Wall clock time and date at job start Sun Mar 29 2020 22:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.44814 * 2 1 4 4 C 1.53043 * 109.45779 * 240.03724 * 2 1 3 5 5 C 1.53185 * 109.31096 * 178.61505 * 4 2 1 6 6 N 1.46928 * 108.77932 * 54.63531 * 5 4 2 7 7 C 1.36928 * 120.63425 * 126.36737 * 6 5 4 8 8 H 1.08007 * 120.00254 * 331.86162 * 7 6 5 9 9 C 1.38816 * 120.00134 * 151.86688 * 7 6 5 10 10 N 1.31621 * 119.99800 * 343.06552 * 9 7 6 11 11 Si 1.86803 * 120.00007 * 163.06777 * 9 7 6 12 12 H 1.48496 * 109.47107 * 90.00048 * 11 9 7 13 13 H 1.48503 * 109.46768 * 209.99408 * 11 9 7 14 14 H 1.48498 * 109.47120 * 329.99573 * 11 9 7 15 15 C 1.46934 * 118.73474 * 306.39046 * 6 5 4 16 16 C 1.53039 * 109.45868 * 119.97021 * 2 1 3 17 17 H 1.08994 * 109.50100 * 61.42987 * 16 2 1 18 18 N 1.46504 * 109.49464 * 301.36339 * 16 2 1 19 19 C 1.36884 * 126.39121 * 119.71793 * 18 16 2 20 20 C 1.34672 * 106.81432 * 179.84208 * 19 18 16 21 21 N 1.34124 * 108.01848 * 0.42212 * 20 19 18 22 22 C 1.30495 * 109.26082 * 359.72953 * 21 20 19 23 23 H 1.09002 * 109.47298 * 300.03692 * 1 2 3 24 24 H 1.09000 * 109.47238 * 60.02637 * 1 2 3 25 25 H 1.08996 * 109.47358 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.49521 * 298.56737 * 4 2 1 27 27 H 1.09003 * 109.49682 * 58.66688 * 4 2 1 28 28 H 1.08998 * 109.59273 * 294.84824 * 5 4 2 29 29 H 1.09003 * 109.70731 * 174.49065 * 5 4 2 30 30 H 0.96999 * 119.99400 * 180.02562 * 10 9 7 31 31 H 1.08993 * 109.58802 * 293.81660 * 15 6 5 32 32 H 1.09003 * 109.70262 * 173.46079 * 15 6 5 33 33 H 1.08003 * 126.59155 * 359.97438 * 19 18 16 34 34 H 1.08000 * 125.98822 * 180.11923 * 20 19 18 35 35 H 1.07994 * 125.65226 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2502 5 6 3.5713 -0.6885 -1.2643 6 7 4.0679 -1.2489 -0.0001 7 6 4.9757 -2.2740 -0.0002 8 1 5.0033 -2.9708 -0.8249 9 6 5.8604 -2.4177 1.0598 10 7 6.0655 -1.4142 1.8865 11 14 6.7600 -4.0352 1.3129 12 1 8.0445 -4.0089 0.5684 13 1 7.0305 -4.2298 2.7600 14 1 5.9199 -5.1524 0.8116 15 6 3.5714 -0.6886 1.2642 16 6 2.0398 -0.7208 1.2500 17 1 1.6978 -1.7556 1.2383 18 7 1.5250 -0.0492 2.4459 19 6 0.7301 -0.6059 3.4113 20 6 0.4957 0.3553 4.3250 21 7 1.1225 1.4711 3.9235 22 6 1.7411 1.2363 2.7987 23 1 -0.3634 0.5144 0.8897 24 1 -0.3634 0.5134 -0.8902 25 1 -0.3634 -1.0276 0.0005 26 1 1.6977 -1.7555 -1.2384 27 1 1.6572 -0.2205 -2.1399 28 1 3.9143 0.3409 -1.3674 29 1 3.9437 -1.2830 -2.0987 30 1 6.6840 -1.5145 2.6269 31 1 3.9143 0.3408 1.3674 32 1 3.9416 -1.2825 2.0999 33 1 0.3634 -1.6214 3.4366 34 1 -0.0974 0.2480 5.2211 35 1 2.3282 1.9516 2.2421 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246873212.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:10 Heat of formation + Delta-G solvation = 76.643946 kcal Electronic energy + Delta-G solvation = -17280.568551 eV Core-core repulsion = 14701.012443 eV Total energy + Delta-G solvation = -2579.556108 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.64489 -38.04101 -34.24521 -32.72728 -31.11823 -29.31518 -28.47292 -27.44778 -24.27697 -22.88208 -21.41455 -20.97558 -20.44071 -19.01374 -17.13073 -16.55657 -15.09301 -14.69740 -14.08459 -13.99813 -13.88277 -13.44111 -13.37771 -13.13615 -12.98426 -12.54638 -12.08682 -11.82041 -11.74908 -11.06565 -10.82970 -10.78705 -10.63056 -10.33963 -10.14644 -9.97214 -9.86007 -9.51305 -8.97918 -8.63470 -8.04841 -6.87307 -5.94690 -3.39398 2.58411 3.27134 3.33781 3.37366 3.38533 3.62647 4.37536 4.92071 5.10140 5.15831 5.20580 5.23585 5.38428 5.51292 5.57319 5.76757 5.82342 5.88989 5.95513 6.04499 6.09201 6.13866 6.31578 6.37369 6.43755 6.62652 6.76041 6.84725 7.02644 7.20247 7.36286 7.65768 7.72414 8.26825 8.54417 9.02250 9.65568 10.20737 11.13703 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024705 B = 0.009071 C = 0.007327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.098256 B = 3086.133082 C = 3820.379394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.071 0.929 4 C -0.125 4.125 5 C 0.140 3.860 6 N -0.586 5.586 7 C -0.263 4.263 8 H 0.069 0.931 9 C 0.006 3.994 10 N -0.898 5.898 11 Si 0.903 3.097 12 H -0.285 1.285 13 H -0.288 1.288 14 H -0.278 1.278 15 C 0.170 3.830 16 C 0.108 3.892 17 H 0.091 0.909 18 N -0.433 5.433 19 C -0.058 4.058 20 C -0.043 4.043 21 N -0.508 5.508 22 C 0.187 3.813 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.021 0.979 29 H 0.059 0.941 30 H 0.257 0.743 31 H 0.027 0.973 32 H 0.094 0.906 33 H 0.165 0.835 34 H 0.161 0.839 35 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.775 1.192 -2.449 10.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.089 0.911 4 C -0.165 4.165 5 C 0.014 3.986 6 N -0.308 5.308 7 C -0.392 4.392 8 H 0.087 0.913 9 C -0.193 4.193 10 N -0.541 5.541 11 Si 0.732 3.268 12 H -0.211 1.211 13 H -0.214 1.214 14 H -0.203 1.203 15 C 0.043 3.957 16 C 0.004 3.996 17 H 0.109 0.891 18 N -0.113 5.113 19 C -0.193 4.193 20 C -0.192 4.192 21 N -0.227 5.227 22 C -0.096 4.096 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.039 0.961 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.113 0.887 33 H 0.182 0.818 34 H 0.178 0.822 35 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -9.564 1.854 -2.044 9.954 hybrid contribution 0.515 -1.628 -0.174 1.717 sum -9.049 0.226 -2.217 9.320 Atomic orbital electron populations 1.21845 0.95610 1.01462 1.01365 1.21368 0.95052 0.99875 0.94777 0.91108 1.22088 0.98845 1.00040 0.95540 1.21017 0.90757 0.96803 0.90033 1.43933 1.48005 1.39963 0.98932 1.19158 1.09818 1.03197 1.07017 0.91311 1.25108 0.96993 0.97562 0.99654 1.70003 1.37078 1.29060 1.17986 0.86290 0.79726 0.83451 0.77287 1.21136 1.21420 1.20342 1.21043 0.84630 0.98530 0.91527 1.22686 0.99902 0.95918 0.81118 0.89100 1.45764 1.35876 1.10741 1.18894 1.22657 1.02673 1.00755 0.93204 1.22128 1.05794 0.90032 1.01254 1.70237 1.13191 1.28083 1.11140 1.24717 1.03364 0.85967 0.95572 0.92938 0.92825 0.93013 0.92022 0.92180 0.96059 0.92245 0.93301 0.95448 0.88747 0.81782 0.82166 0.78764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.02 37.16 0.34 -1.62 16 2 C -0.09 -1.41 2.12 -90.58 -0.19 -1.60 16 3 H 0.07 1.12 7.98 -51.93 -0.41 0.70 16 4 C -0.13 -1.95 5.36 -26.61 -0.14 -2.10 16 5 C 0.14 2.69 6.52 -3.71 -0.02 2.67 16 6 N -0.59 -13.74 2.99 -172.31 -0.52 -14.25 16 7 C -0.26 -6.86 9.58 -15.06 -0.14 -7.01 16 8 H 0.07 1.76 7.89 -52.48 -0.41 1.34 16 9 C 0.01 0.17 4.92 -17.43 -0.09 0.09 16 10 N -0.90 -25.38 11.19 55.49 0.62 -24.75 16 11 Si 0.90 21.04 29.59 -169.99 -5.03 16.01 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 C 0.17 3.80 4.69 -3.70 -0.02 3.79 16 16 C 0.11 1.93 2.47 -67.81 -0.17 1.76 16 17 H 0.09 1.66 8.08 -51.93 -0.42 1.24 16 18 N -0.43 -7.44 1.80 -111.33 -0.20 -7.64 16 19 C -0.06 -0.92 11.54 -16.56 -0.19 -1.12 16 20 C -0.04 -0.71 11.87 -17.81 -0.21 -0.92 16 21 N -0.51 -9.40 11.25 -14.67 -0.17 -9.56 16 22 C 0.19 3.30 11.49 -90.38 -1.04 2.26 16 23 H 0.05 0.75 7.57 -51.93 -0.39 0.36 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.03 0.65 7.81 -51.93 -0.41 0.25 16 32 H 0.09 2.46 6.06 -51.93 -0.31 2.15 16 33 H 0.16 2.19 8.06 -52.48 -0.42 1.76 16 34 H 0.16 2.16 8.06 -52.49 -0.42 1.74 16 35 H 0.20 3.09 8.06 -52.49 -0.42 2.66 16 LS Contribution 284.24 15.07 4.28 4.28 Total: -1.00 -29.07 284.24 -8.18 -37.24 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.29 Total: 2.48 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -1.88 Total: -3.80 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.26 Total: -56.21 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.07 -8.18 -37.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246873212.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.888 kcal (2) G-P(sol) polarization free energy of solvation -29.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds