 -51.93 -0.37 0.18 16 27 H 0.08 1.35 7.93 -51.93 -0.41 0.94 16 28 H 0.02 0.32 6.21 -51.93 -0.32 -0.01 16 29 H 0.04 0.71 6.10 -51.93 -0.32 0.40 16 30 H 0.07 1.47 6.86 -51.93 -0.36 1.11 16 31 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 32 H 0.01 0.14 6.91 -51.93 -0.36 -0.22 16 33 H 0.03 0.73 6.33 -51.93 -0.33 0.40 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.19 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 288.34 15.07 4.35 4.35 Total: -1.00 -30.23 288.34 -6.02 -36.25 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -4.78 Total: 0.28 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -0.39 Total: -10.81 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: -0.18 Total: -46.42 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.23 -6.02 -36.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193880652.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.433 kcal (2) G-P(sol) polarization free energy of solvation -30.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds