Wall clock time and date at job start Sun Mar 29 2020 22:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31854 * 1 3 3 N 1.39534 * 120.00078 * 2 1 4 4 C 1.35813 * 126.10560 * 180.27296 * 3 2 1 5 5 C 1.35326 * 107.61847 * 180.02562 * 4 3 2 6 6 C 1.50698 * 126.01526 * 179.97438 * 5 4 3 7 7 N 1.46908 * 109.47031 * 90.00511 * 6 5 4 8 8 C 1.46893 * 110.99845 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.47073 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47391 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47293 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99797 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00069 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00023 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99914 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47167 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47262 * 119.99789 * 15 13 11 18 18 H 1.48501 * 109.47269 * 239.99764 * 15 13 11 19 19 C 1.39919 * 107.97024 * 0.02562 * 5 4 3 20 20 N 1.30868 * 108.36408 * 359.71391 * 19 5 4 21 21 H 1.08002 * 120.00369 * 359.71395 * 1 2 3 22 22 H 1.07998 * 120.00179 * 179.72065 * 1 2 3 23 23 H 1.08002 * 120.00369 * 180.28605 * 2 1 3 24 24 H 1.08002 * 126.19354 * 0.02562 * 4 3 2 25 25 H 1.09000 * 109.47148 * 210.00715 * 6 5 4 26 26 H 1.09001 * 109.47353 * 330.00756 * 6 5 4 27 27 H 1.00893 * 110.99975 * 303.95509 * 7 6 5 28 28 H 1.09003 * 109.47514 * 299.99600 * 8 7 6 29 29 H 1.08997 * 109.47665 * 60.00077 * 8 7 6 30 30 H 1.09000 * 109.47098 * 300.00540 * 9 8 7 31 31 H 1.09003 * 109.46968 * 60.00211 * 9 8 7 32 32 H 1.08995 * 109.47000 * 300.00359 * 10 9 8 33 33 H 1.09003 * 109.46854 * 60.00188 * 10 9 8 34 34 H 0.97004 * 119.99887 * 180.02562 * 14 13 11 35 35 H 1.07996 * 125.81508 * 179.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3185 0.0000 0.0000 3 7 2.0162 1.2084 0.0000 4 6 3.3666 1.3528 -0.0052 5 6 3.6368 2.6789 -0.0026 6 6 5.0080 3.3038 -0.0060 7 7 5.4484 3.5108 -1.3922 8 6 6.7841 4.1205 -1.4347 9 6 7.2073 4.3206 -2.8914 10 6 8.5983 4.9562 -2.9357 11 6 9.0148 5.1539 -4.3704 12 1 8.3537 4.8556 -5.1706 13 6 10.2403 5.7146 -4.6615 14 7 11.0456 6.0773 -3.6871 15 14 10.7568 5.9589 -6.4400 16 1 9.6805 5.4715 -7.3395 17 1 10.9970 7.4026 -6.6918 18 1 12.0038 5.1965 -6.7025 19 6 2.4188 3.3675 0.0050 20 7 1.4486 2.4893 0.0007 21 1 -0.5401 0.9353 0.0047 22 1 -0.5400 -0.9353 -0.0046 23 1 1.8586 -0.9353 -0.0047 24 1 4.0935 0.5540 -0.0105 25 1 4.9715 4.2629 0.5107 26 1 5.7097 2.6432 0.5033 27 1 5.4288 2.6456 -1.9108 28 1 6.7595 5.0853 -0.9281 29 1 7.4984 3.4660 -0.9352 30 1 7.2318 3.3561 -3.3984 31 1 6.4930 4.9755 -3.3905 32 1 8.5733 5.9208 -2.4288 33 1 9.3129 4.3017 -2.4365 34 1 11.9077 6.4721 -3.8919 35 1 2.2997 4.4409 0.0091 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194290649.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:18 Heat of formation + Delta-G solvation = 65.839105 kcal Electronic energy + Delta-G solvation = -15215.206506 eV Core-core repulsion = 12635.181865 eV Total energy + Delta-G solvation = -2580.024641 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.30842 -37.81700 -35.97745 -35.24736 -33.34107 -31.55991 -30.74601 -28.10916 -25.70676 -24.10426 -23.65837 -21.99323 -21.39218 -20.29781 -18.48373 -18.26482 -16.73233 -16.55572 -16.17637 -15.63513 -15.48973 -15.20254 -14.93440 -14.45928 -14.14931 -13.85804 -13.46447 -13.17241 -13.03320 -12.77222 -12.59008 -12.39398 -12.21691 -11.87415 -11.64380 -11.45369 -11.35204 -11.07141 -10.54145 -10.12654 -9.31532 -9.05964 -8.18920 -6.29578 0.30239 1.40828 1.41302 1.54845 1.61580 1.73023 1.81954 2.42320 3.14200 3.44711 3.65068 3.92280 4.14095 4.17740 4.32806 4.42961 4.51181 4.66394 4.77311 4.82723 4.89351 5.04198 5.10138 5.16571 5.23116 5.29430 5.38302 5.54779 5.68218 5.79068 5.88787 6.13803 6.30511 6.34687 6.55827 6.67408 6.87888 7.39614 8.93163 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.057800 B = 0.003220 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.312740 B = 8693.897098 C = 8897.333714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.054 3.946 3 N -0.340 5.340 4 C 0.063 3.937 5 C -0.232 4.232 6 C 0.139 3.861 7 N -0.691 5.691 8 C 0.073 3.927 9 C -0.093 4.093 10 C 0.025 3.975 11 C -0.542 4.542 12 H 0.058 0.942 13 C -0.002 4.002 14 N -0.934 5.934 15 Si 0.965 3.035 16 H -0.263 1.263 17 H -0.278 1.278 18 H -0.277 1.277 19 C 0.065 3.935 20 N -0.333 5.333 21 H 0.089 0.911 22 H 0.153 0.847 23 H 0.194 0.806 24 H 0.209 0.791 25 H 0.079 0.921 26 H 0.046 0.954 27 H 0.342 0.658 28 H 0.063 0.937 29 H 0.027 0.973 30 H 0.049 0.951 31 H 0.049 0.951 32 H -0.008 1.008 33 H -0.007 1.007 34 H 0.264 0.736 35 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.303 -13.160 9.235 23.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.055 4.055 3 N -0.118 5.118 4 C -0.080 4.080 5 C -0.243 4.243 6 C 0.010 3.990 7 N -0.322 5.322 8 C -0.056 4.056 9 C -0.131 4.131 10 C -0.013 4.013 11 C -0.580 4.580 12 H 0.076 0.924 13 C -0.199 4.199 14 N -0.574 5.574 15 Si 0.790 3.210 16 H -0.187 1.187 17 H -0.204 1.204 18 H -0.202 1.202 19 C -0.122 4.122 20 N -0.153 5.153 21 H 0.107 0.893 22 H 0.171 0.829 23 H 0.211 0.789 24 H 0.226 0.774 25 H 0.098 0.902 26 H 0.064 0.936 27 H 0.159 0.841 28 H 0.082 0.918 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.010 0.990 33 H 0.011 0.989 34 H 0.072 0.928 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -18.776 -12.762 9.215 24.502 hybrid contribution 1.942 -0.102 -0.510 2.010 sum -16.835 -12.863 8.705 22.905 Atomic orbital electron populations 1.24210 0.94665 1.04131 1.01258 1.21924 0.94501 0.85358 1.03675 1.46399 1.04892 1.05137 1.55337 1.23128 0.85539 0.99055 1.00318 1.20162 0.96033 0.92582 1.15496 1.20128 0.90067 0.99719 0.89101 1.60506 1.26106 1.31839 1.13787 1.21828 0.88316 0.98826 0.96672 1.21376 0.96499 0.99766 0.95449 1.18980 0.92499 0.94416 0.95411 1.21744 1.02178 1.40269 0.93832 0.92398 1.25985 0.96721 0.95206 1.02035 1.70102 1.10330 1.43261 1.33736 0.85398 0.78301 0.77919 0.79427 1.18698 1.20361 1.20247 1.24244 0.90057 1.00606 0.97273 1.77335 1.23533 0.88237 1.26192 0.89256 0.82909 0.78880 0.77417 0.90234 0.93572 0.84053 0.91832 0.95456 0.93226 0.93243 0.98976 0.98877 0.92769 0.78586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.76 14.35 67.01 0.96 -1.80 16 2 C 0.05 0.76 10.78 82.66 0.89 1.65 16 3 N -0.34 -7.08 3.80 -194.21 -0.74 -7.82 16 4 C 0.06 1.15 11.38 83.40 0.95 2.10 16 5 C -0.23 -5.06 5.61 -20.13 -0.11 -5.17 16 6 C 0.14 3.13 6.17 85.55 0.53 3.66 16 7 N -0.69 -19.18 6.49 -517.92 -3.36 -22.54 16 8 C 0.07 2.44 5.69 86.31 0.49 2.93 16 9 C -0.09 -3.87 5.41 30.60 0.17 -3.71 16 10 C 0.02 1.31 4.97 29.85 0.15 1.46 16 11 C -0.54 -31.46 9.11 25.60 0.23 -31.23 16 12 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 13 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 14 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 15 Si 0.97 44.79 29.54 68.60 2.03 46.81 16 16 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 C 0.06 1.54 11.95 85.24 1.02 2.56 16 20 N -0.33 -8.59 11.73 -56.98 -0.67 -9.25 16 21 H 0.09 1.68 7.54 -2.91 -0.02 1.66 16 22 H 0.15 1.05 8.06 -2.91 -0.02 1.02 16 23 H 0.19 1.10 8.06 -2.91 -0.02 1.08 16 24 H 0.21 2.19 8.06 -2.91 -0.02 2.17 16 25 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.34 8.90 8.72 -89.70 -0.78 8.12 16 28 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 32 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 33 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 34 H 0.26 15.12 8.31 -92.71 -0.77 14.34 16 35 H 0.20 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -70.82 306.72 3.55 -67.27 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.27 Total: 9.82 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 5.74 Total: -27.20 kcal Atomic # 7 Polarization: -92.22 SS G_CDS: -4.48 Total: -96.70 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -70.82 3.55 -67.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194290649.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.105 kcal (2) G-P(sol) polarization free energy of solvation -70.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds