Wall clock time and date at job start Sun Mar 29 2020 22:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47295 * 2 1 4 4 C 1.50701 * 109.47157 * 119.99397 * 2 1 3 5 5 C 1.38118 * 120.40610 * 275.02176 * 4 2 1 6 6 C 1.39623 * 118.33801 * 179.97438 * 5 4 2 7 7 N 1.38536 * 120.53176 * 180.29528 * 6 5 4 8 8 C 1.46504 * 120.00120 * 359.72569 * 7 6 5 9 9 H 1.08994 * 109.46904 * 324.99823 * 8 7 6 10 10 C 1.53000 * 109.46924 * 84.99785 * 8 7 6 11 11 C 1.50704 * 109.47139 * 204.99824 * 8 7 6 12 12 H 1.08000 * 120.00027 * 359.97438 * 11 8 7 13 13 C 1.37880 * 119.99684 * 180.02562 * 11 8 7 14 14 N 1.31513 * 119.99411 * 180.02562 * 13 11 8 15 15 Si 1.86795 * 120.00133 * 359.97438 * 13 11 8 16 16 H 1.48500 * 109.47215 * 90.00446 * 15 13 11 17 17 H 1.48502 * 109.47033 * 210.00337 * 15 13 11 18 18 H 1.48502 * 109.47460 * 329.99917 * 15 13 11 19 19 N 1.32994 * 118.93308 * 0.02635 * 6 5 4 20 20 C 1.31740 * 120.68799 * 359.97438 * 19 6 5 21 21 N 1.31787 * 121.83817 * 359.97438 * 20 19 6 22 22 H 1.08998 * 109.46769 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46754 * 300.00227 * 1 2 3 24 24 H 1.08990 * 109.47019 * 60.00260 * 1 2 3 25 25 H 1.08995 * 109.47474 * 239.99674 * 2 1 3 26 26 H 1.08997 * 109.47135 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.46372 * 300.00128 * 3 2 1 28 28 H 1.08995 * 109.47125 * 59.99461 * 3 2 1 29 29 H 1.08002 * 120.82959 * 359.97438 * 5 4 2 30 30 H 0.97004 * 120.00167 * 179.72193 * 7 6 5 31 31 H 1.09003 * 109.46669 * 179.97438 * 10 8 7 32 32 H 1.08995 * 109.47437 * 299.99970 * 10 8 7 33 33 H 1.09002 * 109.47113 * 60.00572 * 10 8 7 34 34 H 0.97005 * 119.99591 * 180.02562 * 14 13 11 35 35 H 1.08003 * 119.08584 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.1671 -0.0294 2.4247 6 6 2.6358 -0.7299 3.5378 7 7 2.7825 -0.0933 4.7594 8 6 2.4505 1.3277 4.8895 9 1 2.7095 1.8472 3.9670 10 6 0.9515 1.4788 5.1564 11 6 3.2273 1.9221 6.0360 12 1 3.9006 1.3033 6.6105 13 6 3.0776 3.2559 6.3520 14 7 3.7559 3.7747 7.3521 15 14 1.9125 4.3260 5.3587 16 1 0.5599 4.2852 5.9704 17 1 2.4103 5.7250 5.3512 18 1 1.8410 3.8186 3.9649 19 7 2.9341 -2.0194 3.4077 20 6 2.7903 -2.6292 2.2488 21 7 2.3494 -1.9964 1.1802 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.9161 1.0186 2.4956 30 1 3.1050 -0.5884 5.5287 31 1 0.7046 2.5360 5.2537 32 1 0.3897 1.0488 4.3273 33 1 0.6926 0.9592 6.0790 34 1 3.6503 4.7129 7.5747 35 1 3.0399 -3.6772 2.1725 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259263734.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:20 Heat of formation + Delta-G solvation = 38.880440 kcal Electronic energy + Delta-G solvation = -16700.881447 eV Core-core repulsion = 14119.687791 eV Total energy + Delta-G solvation = -2581.193657 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.56972 -36.75820 -35.78852 -33.17117 -31.79876 -30.43511 -28.96880 -27.14403 -25.35399 -24.41607 -23.22998 -20.81892 -20.24354 -17.86658 -16.92345 -16.28539 -15.36250 -14.97250 -14.62028 -14.45075 -14.08438 -13.77264 -13.41707 -13.24805 -12.93758 -12.37533 -12.24849 -12.11923 -11.68420 -11.42859 -11.22364 -10.97808 -10.95084 -10.51177 -10.35330 -10.09068 -9.76869 -9.39067 -9.33406 -8.81493 -8.74927 -7.45393 -6.32259 -4.36219 1.49396 1.88003 3.10598 3.18407 3.23578 3.73843 4.16913 4.32001 4.33551 4.72518 5.00165 5.03655 5.17701 5.22965 5.38479 5.61095 5.67875 5.78731 5.83305 5.89048 6.00053 6.08031 6.13781 6.18859 6.23778 6.32441 6.35183 6.50628 6.81933 7.01668 7.21561 7.35584 7.82749 8.21522 8.36130 8.67089 8.78551 9.25743 10.80062 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.026630 B = 0.007996 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.189813 B = 3500.706499 C = 4210.467475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.044 4.044 3 C -0.149 4.149 4 C 0.200 3.800 5 C -0.292 4.292 6 C 0.443 3.557 7 N -0.676 5.676 8 C 0.242 3.758 9 H 0.043 0.957 10 C -0.168 4.168 11 C -0.537 4.537 12 H 0.082 0.918 13 C 0.079 3.921 14 N -0.887 5.887 15 Si 0.887 3.113 16 H -0.275 1.275 17 H -0.292 1.292 18 H -0.265 1.265 19 N -0.595 5.595 20 C 0.333 3.667 21 N -0.580 5.580 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.141 0.859 30 H 0.405 0.595 31 H 0.051 0.949 32 H 0.034 0.966 33 H 0.059 0.941 34 H 0.269 0.731 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.743 -5.440 -12.377 14.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.064 4.064 3 C -0.207 4.207 4 C 0.059 3.941 5 C -0.321 4.321 6 C 0.197 3.803 7 N -0.302 5.302 8 C 0.138 3.862 9 H 0.060 0.940 10 C -0.226 4.226 11 C -0.575 4.575 12 H 0.100 0.900 13 C -0.125 4.125 14 N -0.524 5.524 15 Si 0.717 3.283 16 H -0.201 1.201 17 H -0.219 1.219 18 H -0.190 1.190 19 N -0.321 5.321 20 C 0.042 3.958 21 N -0.302 5.302 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.107 0.893 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.159 0.841 30 H 0.240 0.760 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -5.520 -5.928 -12.261 14.695 hybrid contribution -0.617 1.310 0.166 1.457 sum -6.137 -4.618 -12.094 14.327 Atomic orbital electron populations 1.21775 0.93638 1.02179 1.02127 1.20022 0.96157 0.95429 0.94754 1.21923 1.01547 0.94822 1.02360 1.21153 0.89642 0.89570 0.93715 1.22020 1.13249 1.03049 0.93786 1.18763 0.86279 0.87958 0.87347 1.45108 1.66411 1.11504 1.07219 1.19225 0.91791 0.76531 0.98622 0.93981 1.22579 0.98728 1.00537 1.00782 1.20969 1.26145 0.95805 1.14589 0.89953 1.24843 0.95495 0.97467 0.94707 1.69861 1.40752 1.14052 1.27693 0.86864 0.80802 0.79499 0.81159 1.20146 1.21897 1.19010 1.67966 1.26242 1.09298 1.28584 1.24432 0.89254 0.99524 0.82565 1.68148 1.19828 1.09712 1.32465 0.92366 0.92378 0.91962 0.89284 0.92270 0.91963 0.91877 0.84149 0.75961 0.93085 0.94680 0.92237 0.92086 0.79697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.18 37.16 0.34 -1.22 16 2 C -0.04 -0.56 3.27 -91.77 -0.30 -0.86 16 3 C -0.15 -1.77 8.64 37.16 0.32 -1.45 16 4 C 0.20 3.23 5.82 -82.32 -0.48 2.75 16 5 C -0.29 -5.22 8.00 -39.11 -0.31 -5.53 16 6 C 0.44 8.56 7.69 -154.78 -1.19 7.37 16 7 N -0.68 -13.79 5.22 -54.91 -0.29 -14.07 16 8 C 0.24 5.37 1.85 -69.08 -0.13 5.24 16 9 H 0.04 0.96 5.58 -51.93 -0.29 0.67 16 10 C -0.17 -3.44 8.93 37.16 0.33 -3.11 16 11 C -0.54 -14.10 9.31 -34.44 -0.32 -14.42 16 12 H 0.08 2.35 7.98 -52.49 -0.42 1.93 16 13 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 14 N -0.89 -25.63 13.96 55.43 0.77 -24.86 16 15 Si 0.89 20.31 24.37 -169.99 -4.14 16.16 16 16 H -0.27 -6.12 6.87 56.52 0.39 -5.73 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.27 -5.69 6.53 56.52 0.37 -5.32 16 19 N -0.59 -10.92 10.47 -13.82 -0.14 -11.06 16 20 C 0.33 5.33 12.28 -92.21 -1.13 4.20 16 21 N -0.58 -9.54 10.37 -10.88 -0.11 -9.65 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.81 6.57 -51.93 -0.34 0.47 16 29 H 0.14 2.49 4.67 -52.49 -0.24 2.25 16 30 H 0.40 8.11 8.66 -40.82 -0.35 7.76 16 31 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 32 H 0.03 0.64 7.73 -51.93 -0.40 0.24 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.19 2.24 8.06 -52.48 -0.42 1.82 16 LS Contribution 283.12 15.07 4.27 4.27 Total: -1.00 -28.68 283.12 -7.40 -36.08 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -4.78 Total: 8.15 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -2.97 Total: -5.01 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: 0.23 Total: -59.65 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.14 Total: 16.16 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.68 -7.40 -36.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259263734.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.957 kcal (2) G-P(sol) polarization free energy of solvation -28.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds