Wall clock time and date at job start Sun Mar 29 2020 22:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47295 * 2 1 4 4 C 1.50701 * 109.47157 * 119.99397 * 2 1 3 5 5 C 1.38118 * 120.40610 * 275.02176 * 4 2 1 6 6 C 1.39623 * 118.33801 * 179.97438 * 5 4 2 7 7 N 1.38536 * 120.53176 * 180.29528 * 6 5 4 8 8 C 1.46504 * 120.00120 * 359.72569 * 7 6 5 9 9 H 1.08994 * 109.46904 * 324.99823 * 8 7 6 10 10 C 1.53000 * 109.46924 * 84.99785 * 8 7 6 11 11 C 1.50704 * 109.47139 * 204.99824 * 8 7 6 12 12 H 1.08000 * 120.00027 * 359.97438 * 11 8 7 13 13 C 1.37880 * 119.99684 * 180.02562 * 11 8 7 14 14 N 1.31513 * 119.99411 * 180.02562 * 13 11 8 15 15 Si 1.86795 * 120.00133 * 359.97438 * 13 11 8 16 16 H 1.48500 * 109.47215 * 90.00446 * 15 13 11 17 17 H 1.48502 * 109.47033 * 210.00337 * 15 13 11 18 18 H 1.48502 * 109.47460 * 329.99917 * 15 13 11 19 19 N 1.32994 * 118.93308 * 0.02635 * 6 5 4 20 20 C 1.31740 * 120.68799 * 359.97438 * 19 6 5 21 21 N 1.31787 * 121.83817 * 359.97438 * 20 19 6 22 22 H 1.08998 * 109.46769 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46754 * 300.00227 * 1 2 3 24 24 H 1.08990 * 109.47019 * 60.00260 * 1 2 3 25 25 H 1.08995 * 109.47474 * 239.99674 * 2 1 3 26 26 H 1.08997 * 109.47135 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.46372 * 300.00128 * 3 2 1 28 28 H 1.08995 * 109.47125 * 59.99461 * 3 2 1 29 29 H 1.08002 * 120.82959 * 359.97438 * 5 4 2 30 30 H 0.97004 * 120.00167 * 179.72193 * 7 6 5 31 31 H 1.09003 * 109.46669 * 179.97438 * 10 8 7 32 32 H 1.08995 * 109.47437 * 299.99970 * 10 8 7 33 33 H 1.09002 * 109.47113 * 60.00572 * 10 8 7 34 34 H 0.97005 * 119.99591 * 180.02562 * 14 13 11 35 35 H 1.08003 * 119.08584 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.1671 -0.0294 2.4247 6 6 2.6358 -0.7299 3.5378 7 7 2.7825 -0.0933 4.7594 8 6 2.4505 1.3277 4.8895 9 1 2.7095 1.8472 3.9670 10 6 0.9515 1.4788 5.1564 11 6 3.2273 1.9221 6.0360 12 1 3.9006 1.3033 6.6105 13 6 3.0776 3.2559 6.3520 14 7 3.7559 3.7747 7.3521 15 14 1.9125 4.3260 5.3587 16 1 0.5599 4.2852 5.9704 17 1 2.4103 5.7250 5.3512 18 1 1.8410 3.8186 3.9649 19 7 2.9341 -2.0194 3.4077 20 6 2.7903 -2.6292 2.2488 21 7 2.3494 -1.9964 1.1802 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.9161 1.0186 2.4956 30 1 3.1050 -0.5884 5.5287 31 1 0.7046 2.5360 5.2537 32 1 0.3897 1.0488 4.3273 33 1 0.6926 0.9592 6.0790 34 1 3.6503 4.7129 7.5747 35 1 3.0399 -3.6772 2.1725 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259263734.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:20 Heat of formation + Delta-G solvation = 21.178292 kcal Electronic energy + Delta-G solvation = -16701.649070 eV Core-core repulsion = 14119.687791 eV Total energy + Delta-G solvation = -2581.961279 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.90515 -38.30364 -36.95447 -34.95185 -33.38099 -31.87689 -30.46226 -28.04250 -27.26714 -25.67313 -24.64599 -22.39089 -21.50677 -19.49505 -18.40475 -17.89664 -17.07615 -16.34142 -15.96276 -15.70845 -15.52880 -14.98054 -14.87741 -14.80294 -14.16748 -14.03871 -13.78922 -13.40561 -13.01471 -12.75613 -12.43566 -12.29949 -12.16433 -12.01238 -11.78035 -11.57772 -11.42840 -11.26543 -10.87298 -10.62101 -10.09420 -8.96829 -8.39536 -6.48727 0.19625 0.49133 1.30405 1.35154 1.45594 2.21876 2.25570 2.94487 3.01672 3.20555 3.51872 3.84190 4.09728 4.17955 4.26678 4.30123 4.44997 4.54664 4.61806 4.69918 4.75813 4.82524 4.85446 4.95896 5.00384 5.15830 5.30588 5.35416 5.37780 5.39851 5.49603 5.82283 6.07068 6.51100 6.56217 6.76575 7.17536 7.42050 8.76462 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.026630 B = 0.007996 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.189813 B = 3500.706499 C = 4210.467475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.044 4.044 3 C -0.147 4.147 4 C 0.204 3.796 5 C -0.305 4.305 6 C 0.426 3.574 7 N -0.687 5.687 8 C 0.253 3.747 9 H 0.043 0.957 10 C -0.162 4.162 11 C -0.543 4.543 12 H 0.042 0.958 13 C 0.024 3.976 14 N -0.938 5.938 15 Si 0.946 3.054 16 H -0.261 1.261 17 H -0.294 1.294 18 H -0.239 1.239 19 N -0.611 5.611 20 C 0.331 3.669 21 N -0.582 5.582 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.088 0.912 25 H 0.099 0.901 26 H 0.049 0.951 27 H 0.089 0.911 28 H 0.052 0.948 29 H 0.141 0.859 30 H 0.401 0.599 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.271 0.729 35 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.470 -5.572 -15.118 17.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.063 4.063 3 C -0.205 4.205 4 C 0.062 3.938 5 C -0.333 4.333 6 C 0.182 3.818 7 N -0.314 5.314 8 C 0.148 3.852 9 H 0.060 0.940 10 C -0.220 4.220 11 C -0.581 4.581 12 H 0.060 0.940 13 C -0.176 4.176 14 N -0.576 5.576 15 Si 0.772 3.228 16 H -0.186 1.186 17 H -0.222 1.222 18 H -0.162 1.162 19 N -0.337 5.337 20 C 0.041 3.959 21 N -0.303 5.303 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.107 0.893 25 H 0.117 0.883 26 H 0.068 0.932 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.159 0.841 30 H 0.236 0.764 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -7.252 -6.105 -15.033 17.773 hybrid contribution 0.004 1.204 0.982 1.554 sum -7.248 -4.901 -14.051 16.553 Atomic orbital electron populations 1.21761 0.92196 1.02218 1.03115 1.20168 0.97215 0.95582 0.93311 1.21926 1.00993 0.94357 1.03215 1.21758 0.88129 0.89502 0.94412 1.22097 1.14018 1.03186 0.93994 1.18945 0.87044 0.88673 0.87158 1.44909 1.67788 1.10860 1.07879 1.18949 0.92316 0.77390 0.96550 0.93969 1.22465 0.97388 1.00554 1.01592 1.21218 1.25760 0.95788 1.15312 0.93964 1.25733 0.97218 0.98938 0.95715 1.70010 1.43039 1.14612 1.29958 0.85897 0.78857 0.77131 0.80947 1.18629 1.22163 1.16237 1.67992 1.26784 1.09093 1.29854 1.25216 0.88038 1.00908 0.81719 1.68287 1.19660 1.09892 1.32430 0.92808 0.93089 0.89305 0.88251 0.93177 0.89250 0.92868 0.84092 0.76404 0.93197 0.92291 0.92630 0.91968 0.76094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.18 71.98 0.66 -1.91 16 2 C -0.04 -0.97 3.27 -11.54 -0.04 -1.01 16 3 C -0.15 -3.06 8.64 71.98 0.62 -2.43 16 4 C 0.20 6.10 5.82 42.42 0.25 6.35 16 5 C -0.30 -10.40 8.00 22.58 0.18 -10.21 16 6 C 0.43 16.18 7.69 133.16 1.02 17.21 16 7 N -0.69 -28.21 5.22 -327.63 -1.71 -29.92 16 8 C 0.25 11.11 1.85 44.25 0.08 11.19 16 9 H 0.04 1.87 5.58 -2.39 -0.01 1.86 16 10 C -0.16 -6.35 8.93 71.98 0.64 -5.71 16 11 C -0.54 -29.27 9.31 25.60 0.24 -29.03 16 12 H 0.04 2.54 7.98 -2.91 -0.02 2.52 16 13 C 0.02 1.29 5.45 84.66 0.46 1.75 16 14 N -0.94 -55.81 13.96 21.45 0.30 -55.51 16 15 Si 0.95 41.04 24.37 68.60 1.67 42.72 16 16 H -0.26 -10.68 6.87 99.48 0.68 -10.00 16 17 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.24 -9.28 6.53 99.48 0.65 -8.63 16 19 N -0.61 -21.81 10.47 -197.62 -2.07 -23.87 16 20 C 0.33 9.89 12.28 180.90 2.22 12.12 16 21 N -0.58 -17.72 10.37 -188.34 -1.95 -19.67 16 22 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.05 1.21 6.57 -2.39 -0.02 1.20 16 29 H 0.14 4.75 4.67 -2.91 -0.01 4.73 16 30 H 0.40 16.63 8.66 -92.71 -0.80 15.82 16 31 H 0.05 1.96 3.27 -2.39 -0.01 1.95 16 32 H 0.06 2.02 7.73 -2.39 -0.02 2.00 16 33 H 0.05 2.19 8.14 -2.39 -0.02 2.18 16 34 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 35 H 0.22 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -62.52 283.12 2.79 -59.73 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 0.21 Total: 28.23 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 6.34 Total: -1.69 kcal Atomic # 7 Polarization: -123.55 SS G_CDS: -5.43 Total: -128.98 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 1.67 Total: 42.72 kcal Total: -62.52 2.79 -59.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259263734.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.905 kcal (2) G-P(sol) polarization free energy of solvation -62.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds