Wall clock time and date at job start Sun Mar 29 2020 22:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 C 1.38120 * 120.39929 * 84.99729 * 4 2 1 6 6 C 1.39627 * 118.33307 * 180.02562 * 5 4 2 7 7 N 1.38536 * 120.53097 * 179.97438 * 6 5 4 8 8 C 1.46502 * 120.00124 * 0.02562 * 7 6 5 9 9 C 1.52998 * 109.46938 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.46950 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00234 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00059 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00128 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00088 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47038 * 59.99702 * 14 12 10 16 16 H 1.48499 * 109.46870 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46808 * 299.99674 * 14 12 10 18 18 N 1.32995 * 118.93464 * 0.02562 * 6 5 4 19 19 C 1.31753 * 120.68803 * 359.97438 * 18 6 5 20 20 N 1.31788 * 121.82966 * 359.71869 * 19 18 6 21 21 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 22 22 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 24 24 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 25 25 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 26 26 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 27 27 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 28 28 H 1.08001 * 120.83349 * 0.03058 * 5 4 2 29 29 H 0.97002 * 119.99894 * 180.02562 * 7 6 5 30 30 H 1.09000 * 109.47492 * 300.00042 * 8 7 6 31 31 H 1.09001 * 109.47029 * 60.00066 * 8 7 6 32 32 H 1.09005 * 109.47288 * 299.99381 * 9 8 7 33 33 H 1.08993 * 109.47530 * 60.00342 * 9 8 7 34 34 H 0.97004 * 120.00034 * 179.97438 * 13 12 10 35 35 H 1.08001 * 119.08204 * 180.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1673 -0.0293 -2.4245 6 6 2.6360 -0.7299 -3.5377 7 7 2.7883 -0.0918 -4.7579 8 6 2.4572 1.3293 -4.8878 9 6 2.7127 1.7831 -6.3264 10 6 2.3726 3.2452 -6.4598 11 1 2.0101 3.7956 -5.6043 12 6 2.5243 3.8802 -7.6742 13 7 2.9662 3.2101 -8.7160 14 14 2.1034 5.6927 -7.8394 15 1 2.9514 6.4843 -6.9123 16 1 2.3525 6.1334 -9.2355 17 1 0.6725 5.9014 -7.5018 18 7 2.9330 -2.0198 -3.4080 19 6 2.7888 -2.6297 -2.2491 20 7 2.3545 -1.9950 -1.1789 21 1 -0.3633 0.5140 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 0.8900 25 1 3.1301 1.4425 0.0005 26 1 1.6768 1.9563 -0.8899 27 1 1.6768 1.9562 0.8901 28 1 1.9167 1.0188 -2.4954 29 1 3.1142 -0.5861 -5.5263 30 1 1.4067 1.4818 -4.6402 31 1 3.0789 1.9109 -4.2071 32 1 3.7631 1.6307 -6.5744 33 1 2.0906 1.2015 -7.0067 34 1 3.0725 3.6568 -9.5705 35 1 3.0381 -3.6778 -2.1729 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259544449.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:11 Heat of formation + Delta-G solvation = 23.162558 kcal Electronic energy + Delta-G solvation = -15985.087440 eV Core-core repulsion = 13403.212205 eV Total energy + Delta-G solvation = -2581.875235 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.72877 -36.68536 -35.77903 -33.37287 -31.99765 -30.56132 -28.89863 -27.24168 -25.12797 -24.46608 -22.80149 -21.02575 -20.49393 -17.57192 -17.14433 -16.21224 -15.10561 -15.01319 -14.83535 -14.49288 -14.27985 -14.05821 -13.77676 -13.60704 -13.04155 -12.33599 -12.23421 -11.58858 -11.46380 -11.37806 -11.24190 -11.06271 -10.87670 -10.73302 -10.29945 -10.15853 -9.74069 -9.45285 -9.41994 -8.91941 -8.51664 -7.72711 -6.16573 -4.21148 1.32243 1.68329 3.24973 3.29757 3.30878 3.47872 4.15083 4.19538 4.34516 4.57164 4.91401 5.06234 5.09365 5.20359 5.22845 5.49206 5.55773 5.69073 5.71461 5.78457 5.91115 5.94727 6.08060 6.08458 6.14999 6.23779 6.51769 6.57592 7.04235 7.38300 7.50083 7.66138 7.80881 7.94701 8.18755 8.57999 8.84044 9.44196 10.94869 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.029624 B = 0.005187 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.938441 B = 5397.098244 C = 6170.143039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.045 4.045 3 C -0.148 4.148 4 C 0.203 3.797 5 C -0.290 4.290 6 C 0.439 3.561 7 N -0.699 5.699 8 C 0.124 3.876 9 C 0.013 3.987 10 C -0.526 4.526 11 H 0.059 0.941 12 C 0.061 3.939 13 N -0.891 5.891 14 Si 0.898 3.102 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.275 1.275 18 N -0.592 5.592 19 C 0.334 3.666 20 N -0.576 5.576 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.089 0.911 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.142 0.858 29 H 0.406 0.594 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.264 0.736 35 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.572 -5.934 14.669 16.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.064 4.064 3 C -0.206 4.206 4 C 0.062 3.938 5 C -0.319 4.319 6 C 0.194 3.806 7 N -0.328 5.328 8 C 0.002 3.998 9 C -0.024 4.024 10 C -0.565 4.565 11 H 0.077 0.923 12 C -0.142 4.142 13 N -0.530 5.530 14 Si 0.725 3.275 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.201 1.201 18 N -0.317 5.317 19 C 0.044 3.956 20 N -0.296 5.296 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.108 0.892 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.160 0.840 29 H 0.242 0.758 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -2.349 -6.580 14.489 16.085 hybrid contribution -0.205 1.574 -0.734 1.749 sum -2.554 -5.006 13.754 14.858 Atomic orbital electron populations 1.21782 0.93463 1.02257 1.02282 1.20045 0.96275 0.95491 0.94632 1.21917 1.01427 0.94717 1.02512 1.21211 0.89258 0.89520 0.93822 1.21988 1.13014 1.03137 0.93714 1.18732 0.86662 0.88102 0.87130 1.45154 1.67932 1.11762 1.07949 1.21898 0.99122 0.76733 1.02084 1.19299 0.98001 0.96838 0.88267 1.20943 1.45253 0.94253 0.96033 0.92294 1.24997 0.94878 0.98538 0.95749 1.69947 1.45418 1.36595 1.00996 0.86562 0.79017 0.84687 0.77206 1.20079 1.21156 1.20076 1.67969 1.25812 1.09229 1.28709 1.24492 0.89123 0.99620 0.82388 1.68170 1.19314 1.09717 1.32431 0.92258 0.92363 0.91851 0.89227 0.92360 0.91754 0.91871 0.84022 0.75798 0.92589 0.92570 0.95717 0.95717 0.92643 0.79473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.18 37.16 0.34 -1.06 16 2 C -0.05 -0.51 3.27 -91.77 -0.30 -0.81 16 3 C -0.15 -1.50 8.64 37.16 0.32 -1.18 16 4 C 0.20 2.94 5.82 -82.33 -0.48 2.46 16 5 C -0.29 -4.55 8.48 -39.11 -0.33 -4.88 16 6 C 0.44 7.62 7.71 -154.78 -1.19 6.42 16 7 N -0.70 -12.55 5.71 -60.27 -0.34 -12.89 16 8 C 0.12 2.41 4.86 -4.04 -0.02 2.39 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C -0.53 -13.99 9.11 -34.44 -0.31 -14.30 16 11 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 14 Si 0.90 20.73 29.54 -169.99 -5.02 15.70 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 18 N -0.59 -9.95 10.47 -13.81 -0.14 -10.10 16 19 C 0.33 4.90 12.28 -92.19 -1.13 3.76 16 20 N -0.58 -8.66 10.37 -10.88 -0.11 -8.77 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.68 6.57 -51.93 -0.34 0.34 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.14 2.11 5.24 -52.49 -0.27 1.83 16 29 H 0.41 7.19 8.60 -40.82 -0.35 6.84 16 30 H 0.06 1.06 7.97 -51.93 -0.41 0.65 16 31 H 0.06 1.07 7.97 -51.93 -0.41 0.65 16 32 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.19 2.04 8.06 -52.49 -0.42 1.61 16 LS Contribution 296.19 15.07 4.46 4.46 Total: -1.00 -29.32 296.19 -8.91 -38.23 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.14 Total: 3.77 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -3.35 Total: -5.45 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.13 Total: -56.72 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.32 -8.91 -38.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259544449.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.390 kcal (2) G-P(sol) polarization free energy of solvation -29.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds