Wall clock time and date at job start Sun Mar 29 2020 22:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31854 * 1 3 3 N 1.39534 * 120.00078 * 2 1 4 4 C 1.35813 * 126.10560 * 180.27296 * 3 2 1 5 5 C 1.35326 * 107.61847 * 180.02562 * 4 3 2 6 6 C 1.50698 * 126.01526 * 179.97438 * 5 4 3 7 7 N 1.46908 * 109.47031 * 90.00511 * 6 5 4 8 8 C 1.46893 * 110.99845 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.47073 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47391 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47293 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99797 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00069 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00023 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99914 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47167 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47262 * 119.99789 * 15 13 11 18 18 H 1.48501 * 109.47269 * 239.99764 * 15 13 11 19 19 C 1.39919 * 107.97024 * 0.02562 * 5 4 3 20 20 N 1.30868 * 108.36408 * 359.71391 * 19 5 4 21 21 H 1.08002 * 120.00369 * 359.71395 * 1 2 3 22 22 H 1.07998 * 120.00179 * 179.72065 * 1 2 3 23 23 H 1.08002 * 120.00369 * 180.28605 * 2 1 3 24 24 H 1.08002 * 126.19354 * 0.02562 * 4 3 2 25 25 H 1.09000 * 109.47148 * 210.00715 * 6 5 4 26 26 H 1.09001 * 109.47353 * 330.00756 * 6 5 4 27 27 H 1.00893 * 110.99975 * 303.95509 * 7 6 5 28 28 H 1.09003 * 109.47514 * 299.99600 * 8 7 6 29 29 H 1.08997 * 109.47665 * 60.00077 * 8 7 6 30 30 H 1.09000 * 109.47098 * 300.00540 * 9 8 7 31 31 H 1.09003 * 109.46968 * 60.00211 * 9 8 7 32 32 H 1.08995 * 109.47000 * 300.00359 * 10 9 8 33 33 H 1.09003 * 109.46854 * 60.00188 * 10 9 8 34 34 H 0.97004 * 119.99887 * 180.02562 * 14 13 11 35 35 H 1.07996 * 125.81508 * 179.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3185 0.0000 0.0000 3 7 2.0162 1.2084 0.0000 4 6 3.3666 1.3528 -0.0052 5 6 3.6368 2.6789 -0.0026 6 6 5.0080 3.3038 -0.0060 7 7 5.4484 3.5108 -1.3922 8 6 6.7841 4.1205 -1.4347 9 6 7.2073 4.3206 -2.8914 10 6 8.5983 4.9562 -2.9357 11 6 9.0148 5.1539 -4.3704 12 1 8.3537 4.8556 -5.1706 13 6 10.2403 5.7146 -4.6615 14 7 11.0456 6.0773 -3.6871 15 14 10.7568 5.9589 -6.4400 16 1 9.6805 5.4715 -7.3395 17 1 10.9970 7.4026 -6.6918 18 1 12.0038 5.1965 -6.7025 19 6 2.4188 3.3675 0.0050 20 7 1.4486 2.4893 0.0007 21 1 -0.5401 0.9353 0.0047 22 1 -0.5400 -0.9353 -0.0046 23 1 1.8586 -0.9353 -0.0047 24 1 4.0935 0.5540 -0.0105 25 1 4.9715 4.2629 0.5107 26 1 5.7097 2.6432 0.5033 27 1 5.4288 2.6456 -1.9108 28 1 6.7595 5.0853 -0.9281 29 1 7.4984 3.4660 -0.9352 30 1 7.2318 3.3561 -3.3984 31 1 6.4930 4.9755 -3.3905 32 1 8.5733 5.9208 -2.4288 33 1 9.3129 4.3017 -2.4365 34 1 11.9077 6.4721 -3.8919 35 1 2.2997 4.4409 0.0091 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194290649.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:18 Heat of formation + Delta-G solvation = 87.120824 kcal Electronic energy + Delta-G solvation = -15214.283662 eV Core-core repulsion = 12635.181865 eV Total energy + Delta-G solvation = -2579.101797 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.49771 -36.56997 -35.01734 -33.50230 -31.68060 -30.68568 -29.58017 -26.47188 -24.36466 -23.23202 -22.13055 -20.72347 -20.18044 -19.43476 -17.58638 -16.28014 -15.50189 -15.29955 -14.72953 -14.59109 -14.51073 -13.97119 -13.69484 -13.43060 -12.86058 -12.43848 -12.30972 -11.66354 -11.65220 -11.38168 -11.10905 -10.87497 -10.70216 -10.54338 -10.43816 -9.65982 -9.40891 -9.25681 -9.01679 -8.38201 -8.31941 -8.06132 -5.97083 -3.98851 1.01637 2.31728 2.49316 2.61092 3.33216 3.40551 3.45343 4.25288 4.47955 4.57267 4.69381 4.80699 5.06973 5.24478 5.35695 5.38862 5.55419 5.72028 5.80282 5.86093 5.90584 6.02906 6.08958 6.36328 6.49297 6.76151 6.80863 7.02283 7.17789 7.39049 7.49481 7.67643 7.72527 7.87513 8.03934 8.47483 9.08782 9.65111 11.14441 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.057800 B = 0.003220 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.312740 B = 8693.897098 C = 8897.333714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.074 3.926 3 N -0.335 5.335 4 C 0.052 3.948 5 C -0.213 4.213 6 C 0.133 3.867 7 N -0.688 5.688 8 C 0.058 3.942 9 C -0.107 4.107 10 C 0.021 3.979 11 C -0.517 4.517 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.285 1.285 19 C 0.077 3.923 20 N -0.298 5.298 21 H 0.114 0.886 22 H 0.122 0.878 23 H 0.156 0.844 24 H 0.176 0.824 25 H 0.080 0.920 26 H 0.033 0.967 27 H 0.336 0.664 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.016 0.984 33 H 0.013 0.987 34 H 0.259 0.741 35 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.856 -11.573 9.774 22.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.036 4.036 3 N -0.112 5.112 4 C -0.090 4.090 5 C -0.224 4.224 6 C 0.003 3.997 7 N -0.319 5.319 8 C -0.070 4.070 9 C -0.145 4.145 10 C -0.016 4.016 11 C -0.556 4.556 12 H 0.074 0.926 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.111 4.111 20 N -0.117 5.117 21 H 0.132 0.868 22 H 0.140 0.860 23 H 0.173 0.827 24 H 0.193 0.807 25 H 0.098 0.902 26 H 0.051 0.949 27 H 0.154 0.846 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.032 0.968 34 H 0.069 0.931 35 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -18.294 -11.162 9.746 23.543 hybrid contribution 1.873 -0.544 -0.722 2.079 sum -16.421 -11.706 9.024 22.093 Atomic orbital electron populations 1.24004 0.94525 1.03796 1.02333 1.21219 0.93944 0.85159 1.03301 1.46091 1.04318 1.04918 1.55871 1.22605 0.85319 0.98627 1.02473 1.20184 0.96641 0.91890 1.13636 1.20182 0.89538 0.99265 0.90750 1.60589 1.28132 1.31340 1.11791 1.22141 0.86727 0.98532 0.99587 1.21621 0.99861 1.00360 0.92646 1.19074 0.89888 0.95707 0.96953 1.21307 1.01672 1.40015 0.92577 0.92632 1.25033 0.96710 0.95707 0.97140 1.69979 1.09811 1.42625 1.31251 0.86544 0.78464 0.77778 0.85275 1.19725 1.21015 1.21084 1.23969 0.89767 0.99956 0.97397 1.77392 1.22495 0.87045 1.24782 0.86807 0.85991 0.82671 0.80720 0.90163 0.94891 0.84638 0.91372 0.95793 0.93753 0.92554 0.96538 0.96824 0.93117 0.79483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.58 14.35 28.83 0.41 -1.16 16 2 C 0.07 0.61 10.78 -15.94 -0.17 0.44 16 3 N -0.33 -3.75 3.80 -12.74 -0.05 -3.80 16 4 C 0.05 0.54 11.38 -16.83 -0.19 0.35 16 5 C -0.21 -2.47 5.61 -105.03 -0.59 -3.06 16 6 C 0.13 1.59 6.17 -4.97 -0.03 1.56 16 7 N -0.69 -10.02 6.49 -115.05 -0.75 -10.76 16 8 C 0.06 1.00 5.69 -3.82 -0.02 0.98 16 9 C -0.11 -2.23 5.41 -26.73 -0.14 -2.38 16 10 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 11 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 12 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 13 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 15 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 C 0.08 0.92 11.95 -17.33 -0.21 0.72 16 20 N -0.30 -3.89 11.73 30.64 0.36 -3.53 16 21 H 0.11 1.08 7.54 -52.49 -0.40 0.69 16 22 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 23 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 24 H 0.18 1.25 8.06 -52.49 -0.42 0.82 16 25 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.34 4.69 8.72 -39.30 -0.34 4.35 16 28 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.19 1.85 8.06 -52.49 -0.42 1.42 16 LS Contribution 306.72 15.07 4.62 4.62 Total: -1.00 -32.74 306.72 -6.94 -39.68 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -5.35 Total: -0.73 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -1.49 Total: -15.86 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.30 Total: -44.61 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.74 -6.94 -39.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194290649.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.805 kcal (2) G-P(sol) polarization free energy of solvation -32.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds