Wall clock time and date at job start Sun Mar 29 2020 22:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 C 1.38120 * 120.39929 * 84.99729 * 4 2 1 6 6 C 1.39627 * 118.33307 * 180.02562 * 5 4 2 7 7 N 1.38536 * 120.53097 * 179.97438 * 6 5 4 8 8 C 1.46502 * 120.00124 * 0.02562 * 7 6 5 9 9 C 1.52998 * 109.46938 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.46950 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00234 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00059 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00128 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00088 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47038 * 59.99702 * 14 12 10 16 16 H 1.48499 * 109.46870 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46808 * 299.99674 * 14 12 10 18 18 N 1.32995 * 118.93464 * 0.02562 * 6 5 4 19 19 C 1.31753 * 120.68803 * 359.97438 * 18 6 5 20 20 N 1.31788 * 121.82966 * 359.71869 * 19 18 6 21 21 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 22 22 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 24 24 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 25 25 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 26 26 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 27 27 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 28 28 H 1.08001 * 120.83349 * 0.03058 * 5 4 2 29 29 H 0.97002 * 119.99894 * 180.02562 * 7 6 5 30 30 H 1.09000 * 109.47492 * 300.00042 * 8 7 6 31 31 H 1.09001 * 109.47029 * 60.00066 * 8 7 6 32 32 H 1.09005 * 109.47288 * 299.99381 * 9 8 7 33 33 H 1.08993 * 109.47530 * 60.00342 * 9 8 7 34 34 H 0.97004 * 120.00034 * 179.97438 * 13 12 10 35 35 H 1.08001 * 119.08204 * 180.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1673 -0.0293 -2.4245 6 6 2.6360 -0.7299 -3.5377 7 7 2.7883 -0.0918 -4.7579 8 6 2.4572 1.3293 -4.8878 9 6 2.7127 1.7831 -6.3264 10 6 2.3726 3.2452 -6.4598 11 1 2.0101 3.7956 -5.6043 12 6 2.5243 3.8802 -7.6742 13 7 2.9662 3.2101 -8.7160 14 14 2.1034 5.6927 -7.8394 15 1 2.9514 6.4843 -6.9123 16 1 2.3525 6.1334 -9.2355 17 1 0.6725 5.9014 -7.5018 18 7 2.9330 -2.0198 -3.4080 19 6 2.7888 -2.6297 -2.2491 20 7 2.3545 -1.9950 -1.1789 21 1 -0.3633 0.5140 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 0.8900 25 1 3.1301 1.4425 0.0005 26 1 1.6768 1.9563 -0.8899 27 1 1.6768 1.9562 0.8901 28 1 1.9167 1.0188 -2.4954 29 1 3.1142 -0.5861 -5.5263 30 1 1.4067 1.4818 -4.6402 31 1 3.0789 1.9109 -4.2071 32 1 3.7631 1.6307 -6.5744 33 1 2.0906 1.2015 -7.0067 34 1 3.0725 3.6568 -9.5705 35 1 3.0381 -3.6778 -2.1729 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259544449.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:10 Heat of formation + Delta-G solvation = 6.633052 kcal Electronic energy + Delta-G solvation = -15985.804213 eV Core-core repulsion = 13403.212205 eV Total energy + Delta-G solvation = -2582.592008 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.93106 -38.03180 -36.88607 -35.23671 -33.40025 -31.94573 -30.45130 -28.05430 -26.83130 -25.68952 -24.17778 -22.70166 -21.54535 -18.92492 -18.65308 -17.85879 -16.55712 -16.32807 -16.27562 -15.88097 -15.54680 -15.41789 -14.88485 -14.79340 -14.24300 -13.97010 -13.27751 -13.14836 -12.99446 -12.60528 -12.53550 -12.40183 -12.15240 -11.99719 -11.68452 -11.63699 -11.48122 -11.36319 -10.68913 -10.56907 -10.14340 -9.08691 -8.24475 -6.36211 0.15239 0.42670 1.42945 1.45275 1.53088 2.07622 2.43007 2.95741 3.11061 3.17723 3.47133 3.80333 4.08684 4.15536 4.25509 4.33425 4.44342 4.45672 4.66352 4.74510 4.79430 4.83263 4.96477 5.00328 5.15365 5.27736 5.36120 5.39467 5.47083 5.52952 5.69608 5.81429 6.11134 6.34933 6.60092 6.79256 7.33955 7.35995 8.87657 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.029624 B = 0.005187 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.938441 B = 5397.098244 C = 6170.143039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.044 4.044 3 C -0.146 4.146 4 C 0.204 3.796 5 C -0.299 4.299 6 C 0.422 3.578 7 N -0.707 5.707 8 C 0.147 3.853 9 C 0.020 3.980 10 C -0.543 4.543 11 H 0.070 0.930 12 C 0.004 3.996 13 N -0.931 5.931 14 Si 0.968 3.032 15 H -0.265 1.265 16 H -0.286 1.286 17 H -0.265 1.265 18 N -0.609 5.609 19 C 0.330 3.670 20 N -0.580 5.580 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.087 0.913 24 H 0.098 0.902 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.148 0.852 29 H 0.404 0.596 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.001 0.999 33 H 0.001 0.999 34 H 0.265 0.735 35 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.293 -5.225 16.672 17.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.063 4.063 3 C -0.203 4.203 4 C 0.062 3.938 5 C -0.327 4.327 6 C 0.178 3.822 7 N -0.336 5.336 8 C 0.024 3.976 9 C -0.018 4.018 10 C -0.581 4.581 11 H 0.088 0.912 12 C -0.195 4.195 13 N -0.571 5.571 14 Si 0.792 3.208 15 H -0.190 1.190 16 H -0.212 1.212 17 H -0.190 1.190 18 N -0.335 5.335 19 C 0.041 3.959 20 N -0.300 5.300 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.106 0.894 24 H 0.116 0.884 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.166 0.834 29 H 0.239 0.761 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.073 0.927 35 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -3.074 -5.891 16.528 17.814 hybrid contribution 0.027 1.248 -1.284 1.791 sum -3.047 -4.643 15.244 16.224 Atomic orbital electron populations 1.21768 0.92357 1.02115 1.03153 1.20173 0.97050 0.95837 0.93236 1.21911 1.01009 0.94035 1.03367 1.21791 0.88000 0.89438 0.94597 1.22118 1.13317 1.03528 0.93723 1.18914 0.87450 0.88716 0.87078 1.44937 1.69016 1.11136 1.08513 1.21459 0.99526 0.77744 0.98869 1.19125 0.95888 0.95969 0.90804 1.21430 1.44732 0.95485 0.96479 0.91164 1.25944 0.94724 1.03353 0.95451 1.70085 1.46825 1.38604 1.01569 0.85458 0.79251 0.78940 0.77170 1.18996 1.21177 1.18984 1.67987 1.26447 1.09175 1.29886 1.25225 0.88097 1.00939 0.81625 1.68291 1.19266 1.10019 1.32463 0.92996 0.93012 0.89389 0.88416 0.93024 0.92396 0.89524 0.83432 0.76077 0.91989 0.91961 0.98064 0.98057 0.92654 0.76104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.18 71.98 0.66 -1.74 16 2 C -0.04 -0.88 3.27 -11.54 -0.04 -0.92 16 3 C -0.15 -2.60 8.64 71.98 0.62 -1.98 16 4 C 0.20 5.58 5.82 42.42 0.25 5.82 16 5 C -0.30 -9.10 8.48 22.58 0.19 -8.91 16 6 C 0.42 14.51 7.71 133.16 1.03 15.54 16 7 N -0.71 -25.65 5.71 -344.59 -1.97 -27.62 16 8 C 0.15 5.73 4.86 86.38 0.42 6.15 16 9 C 0.02 0.97 5.09 29.85 0.15 1.12 16 10 C -0.54 -28.93 9.11 25.60 0.23 -28.70 16 11 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 12 C 0.00 0.21 5.46 84.65 0.46 0.67 16 13 N -0.93 -54.67 13.29 21.45 0.28 -54.38 16 14 Si 0.97 42.19 29.54 68.60 2.03 44.22 16 15 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 16 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 17 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 18 N -0.61 -20.11 10.47 -197.61 -2.07 -22.18 16 19 C 0.33 9.18 12.28 180.90 2.22 11.40 16 20 N -0.58 -16.45 10.37 -188.33 -1.95 -18.41 16 21 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 1.11 6.57 -2.39 -0.02 1.10 16 27 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.15 4.23 5.24 -2.91 -0.02 4.22 16 29 H 0.40 14.77 8.60 -92.71 -0.80 13.97 16 30 H 0.06 2.33 7.97 -2.39 -0.02 2.31 16 31 H 0.06 2.34 7.97 -2.39 -0.02 2.32 16 32 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 33 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 35 H 0.22 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -62.45 296.19 2.80 -59.64 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.28 Total: 20.25 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 6.20 Total: -1.54 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -5.71 Total: -122.58 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -62.45 2.80 -59.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259544449.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.277 kcal (2) G-P(sol) polarization free energy of solvation -62.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds