Wall clock time and date at job start Sun Mar 29 2020 22:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.38121 * 120.39908 * 84.71763 * 4 2 1 6 6 C 1.39625 * 118.33204 * 179.76212 * 5 4 2 7 7 N 1.38545 * 120.53208 * 180.26139 * 6 5 4 8 8 C 1.46504 * 119.99832 * 0.25919 * 7 6 5 9 9 H 1.09006 * 109.46977 * 34.99804 * 8 7 6 10 10 C 1.52999 * 109.47124 * 274.99649 * 8 7 6 11 11 C 1.50695 * 109.46897 * 154.99738 * 8 7 6 12 12 H 1.08003 * 120.00308 * 0.02562 * 11 8 7 13 13 C 1.37878 * 120.00147 * 180.02562 * 11 8 7 14 14 N 1.31520 * 119.99677 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 120.00447 * 179.97438 * 13 11 8 16 16 H 1.48508 * 109.46966 * 60.00027 * 15 13 11 17 17 H 1.48499 * 109.47460 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47053 * 300.00373 * 15 13 11 19 19 N 1.32991 * 118.93679 * 0.52100 * 6 5 4 20 20 C 1.31749 * 120.68514 * 359.74087 * 19 6 5 21 21 N 1.31787 * 121.83580 * 359.97438 * 20 19 6 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 1.07995 * 120.83104 * 0.03245 * 5 4 2 30 30 H 0.96996 * 120.00292 * 180.25668 * 7 6 5 31 31 H 1.09003 * 109.46898 * 180.02562 * 10 8 7 32 32 H 1.08998 * 109.47113 * 300.00220 * 10 8 7 33 33 H 1.09002 * 109.46762 * 60.00356 * 10 8 7 34 34 H 0.97000 * 119.99749 * 179.97438 * 14 13 11 35 35 H 1.08000 * 119.08148 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.1620 -0.0309 -2.4259 6 6 2.6363 -0.7302 -3.5374 7 7 2.7892 -0.0921 -4.7577 8 6 2.4575 1.3290 -4.8878 9 1 2.7116 1.8475 -3.9632 10 6 0.9600 1.4801 -5.1623 11 6 3.2402 1.9249 -6.0294 12 1 3.9166 1.3069 -6.6011 13 6 3.0927 3.2592 -6.3440 14 7 2.2685 4.0117 -5.6481 15 14 4.0633 3.9982 -7.7587 16 1 3.7173 3.2921 -9.0185 17 1 3.7280 5.4388 -7.8899 18 1 5.5167 3.8510 -7.4919 19 7 2.9341 -2.0198 -3.4074 20 6 2.7899 -2.6296 -2.2485 21 7 2.3501 -1.9963 -1.1797 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.9070 1.0160 -2.4979 30 1 3.1158 -0.5862 -5.5258 31 1 0.7133 2.5374 -5.2596 32 1 0.7059 0.9615 -6.0868 33 1 0.3939 1.0490 -4.3365 34 1 2.1650 4.9505 -5.8692 35 1 3.0399 -3.6775 -2.1720 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259263730.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:18 Heat of formation + Delta-G solvation = 29.312770 kcal Electronic energy + Delta-G solvation = -16599.494972 eV Core-core repulsion = 14017.886430 eV Total energy + Delta-G solvation = -2581.608542 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.41612 -36.51552 -35.62021 -33.18821 -31.55765 -30.02367 -28.35643 -26.99856 -25.41306 -24.25219 -23.05322 -20.73365 -20.08524 -17.71923 -16.65160 -16.11696 -15.03340 -14.76124 -14.55391 -14.32498 -13.88915 -13.67537 -13.42073 -12.92344 -12.52634 -12.18393 -11.98268 -11.43258 -11.28262 -11.15337 -11.07544 -10.94464 -10.82262 -10.55126 -10.33199 -10.15423 -9.94440 -9.21777 -9.17796 -8.63140 -8.61130 -7.25107 -6.27110 -4.35704 1.63665 2.02727 3.19539 3.24507 3.26557 3.91177 4.28376 4.45581 4.47159 4.85679 5.06343 5.17027 5.31402 5.37119 5.55997 5.75142 5.83714 5.92991 5.98456 6.02139 6.19809 6.29782 6.36852 6.49383 6.55553 6.75923 6.84347 6.94092 7.26161 7.45469 7.54799 7.69843 7.93230 8.18193 8.48313 8.68877 8.92989 9.32113 10.79144 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.030006 B = 0.006736 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.922315 B = 4155.744958 C = 4714.023792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.043 4.043 3 C -0.148 4.148 4 C 0.197 3.803 5 C -0.287 4.287 6 C 0.441 3.559 7 N -0.684 5.684 8 C 0.268 3.732 9 H 0.044 0.956 10 C -0.153 4.153 11 C -0.535 4.535 12 H 0.063 0.937 13 C 0.069 3.931 14 N -0.885 5.885 15 Si 0.904 3.096 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 N -0.600 5.600 20 C 0.329 3.671 21 N -0.583 5.583 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.086 0.914 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.145 0.855 30 H 0.398 0.602 31 H 0.094 0.906 32 H 0.032 0.968 33 H 0.013 0.987 34 H 0.267 0.733 35 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.152 -5.148 7.984 9.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.062 4.062 3 C -0.206 4.206 4 C 0.056 3.944 5 C -0.316 4.316 6 C 0.195 3.805 7 N -0.309 5.309 8 C 0.166 3.834 9 H 0.062 0.938 10 C -0.212 4.212 11 C -0.573 4.573 12 H 0.081 0.919 13 C -0.135 4.135 14 N -0.523 5.523 15 Si 0.732 3.268 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.201 1.201 19 N -0.326 5.326 20 C 0.039 3.961 21 N -0.305 5.305 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.105 0.895 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.162 0.838 30 H 0.233 0.767 31 H 0.113 0.887 32 H 0.051 0.949 33 H 0.032 0.968 34 H 0.077 0.923 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -2.056 -5.588 8.000 9.973 hybrid contribution 0.457 1.044 -1.268 1.704 sum -1.599 -4.544 6.733 8.279 Atomic orbital electron populations 1.21775 0.93702 1.02050 1.02173 1.20003 0.96115 0.95475 0.94652 1.21914 1.01394 0.94768 1.02492 1.21143 0.89903 0.89538 0.93788 1.22067 1.12600 1.03330 0.93561 1.18805 0.86314 0.87808 0.87587 1.45529 1.65942 1.12453 1.06993 1.18893 0.92611 0.73808 0.98059 0.93827 1.22201 0.97241 1.04032 0.97733 1.21125 1.25322 0.95107 1.15752 0.91885 1.24858 0.95184 0.96682 0.96766 1.69854 1.35610 1.07100 1.39715 0.86449 0.80275 0.78039 0.82073 1.20038 1.21002 1.20077 1.67966 1.26652 1.09477 1.28526 1.24371 0.89593 0.99443 0.82718 1.68122 1.20054 1.09778 1.32498 0.92513 0.92227 0.92053 0.89521 0.92107 0.92445 0.91534 0.83782 0.76742 0.88725 0.94910 0.96769 0.92340 0.79943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.18 37.16 0.34 -1.37 16 2 C -0.04 -0.60 3.26 -91.77 -0.30 -0.90 16 3 C -0.15 -1.93 8.64 37.16 0.32 -1.61 16 4 C 0.20 3.39 5.81 -82.33 -0.48 2.91 16 5 C -0.29 -5.50 8.00 -39.11 -0.31 -5.82 16 6 C 0.44 9.04 7.69 -154.77 -1.19 7.85 16 7 N -0.68 -14.62 5.22 -54.90 -0.29 -14.91 16 8 C 0.27 6.35 2.26 -69.08 -0.16 6.19 16 9 H 0.04 1.11 6.52 -51.93 -0.34 0.77 16 10 C -0.15 -3.51 9.22 37.16 0.34 -3.17 16 11 C -0.53 -13.73 8.73 -34.44 -0.30 -14.03 16 12 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 13 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 14 N -0.89 -23.43 11.32 55.43 0.63 -22.80 16 15 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 N -0.60 -11.58 10.47 -13.81 -0.14 -11.72 16 20 C 0.33 5.59 12.28 -92.20 -1.13 4.46 16 21 N -0.58 -10.18 10.37 -10.88 -0.11 -10.29 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.95 6.58 -51.93 -0.34 0.60 16 29 H 0.14 2.82 4.66 -52.49 -0.24 2.58 16 30 H 0.40 8.22 8.66 -40.82 -0.35 7.86 16 31 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.01 0.29 7.72 -51.93 -0.40 -0.11 16 34 H 0.27 6.74 8.31 -40.82 -0.34 6.41 16 35 H 0.18 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 289.94 15.07 4.37 4.37 Total: -1.00 -27.17 289.94 -8.45 -35.61 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -4.92 Total: 8.43 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -2.96 Total: -3.81 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: 0.08 Total: -59.72 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.17 -8.45 -35.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259263730.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.927 kcal (2) G-P(sol) polarization free energy of solvation -27.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds