Wall clock time and date at job start Sun Mar 29 2020 22:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.38121 * 120.39908 * 84.71763 * 4 2 1 6 6 C 1.39625 * 118.33204 * 179.76212 * 5 4 2 7 7 N 1.38545 * 120.53208 * 180.26139 * 6 5 4 8 8 C 1.46504 * 119.99832 * 0.25919 * 7 6 5 9 9 H 1.09006 * 109.46977 * 34.99804 * 8 7 6 10 10 C 1.52999 * 109.47124 * 274.99649 * 8 7 6 11 11 C 1.50695 * 109.46897 * 154.99738 * 8 7 6 12 12 H 1.08003 * 120.00308 * 0.02562 * 11 8 7 13 13 C 1.37878 * 120.00147 * 180.02562 * 11 8 7 14 14 N 1.31520 * 119.99677 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 120.00447 * 179.97438 * 13 11 8 16 16 H 1.48508 * 109.46966 * 60.00027 * 15 13 11 17 17 H 1.48499 * 109.47460 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47053 * 300.00373 * 15 13 11 19 19 N 1.32991 * 118.93679 * 0.52100 * 6 5 4 20 20 C 1.31749 * 120.68514 * 359.74087 * 19 6 5 21 21 N 1.31787 * 121.83580 * 359.97438 * 20 19 6 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 1.07995 * 120.83104 * 0.03245 * 5 4 2 30 30 H 0.96996 * 120.00292 * 180.25668 * 7 6 5 31 31 H 1.09003 * 109.46898 * 180.02562 * 10 8 7 32 32 H 1.08998 * 109.47113 * 300.00220 * 10 8 7 33 33 H 1.09002 * 109.46762 * 60.00356 * 10 8 7 34 34 H 0.97000 * 119.99749 * 179.97438 * 14 13 11 35 35 H 1.08000 * 119.08148 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.1620 -0.0309 -2.4259 6 6 2.6363 -0.7302 -3.5374 7 7 2.7892 -0.0921 -4.7577 8 6 2.4575 1.3290 -4.8878 9 1 2.7116 1.8475 -3.9632 10 6 0.9600 1.4801 -5.1623 11 6 3.2402 1.9249 -6.0294 12 1 3.9166 1.3069 -6.6011 13 6 3.0927 3.2592 -6.3440 14 7 2.2685 4.0117 -5.6481 15 14 4.0633 3.9982 -7.7587 16 1 3.7173 3.2921 -9.0185 17 1 3.7280 5.4388 -7.8899 18 1 5.5167 3.8510 -7.4919 19 7 2.9341 -2.0198 -3.4074 20 6 2.7899 -2.6296 -2.2485 21 7 2.3501 -1.9963 -1.1797 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.9070 1.0160 -2.4979 30 1 3.1158 -0.5862 -5.5258 31 1 0.7133 2.5374 -5.2596 32 1 0.7059 0.9615 -6.0868 33 1 0.3939 1.0490 -4.3365 34 1 2.1650 4.9505 -5.8692 35 1 3.0399 -3.6775 -2.1720 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259263730.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:17 Heat of formation + Delta-G solvation = 14.864865 kcal Electronic energy + Delta-G solvation = -16600.121480 eV Core-core repulsion = 14017.886430 eV Total energy + Delta-G solvation = -2582.235050 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.85710 -38.14202 -36.91913 -34.97061 -33.11035 -31.54935 -30.05014 -28.04056 -27.36616 -25.62365 -24.56391 -22.39406 -21.46627 -19.35710 -18.13805 -17.85158 -16.83678 -16.25660 -15.97323 -15.70777 -15.41391 -14.98431 -14.78304 -14.39090 -14.11114 -13.82055 -13.21044 -13.02209 -12.95974 -12.77851 -12.42076 -12.38377 -12.19373 -12.16887 -11.97492 -11.71426 -11.40842 -11.12080 -10.67596 -10.52539 -10.07356 -8.87901 -8.23262 -6.38708 0.22556 0.52769 1.43521 1.43604 1.51675 2.24870 2.48382 3.02479 3.08527 3.22312 3.55255 3.90908 4.11071 4.19807 4.27746 4.50338 4.60644 4.74944 4.77131 4.82819 4.89563 4.95394 4.98978 5.00932 5.14203 5.30002 5.35002 5.40007 5.51802 5.63330 5.78536 5.88609 6.05880 6.51657 6.67141 6.91719 7.31091 7.45791 8.82203 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.030006 B = 0.006736 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.922315 B = 4155.744958 C = 4714.023792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.042 4.042 3 C -0.145 4.145 4 C 0.202 3.798 5 C -0.304 4.304 6 C 0.425 3.575 7 N -0.690 5.690 8 C 0.280 3.720 9 H 0.021 0.979 10 C -0.139 4.139 11 C -0.555 4.555 12 H 0.061 0.939 13 C 0.026 3.974 14 N -0.908 5.908 15 Si 0.965 3.035 16 H -0.270 1.270 17 H -0.280 1.280 18 H -0.274 1.274 19 N -0.611 5.611 20 C 0.328 3.672 21 N -0.584 5.584 22 H 0.054 0.946 23 H 0.045 0.955 24 H 0.089 0.911 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.134 0.866 30 H 0.399 0.601 31 H 0.075 0.925 32 H 0.030 0.970 33 H 0.024 0.976 34 H 0.268 0.732 35 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.122 -5.763 8.876 10.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.061 4.061 3 C -0.202 4.202 4 C 0.061 3.939 5 C -0.332 4.332 6 C 0.180 3.820 7 N -0.317 5.317 8 C 0.177 3.823 9 H 0.038 0.962 10 C -0.198 4.198 11 C -0.593 4.593 12 H 0.079 0.921 13 C -0.176 4.176 14 N -0.546 5.546 15 Si 0.790 3.210 16 H -0.195 1.195 17 H -0.205 1.205 18 H -0.199 1.199 19 N -0.338 5.338 20 C 0.039 3.961 21 N -0.304 5.304 22 H 0.073 0.927 23 H 0.064 0.936 24 H 0.108 0.892 25 H 0.120 0.880 26 H 0.108 0.892 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.152 0.848 30 H 0.234 0.766 31 H 0.094 0.906 32 H 0.049 0.951 33 H 0.043 0.957 34 H 0.078 0.922 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -2.027 -6.234 8.909 11.061 hybrid contribution 0.443 1.153 -1.435 1.893 sum -1.584 -5.081 7.474 9.175 Atomic orbital electron populations 1.21754 0.92333 1.02186 1.02943 1.20150 0.97123 0.95474 0.93391 1.21892 1.00849 0.94477 1.02997 1.21720 0.88311 0.89561 0.94335 1.22081 1.13844 1.03068 0.94249 1.18996 0.86962 0.88602 0.87451 1.45256 1.67183 1.11614 1.07685 1.18554 0.92592 0.74877 0.96326 0.96175 1.22008 0.97140 1.02684 0.97947 1.21428 1.25758 0.95657 1.16425 0.92061 1.25600 0.96004 0.97019 0.98926 1.69959 1.36474 1.07306 1.40829 0.85501 0.78831 0.77338 0.79319 1.19527 1.20528 1.19929 1.68012 1.27110 1.08913 1.29745 1.25232 0.88154 1.00925 0.81816 1.68270 1.19922 1.09697 1.32540 0.92668 0.93571 0.89204 0.88046 0.89228 0.93286 0.93365 0.84840 0.76616 0.90614 0.95103 0.95732 0.92221 0.75958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 9.18 71.98 0.66 -2.37 16 2 C -0.04 -1.09 3.26 -11.54 -0.04 -1.12 16 3 C -0.14 -3.59 8.64 71.98 0.62 -2.96 16 4 C 0.20 6.76 5.81 42.42 0.25 7.00 16 5 C -0.30 -11.74 8.00 22.58 0.18 -11.56 16 6 C 0.42 17.49 7.69 133.16 1.02 18.52 16 7 N -0.69 -30.08 5.22 -327.62 -1.71 -31.79 16 8 C 0.28 13.56 2.26 44.24 0.10 13.66 16 9 H 0.02 1.08 6.52 -2.38 -0.02 1.06 16 10 C -0.14 -6.50 9.22 71.98 0.66 -5.84 16 11 C -0.55 -28.87 8.73 25.60 0.22 -28.65 16 12 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 13 C 0.03 1.33 5.30 84.65 0.45 1.78 16 14 N -0.91 -48.60 11.32 21.45 0.24 -48.36 16 15 Si 0.97 41.21 29.54 68.60 2.03 43.24 16 16 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 17 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 19 N -0.61 -23.09 10.47 -197.61 -2.07 -25.15 16 20 C 0.33 10.49 12.28 180.90 2.22 12.72 16 21 N -0.58 -19.24 10.37 -188.34 -1.95 -21.20 16 22 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 25 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.05 1.37 6.58 -2.39 -0.02 1.36 16 29 H 0.13 5.42 4.66 -2.91 -0.01 5.40 16 30 H 0.40 16.78 8.66 -92.71 -0.80 15.97 16 31 H 0.08 3.84 6.07 -2.39 -0.01 3.83 16 32 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.02 1.05 7.72 -2.39 -0.02 1.03 16 34 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 35 H 0.22 5.06 8.06 -2.91 -0.02 5.03 16 Total: -1.00 -57.45 289.94 3.18 -54.27 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: 0.29 Total: 27.83 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 6.35 Total: 1.16 kcal Atomic # 7 Polarization: -121.01 SS G_CDS: -5.49 Total: -126.50 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -57.45 3.18 -54.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259263730.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.134 kcal (2) G-P(sol) polarization free energy of solvation -57.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds