Wall clock time and date at job start Sun Mar 29 2020 22:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31865 * 1 3 3 N 1.39527 * 119.99729 * 2 1 4 4 C 1.35820 * 126.10035 * 179.97438 * 3 2 1 5 5 C 1.35327 * 107.61776 * 180.02562 * 4 3 2 6 6 C 1.50697 * 126.01418 * 180.02562 * 5 4 3 7 7 N 1.46890 * 109.47465 * 90.00117 * 6 5 4 8 8 C 1.46903 * 111.00059 * 293.95480 * 7 6 5 9 9 C 1.46902 * 111.00374 * 169.99557 * 7 6 5 10 10 H 1.09000 * 109.47263 * 310.00400 * 9 7 6 11 11 C 1.53006 * 109.46626 * 70.00094 * 9 7 6 12 12 C 1.50697 * 109.47181 * 189.99969 * 9 7 6 13 13 H 1.07994 * 120.00496 * 0.02562 * 12 9 7 14 14 C 1.37887 * 119.99690 * 180.02562 * 12 9 7 15 15 N 1.31507 * 120.00093 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 119.99676 * 180.02562 * 14 12 9 17 17 H 1.48506 * 109.47116 * 60.00382 * 16 14 12 18 18 H 1.48503 * 109.46756 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47119 * 300.00049 * 16 14 12 20 20 C 1.39913 * 107.96534 * 0.26707 * 5 4 3 21 21 N 1.30862 * 108.36997 * 359.55269 * 20 5 4 22 22 H 1.07994 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.08000 * 119.99907 * 180.02562 * 1 2 3 24 24 H 1.07994 * 119.99651 * 179.97438 * 2 1 3 25 25 H 1.08005 * 126.18881 * 0.04613 * 4 3 2 26 26 H 1.09002 * 109.47331 * 329.99624 * 6 5 4 27 27 H 1.09002 * 109.46783 * 210.00153 * 6 5 4 28 28 H 1.08997 * 109.46958 * 296.03813 * 8 7 6 29 29 H 1.08998 * 109.47182 * 56.04512 * 8 7 6 30 30 H 1.09004 * 109.47203 * 176.04453 * 8 7 6 31 31 H 1.09001 * 109.47002 * 179.97438 * 11 9 7 32 32 H 1.08993 * 109.46955 * 300.00347 * 11 9 7 33 33 H 1.09000 * 109.47050 * 60.00176 * 11 9 7 34 34 H 0.96999 * 120.00118 * 179.97438 * 15 14 12 35 35 H 1.08002 * 125.81231 * 179.71850 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3187 0.0000 0.0000 3 7 2.0162 1.2084 0.0000 4 6 3.3667 1.3528 0.0005 5 6 3.6369 2.6788 0.0009 6 6 5.0082 3.3037 0.0009 7 7 5.4536 3.5073 -1.3839 8 6 5.6553 2.2221 -2.0663 9 6 6.6732 4.3249 -1.4299 10 1 6.5321 5.2222 -0.8274 11 6 7.8492 3.5181 -0.8755 12 6 6.9613 4.7175 -2.8560 13 1 6.3040 4.3926 -3.6489 14 6 8.0642 5.4916 -3.1486 15 7 8.8644 5.8877 -2.1831 16 14 8.4209 5.9789 -4.9163 17 1 7.2797 6.7627 -5.4536 18 1 9.6538 6.8053 -4.9627 19 1 8.6123 4.7566 -5.7376 20 6 2.4189 3.3673 0.0068 21 7 1.4487 2.4892 0.0002 22 1 -0.5399 0.9353 -0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 1.8586 -0.9353 0.0004 25 1 4.0935 0.5538 0.0002 26 1 5.7079 2.6444 0.5146 27 1 4.9697 4.2641 0.5151 28 1 6.4618 1.6745 -1.5788 29 1 4.7371 1.6367 -2.0175 30 1 5.9167 2.4016 -3.1092 31 1 8.7542 4.1246 -0.9100 32 1 7.6407 3.2341 0.1559 33 1 7.9903 2.6208 -1.4780 34 1 9.6405 6.4320 -2.3889 35 1 2.2998 4.4408 0.0129 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193880652.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:56 Heat of formation + Delta-G solvation = 94.040914 kcal Electronic energy + Delta-G solvation = -16376.562343 eV Core-core repulsion = 13797.760624 eV Total energy + Delta-G solvation = -2578.801719 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.30385 -38.83431 -35.82690 -34.69368 -32.07879 -31.25536 -29.82881 -27.78554 -27.20645 -24.88618 -23.97009 -21.69939 -21.01512 -20.05710 -18.26232 -18.07670 -17.02116 -16.30752 -15.70483 -15.52881 -15.48631 -15.17359 -14.61651 -14.35383 -13.76867 -13.71797 -13.15028 -13.06742 -12.86570 -12.73519 -12.55003 -12.39132 -12.22881 -11.99692 -11.82007 -11.65937 -11.46845 -10.88100 -10.44180 -10.04524 -9.08849 -8.70224 -8.05896 -6.16253 0.32912 1.44924 1.46370 1.53735 1.65386 1.78508 1.85254 2.46953 3.22822 3.55767 3.74440 3.94752 4.17880 4.25055 4.50991 4.64316 4.71084 4.76350 4.83603 4.92288 4.94325 4.96595 5.14569 5.20756 5.23498 5.29357 5.41750 5.59425 5.71597 5.76581 5.87415 6.27991 6.38962 6.57538 6.70520 6.83270 6.97709 7.52872 8.99398 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.047163 B = 0.005148 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.538521 B = 5437.574000 C = 5574.069992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.054 3.946 3 N -0.339 5.339 4 C 0.061 3.939 5 C -0.219 4.219 6 C 0.133 3.867 7 N -0.543 5.543 8 C 0.043 3.957 9 C 0.215 3.785 10 H 0.008 0.992 11 C -0.158 4.158 12 C -0.512 4.512 13 H 0.052 0.948 14 C 0.013 3.987 15 N -0.920 5.920 16 Si 0.955 3.045 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.064 3.936 21 N -0.328 5.328 22 H 0.089 0.911 23 H 0.155 0.845 24 H 0.194 0.806 25 H 0.203 0.797 26 H 0.039 0.961 27 H 0.068 0.932 28 H 0.023 0.977 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.028 0.972 33 H 0.034 0.966 34 H 0.260 0.740 35 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.809 -12.407 5.173 17.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.054 4.054 3 N -0.117 5.117 4 C -0.082 4.082 5 C -0.230 4.230 6 C 0.005 3.995 7 N -0.267 5.267 8 C -0.105 4.105 9 C 0.108 3.892 10 H 0.026 0.974 11 C -0.217 4.217 12 C -0.551 4.551 13 H 0.070 0.930 14 C -0.186 4.186 15 N -0.560 5.560 16 Si 0.781 3.219 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.123 4.123 21 N -0.148 5.148 22 H 0.107 0.893 23 H 0.173 0.827 24 H 0.210 0.790 25 H 0.220 0.780 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -12.315 -12.311 4.945 18.102 hybrid contribution 1.948 0.418 -0.460 2.044 sum -10.368 -11.893 4.486 16.403 Atomic orbital electron populations 1.24197 0.94508 1.04137 1.01404 1.21926 0.94531 0.85275 1.03658 1.46365 1.04650 1.05156 1.55492 1.22952 0.85502 0.98694 1.01096 1.20140 0.95842 0.92790 1.14190 1.20225 0.90408 0.98956 0.89953 1.62202 1.33784 1.16259 1.14418 1.22144 0.99094 0.90519 0.98736 1.19072 0.84230 0.90662 0.95272 0.97415 1.22196 1.03087 0.99658 0.96775 1.21343 1.08779 1.31433 0.93529 0.92996 1.25634 0.96048 0.96076 1.00816 1.69994 1.15620 1.37344 1.33081 0.85659 0.77266 0.78249 0.80705 1.20106 1.21000 1.19749 1.24144 0.90019 1.00485 0.97624 1.77279 1.23152 0.88142 1.26229 0.89269 0.82744 0.78958 0.77994 0.94328 0.91396 0.95826 0.91701 0.93475 0.92191 0.95333 0.94718 0.93040 0.78956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.40 14.35 67.01 0.96 -2.44 16 2 C 0.05 0.99 10.78 82.65 0.89 1.88 16 3 N -0.34 -8.86 3.80 -194.21 -0.74 -9.59 16 4 C 0.06 1.54 9.89 83.40 0.83 2.37 16 5 C -0.22 -6.72 5.00 -20.13 -0.10 -6.82 16 6 C 0.13 4.66 5.02 85.56 0.43 5.08 16 7 N -0.54 -22.88 4.69 -906.05 -4.25 -27.13 16 8 C 0.04 1.64 8.58 127.69 1.10 2.73 16 9 C 0.21 10.77 2.31 44.17 0.10 10.87 16 10 H 0.01 0.44 7.93 -2.39 -0.02 0.42 16 11 C -0.16 -7.47 8.22 71.98 0.59 -6.88 16 12 C -0.51 -28.25 7.97 25.60 0.20 -28.05 16 13 H 0.05 2.90 7.10 -2.91 -0.02 2.87 16 14 C 0.01 0.70 5.30 84.66 0.45 1.14 16 15 N -0.92 -52.75 11.32 21.45 0.24 -52.51 16 16 Si 0.96 43.95 29.54 68.60 2.03 45.97 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 20 C 0.06 1.98 11.95 85.24 1.02 3.00 16 21 N -0.33 -10.24 11.73 -56.98 -0.67 -10.91 16 22 H 0.09 1.97 7.54 -2.91 -0.02 1.94 16 23 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 24 H 0.19 1.84 8.06 -2.91 -0.02 1.81 16 25 H 0.20 3.73 8.06 -2.91 -0.02 3.71 16 26 H 0.04 1.28 7.06 -2.39 -0.02 1.26 16 27 H 0.07 2.44 7.93 -2.39 -0.02 2.42 16 28 H 0.02 0.85 6.21 -2.39 -0.01 0.83 16 29 H 0.06 2.11 6.10 -2.39 -0.01 2.09 16 30 H 0.05 1.96 6.86 -2.39 -0.02 1.95 16 31 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 32 H 0.03 1.18 6.91 -2.39 -0.02 1.16 16 33 H 0.03 1.57 6.33 -2.39 -0.02 1.56 16 34 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 35 H 0.19 5.36 8.06 -2.91 -0.02 5.33 16 Total: -1.00 -65.31 288.34 4.15 -61.17 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 1.07 Total: 10.10 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: 6.47 Total: -17.10 kcal Atomic # 7 Polarization: -94.73 SS G_CDS: -5.41 Total: -100.14 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -65.31 4.15 -61.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193880652.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.208 kcal (2) G-P(sol) polarization free energy of solvation -65.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds