Wall clock time and date at job start Sun Mar 29 2020 22:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.44814 * 2 1 4 4 C 1.53043 * 109.45779 * 240.03724 * 2 1 3 5 5 C 1.53185 * 109.31096 * 178.61505 * 4 2 1 6 6 N 1.46928 * 108.77932 * 54.63531 * 5 4 2 7 7 C 1.36928 * 120.63425 * 126.36737 * 6 5 4 8 8 H 1.08007 * 120.00254 * 331.86162 * 7 6 5 9 9 C 1.38816 * 120.00134 * 151.86688 * 7 6 5 10 10 N 1.31621 * 119.99800 * 343.06552 * 9 7 6 11 11 Si 1.86803 * 120.00007 * 163.06777 * 9 7 6 12 12 H 1.48496 * 109.47107 * 90.00048 * 11 9 7 13 13 H 1.48503 * 109.46768 * 209.99408 * 11 9 7 14 14 H 1.48498 * 109.47120 * 329.99573 * 11 9 7 15 15 C 1.46934 * 118.73474 * 306.39046 * 6 5 4 16 16 C 1.53039 * 109.45868 * 119.97021 * 2 1 3 17 17 H 1.08994 * 109.50100 * 61.42987 * 16 2 1 18 18 N 1.46504 * 109.49464 * 301.36339 * 16 2 1 19 19 C 1.36884 * 126.39121 * 119.71793 * 18 16 2 20 20 C 1.34672 * 106.81432 * 179.84208 * 19 18 16 21 21 N 1.34124 * 108.01848 * 0.42212 * 20 19 18 22 22 C 1.30495 * 109.26082 * 359.72953 * 21 20 19 23 23 H 1.09002 * 109.47298 * 300.03692 * 1 2 3 24 24 H 1.09000 * 109.47238 * 60.02637 * 1 2 3 25 25 H 1.08996 * 109.47358 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.49521 * 298.56737 * 4 2 1 27 27 H 1.09003 * 109.49682 * 58.66688 * 4 2 1 28 28 H 1.08998 * 109.59273 * 294.84824 * 5 4 2 29 29 H 1.09003 * 109.70731 * 174.49065 * 5 4 2 30 30 H 0.96999 * 119.99400 * 180.02562 * 10 9 7 31 31 H 1.08993 * 109.58802 * 293.81660 * 15 6 5 32 32 H 1.09003 * 109.70262 * 173.46079 * 15 6 5 33 33 H 1.08003 * 126.59155 * 359.97438 * 19 18 16 34 34 H 1.08000 * 125.98822 * 180.11923 * 20 19 18 35 35 H 1.07994 * 125.65226 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2502 5 6 3.5713 -0.6885 -1.2643 6 7 4.0679 -1.2489 -0.0001 7 6 4.9757 -2.2740 -0.0002 8 1 5.0033 -2.9708 -0.8249 9 6 5.8604 -2.4177 1.0598 10 7 6.0655 -1.4142 1.8865 11 14 6.7600 -4.0352 1.3129 12 1 8.0445 -4.0089 0.5684 13 1 7.0305 -4.2298 2.7600 14 1 5.9199 -5.1524 0.8116 15 6 3.5714 -0.6886 1.2642 16 6 2.0398 -0.7208 1.2500 17 1 1.6978 -1.7556 1.2383 18 7 1.5250 -0.0492 2.4459 19 6 0.7301 -0.6059 3.4113 20 6 0.4957 0.3553 4.3250 21 7 1.1225 1.4711 3.9235 22 6 1.7411 1.2363 2.7987 23 1 -0.3634 0.5144 0.8897 24 1 -0.3634 0.5134 -0.8902 25 1 -0.3634 -1.0276 0.0005 26 1 1.6977 -1.7555 -1.2384 27 1 1.6572 -0.2205 -2.1399 28 1 3.9143 0.3409 -1.3674 29 1 3.9437 -1.2830 -2.0987 30 1 6.6840 -1.5145 2.6269 31 1 3.9143 0.3408 1.3674 32 1 3.9416 -1.2825 2.0999 33 1 0.3634 -1.6214 3.4366 34 1 -0.0974 0.2480 5.2211 35 1 2.3282 1.9516 2.2421 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246873212.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:10 Heat of formation + Delta-G solvation = 61.704851 kcal Electronic energy + Delta-G solvation = -17281.216359 eV Core-core repulsion = 14701.012443 eV Total energy + Delta-G solvation = -2580.203916 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.98819 -39.53957 -35.93218 -34.19663 -32.85577 -30.72926 -29.87096 -29.01424 -26.00360 -24.38549 -22.87533 -22.37812 -21.82339 -20.46742 -18.79718 -18.14679 -16.83893 -16.20143 -15.68737 -15.50792 -15.35150 -14.89483 -14.75524 -14.49448 -14.34313 -14.07414 -13.51116 -13.30699 -13.12632 -12.77195 -12.59694 -12.37696 -12.22221 -12.00302 -11.70438 -11.50167 -11.39723 -10.88878 -10.63063 -10.40490 -9.35265 -8.77940 -7.95544 -5.42267 1.25577 1.43679 1.45960 1.54790 1.95591 2.29277 2.46961 3.20920 3.58582 3.65637 3.86000 3.89455 3.96303 4.15660 4.21120 4.43737 4.55645 4.61370 4.67356 4.76340 4.83669 4.89254 5.05898 5.07772 5.12798 5.16282 5.31246 5.40734 5.50576 5.58660 5.61056 5.93424 6.29417 6.35992 7.05080 7.21185 7.75429 8.26394 9.10348 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.024705 B = 0.009071 C = 0.007327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.098256 B = 3086.133082 C = 3820.379394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 H 0.067 0.933 4 C -0.112 4.112 5 C 0.134 3.866 6 N -0.604 5.604 7 C -0.266 4.266 8 H 0.074 0.926 9 C -0.048 4.048 10 N -0.933 5.933 11 Si 0.964 3.036 12 H -0.283 1.283 13 H -0.297 1.297 14 H -0.266 1.266 15 C 0.183 3.817 16 C 0.125 3.875 17 H 0.091 0.909 18 N -0.436 5.436 19 C -0.059 4.059 20 C -0.053 4.053 21 N -0.531 5.531 22 C 0.173 3.827 23 H 0.041 0.959 24 H 0.074 0.926 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.094 0.906 28 H 0.018 0.982 29 H 0.062 0.938 30 H 0.249 0.751 31 H 0.003 0.997 32 H 0.053 0.947 33 H 0.192 0.808 34 H 0.188 0.812 35 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.578 0.470 -3.474 12.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 H 0.085 0.915 4 C -0.152 4.152 5 C 0.009 3.991 6 N -0.328 5.328 7 C -0.396 4.396 8 H 0.092 0.908 9 C -0.244 4.244 10 N -0.578 5.578 11 Si 0.792 3.208 12 H -0.210 1.210 13 H -0.223 1.223 14 H -0.191 1.191 15 C 0.056 3.944 16 C 0.020 3.980 17 H 0.109 0.891 18 N -0.117 5.117 19 C -0.193 4.193 20 C -0.201 4.201 21 N -0.251 5.251 22 C -0.110 4.110 23 H 0.061 0.939 24 H 0.093 0.907 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.112 0.888 28 H 0.036 0.964 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.021 0.979 32 H 0.071 0.929 33 H 0.209 0.791 34 H 0.205 0.795 35 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -11.400 1.134 -3.093 11.867 hybrid contribution 1.078 -1.361 0.132 1.741 sum -10.322 -0.227 -2.961 10.741 Atomic orbital electron populations 1.21725 0.93265 1.02137 1.01935 1.21334 0.96794 0.99181 0.93221 0.91456 1.21956 0.95597 1.00687 0.96910 1.21211 0.93477 0.96240 0.88175 1.44194 1.48096 1.39904 1.00580 1.19520 1.09601 1.03715 1.06732 0.90849 1.25834 0.98366 1.00281 0.99902 1.70168 1.38192 1.30879 1.18596 0.85325 0.78684 0.80313 0.76460 1.20974 1.22306 1.19097 1.20682 0.87770 0.95950 0.90006 1.22302 0.96425 0.96522 0.82735 0.89091 1.45746 1.36212 1.10660 1.19066 1.23164 1.01897 1.01868 0.92377 1.22642 1.05760 0.89459 1.02197 1.70236 1.13938 1.29340 1.11540 1.24933 1.03743 0.86466 0.95835 0.93949 0.90667 0.92251 0.91814 0.88767 0.96420 0.91993 0.94143 0.97929 0.92900 0.79105 0.79532 0.78099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 9.02 71.98 0.65 -2.46 16 2 C -0.09 -2.46 2.12 -10.77 -0.02 -2.48 16 3 H 0.07 2.00 7.98 -2.39 -0.02 1.98 16 4 C -0.11 -3.16 5.36 30.67 0.16 -3.00 16 5 C 0.13 4.98 6.52 86.36 0.56 5.54 16 6 N -0.60 -28.42 2.99 -699.08 -2.09 -30.51 16 7 C -0.27 -13.93 9.58 84.04 0.81 -13.12 16 8 H 0.07 3.70 7.89 -2.91 -0.02 3.68 16 9 C -0.05 -2.61 4.92 84.86 0.42 -2.19 16 10 N -0.93 -54.49 11.19 21.65 0.24 -54.24 16 11 Si 0.96 43.75 29.59 68.60 2.03 45.78 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 14 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 15 C 0.18 8.37 4.69 86.36 0.41 8.77 16 16 C 0.12 4.33 2.47 45.07 0.11 4.45 16 17 H 0.09 3.19 8.08 -2.39 -0.02 3.17 16 18 N -0.44 -14.66 1.80 -506.14 -0.91 -15.57 16 19 C -0.06 -1.78 11.54 83.09 0.96 -0.82 16 20 C -0.05 -1.65 11.87 83.52 0.99 -0.66 16 21 N -0.53 -19.33 11.25 -200.32 -2.25 -21.58 16 22 C 0.17 6.07 11.49 180.26 2.07 8.14 16 23 H 0.04 1.09 7.57 -2.39 -0.02 1.07 16 24 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 2.24 7.93 -2.39 -0.02 2.22 16 30 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 31 H 0.00 0.13 7.81 -2.39 -0.02 0.11 16 32 H 0.05 2.86 6.06 -2.39 -0.01 2.84 16 33 H 0.19 4.58 8.06 -2.91 -0.02 4.56 16 34 H 0.19 4.61 8.06 -2.91 -0.02 4.58 16 35 H 0.20 6.50 8.06 -2.91 -0.02 6.47 16 Total: -1.00 -63.37 284.24 5.18 -58.19 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 1.05 Total: 15.76 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 7.11 Total: 2.16 kcal Atomic # 7 Polarization: -116.89 SS G_CDS: -5.01 Total: -121.90 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -63.37 5.18 -58.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246873212.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.896 kcal (2) G-P(sol) polarization free energy of solvation -63.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds