Wall clock time and date at job start Sun Mar 29 2020 22:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99788 * 2 1 4 4 H 1.48500 * 109.46939 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47053 * 300.00097 * 3 2 1 6 6 H 1.48496 * 109.46981 * 60.00212 * 3 2 1 7 7 C 1.38810 * 120.00363 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00551 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99689 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00090 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47269 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46991 * 65.00478 * 11 10 9 13 13 C 1.52997 * 109.47592 * 59.99657 * 12 11 10 14 14 C 1.52996 * 109.47165 * 60.00300 * 13 12 11 15 15 C 1.52997 * 109.47131 * 59.99833 * 14 13 12 16 16 C 1.52997 * 109.47232 * 300.00126 * 15 14 13 17 17 C 1.52996 * 109.47165 * 59.99895 * 16 15 14 18 18 C 1.53002 * 109.47415 * 299.99873 * 16 15 14 19 19 C 1.52997 * 109.46817 * 59.99873 * 18 16 15 20 20 C 1.52997 * 109.47232 * 300.00239 * 19 18 16 21 21 H 0.97002 * 120.00534 * 0.02562 * 1 2 3 22 22 H 0.97002 * 120.00403 * 0.02562 * 9 7 2 23 23 H 1.09002 * 109.46913 * 59.99757 * 10 9 7 24 24 H 1.09001 * 109.46815 * 300.00334 * 10 9 7 25 25 H 1.08993 * 109.47194 * 304.99635 * 11 10 9 26 26 H 1.09002 * 109.46719 * 299.99711 * 12 11 10 27 27 H 1.09001 * 109.47375 * 180.02562 * 13 12 11 28 28 H 1.09000 * 109.47140 * 300.00346 * 13 12 11 29 29 H 1.08992 * 109.47534 * 180.02562 * 14 13 12 30 30 H 1.09002 * 109.47153 * 180.02562 * 15 14 13 31 31 H 1.08998 * 109.47533 * 60.00505 * 15 14 13 32 32 H 1.09000 * 109.47140 * 179.97438 * 16 15 14 33 33 H 1.09001 * 109.46993 * 60.00298 * 17 16 15 34 34 H 1.09000 * 109.47380 * 179.97438 * 17 16 15 35 35 H 1.09002 * 109.47070 * 300.00053 * 18 16 15 36 36 H 1.08996 * 109.47407 * 179.97438 * 18 16 15 37 37 H 1.09001 * 109.47289 * 180.02562 * 19 18 16 38 38 H 1.09000 * 109.47140 * 180.02562 * 20 19 18 39 39 H 1.09001 * 109.47230 * 299.99295 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 0.0001 12 6 0.2687 -4.8115 -1.3070 13 6 1.2285 -4.9617 -2.4889 14 6 1.9894 -6.2831 -2.3633 15 6 0.9952 -7.4460 -2.3626 16 6 0.0354 -7.2958 -1.1807 17 6 -0.7255 -5.9744 -1.3063 18 6 0.8306 -7.3041 0.1264 19 6 1.8248 -6.1411 0.1258 20 6 2.7847 -6.2914 -1.0562 21 1 -0.4851 0.8400 -0.0004 22 1 0.3556 -2.3881 -0.0005 23 1 2.6848 -3.7144 0.8894 24 1 2.6848 -3.7144 -0.8905 25 1 0.3802 -4.7127 0.8421 26 1 -0.2734 -3.8701 -1.3965 27 1 0.6620 -4.9555 -3.4201 28 1 1.9369 -4.1332 -2.4894 29 1 2.6735 -6.3900 -3.2050 30 1 1.5373 -8.3874 -2.2726 31 1 0.4287 -7.4403 -3.2938 32 1 -0.6732 -8.1241 -1.1805 33 1 -1.2921 -5.9686 -2.2375 34 1 -1.4096 -5.8676 -0.4645 35 1 1.3727 -8.2455 0.2160 36 1 0.1469 -7.1966 0.9684 37 1 2.3917 -6.1472 1.0568 38 1 3.4932 -5.4631 -1.0563 39 1 3.3269 -7.2327 -0.9666 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216580732.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:22 Heat of formation + Delta-G solvation = -25.073889 kcal Electronic energy + Delta-G solvation = -17836.456925 eV Core-core repulsion = 15356.030344 eV Total energy + Delta-G solvation = -2480.426581 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.21333 -35.04370 -32.64583 -32.35432 -32.24743 -30.18585 -26.62204 -25.58178 -23.95785 -22.40684 -21.12499 -21.05366 -19.95206 -17.37264 -16.62231 -14.85639 -14.77910 -14.48417 -14.19831 -13.93755 -13.51015 -13.19215 -13.01542 -12.74806 -12.69764 -12.21338 -12.06013 -11.92350 -11.31174 -11.00197 -10.81542 -10.62800 -10.54435 -10.47567 -10.44799 -10.31500 -9.95789 -9.68111 -9.31693 -9.21004 -9.17875 -8.76144 -6.81410 -5.70276 -2.97382 3.46629 3.52204 3.54437 4.63753 4.75465 4.78062 4.79128 5.34798 5.36585 5.45914 5.48377 5.52239 5.58927 5.63356 5.64475 5.65884 5.70708 5.92165 5.95093 6.01054 6.05794 6.18186 6.20198 6.26682 6.31351 6.35049 6.38272 6.40133 6.45340 6.54131 6.67879 6.71934 6.83762 6.96301 7.04074 7.13432 7.76375 8.49394 9.60262 10.21090 10.55669 11.52950 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.044081 B = 0.006534 C = 0.006400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.041359 B = 4283.999024 C = 4373.817968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.234 4.234 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.155 3.845 11 C -0.081 4.081 12 C -0.076 4.076 13 C -0.107 4.107 14 C -0.084 4.084 15 C -0.105 4.105 16 C -0.084 4.084 17 C -0.108 4.108 18 C -0.105 4.105 19 C -0.078 4.078 20 C -0.108 4.108 21 H 0.253 0.747 22 H 0.383 0.617 23 H 0.013 0.987 24 H 0.026 0.974 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.408 -16.255 -3.266 16.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.365 4.365 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.028 3.972 11 C -0.100 4.100 12 C -0.094 4.094 13 C -0.145 4.145 14 C -0.103 4.103 15 C -0.142 4.142 16 C -0.103 4.103 17 C -0.146 4.146 18 C -0.143 4.143 19 C -0.097 4.097 20 C -0.145 4.145 21 H 0.063 0.937 22 H 0.217 0.783 23 H 0.030 0.970 24 H 0.043 0.957 25 H 0.084 0.916 26 H 0.097 0.903 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.555 -16.137 -3.265 16.537 hybrid contribution 0.115 0.998 0.036 1.005 sum 1.669 -15.139 -3.229 15.569 Atomic orbital electron populations 1.69668 1.05056 1.25346 1.58301 1.24713 0.95497 0.97565 1.03417 0.86146 0.78776 0.84351 0.77127 1.20644 1.21967 1.21968 1.19289 0.91013 0.84321 1.41904 0.91303 1.42398 1.05833 0.99998 1.89292 1.20801 0.93408 0.85421 0.97581 1.21255 0.97384 0.94021 0.97360 1.20970 0.95676 0.98144 0.94639 1.21540 0.98556 0.96901 0.97485 1.21028 0.96545 0.95383 0.97330 1.21515 0.97169 0.97747 0.97802 1.21028 0.96680 0.97509 0.95074 1.21563 0.97430 0.94448 1.01137 1.21518 0.97842 0.97841 0.97081 1.21012 0.96020 0.94673 0.98011 1.21554 0.97482 1.01119 0.94379 0.93689 0.78328 0.96960 0.95666 0.91559 0.90294 0.92879 0.90861 0.91989 0.92668 0.92483 0.92083 0.92528 0.92308 0.92595 0.92273 0.91599 0.91440 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.72 13.06 55.49 0.72 -28.00 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 3 Si 0.90 22.83 29.55 -169.99 -5.02 17.81 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 7 C -0.23 -6.69 9.99 -15.06 -0.15 -6.84 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.89 5.33 -59.91 -0.32 -19.21 16 10 C 0.16 3.22 4.94 -4.04 -0.02 3.20 16 11 C -0.08 -1.39 1.97 -90.62 -0.18 -1.57 16 12 C -0.08 -1.25 2.59 -90.62 -0.24 -1.48 16 13 C -0.11 -1.66 4.92 -26.73 -0.13 -1.80 16 14 C -0.08 -1.11 3.20 -90.62 -0.29 -1.40 16 15 C -0.10 -1.23 5.19 -26.73 -0.14 -1.36 16 16 C -0.08 -1.02 3.19 -90.62 -0.29 -1.31 16 17 C -0.11 -1.50 5.19 -26.73 -0.14 -1.63 16 18 C -0.11 -1.29 5.19 -26.73 -0.14 -1.43 16 19 C -0.08 -1.10 2.72 -90.62 -0.25 -1.35 16 20 C -0.11 -1.44 4.92 -26.73 -0.13 -1.57 16 21 H 0.25 7.51 8.31 -40.82 -0.34 7.18 16 22 H 0.38 10.39 6.85 -40.82 -0.28 10.11 16 23 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.03 0.53 4.83 -51.93 -0.25 0.28 16 25 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.08 1.54 7.18 -51.93 -0.37 1.16 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 1.30 6.32 -51.93 -0.33 0.97 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.97 6.55 -51.93 -0.34 0.63 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 282.50 15.07 4.26 4.26 Total: -1.00 -29.88 282.50 -9.16 -39.04 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.61 Total: 5.22 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -2.19 Total: -19.11 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 0.41 Total: -47.20 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.88 -9.16 -39.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216580732.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.962 kcal (2) G-P(sol) polarization free energy of solvation -29.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds