Wall clock time and date at job start Sun Mar 29 2020 21:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38175 * 120.39968 * 2 1 4 4 C 1.39671 * 118.32036 * 179.97438 * 3 2 1 5 5 N 1.38524 * 120.53593 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99819 * 184.99768 * 5 4 3 7 7 C 1.36925 * 120.00330 * 5.00051 * 5 4 3 8 8 H 1.08001 * 119.99842 * 23.96027 * 7 5 4 9 9 C 1.38855 * 120.00261 * 203.96158 * 7 5 4 10 10 N 1.31538 * 119.99843 * 10.49028 * 9 7 5 11 11 Si 1.86796 * 119.99990 * 190.48555 * 9 7 5 12 12 H 1.48493 * 109.47621 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47006 * 120.00534 * 11 9 7 14 14 H 1.48505 * 109.46933 * 239.99682 * 11 9 7 15 15 N 1.33055 * 118.92389 * 0.02562 * 4 3 2 16 16 C 1.31707 * 120.68858 * 359.97438 * 15 4 3 17 17 C 1.50702 * 119.07583 * 179.97438 * 16 15 4 18 18 C 1.53002 * 109.47112 * 120.00391 * 17 16 15 19 19 C 1.52998 * 109.47462 * 240.00062 * 17 16 15 20 20 N 1.31820 * 121.84838 * 0.02562 * 16 15 4 21 21 H 1.09000 * 109.46660 * 90.00153 * 1 2 3 22 22 H 1.08997 * 109.47530 * 209.99761 * 1 2 3 23 23 H 1.09001 * 109.47360 * 330.00591 * 1 2 3 24 24 H 1.08001 * 120.84343 * 0.25386 * 3 2 1 25 25 H 1.09006 * 109.47150 * 93.78293 * 6 5 4 26 26 H 1.08995 * 109.47226 * 213.77998 * 6 5 4 27 27 H 1.09005 * 109.47509 * 333.79014 * 6 5 4 28 28 H 0.96994 * 119.99995 * 180.02562 * 10 9 7 29 29 H 1.08996 * 109.47392 * 0.02562 * 17 16 15 30 30 H 1.09005 * 109.47160 * 59.99583 * 18 17 16 31 31 H 1.08994 * 109.47707 * 180.02562 * 18 17 16 32 32 H 1.08999 * 109.47160 * 300.00122 * 18 17 16 33 33 H 1.08996 * 109.47377 * 300.00695 * 19 17 16 34 34 H 1.09005 * 109.46577 * 60.00360 * 19 17 16 35 35 H 1.08998 * 109.47431 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.1918 0.0000 4 6 3.6020 1.1411 0.0005 5 7 4.3486 2.3079 0.0000 6 6 5.8081 2.2435 -0.1099 7 6 3.7227 3.5214 0.1023 8 1 2.7459 3.5884 0.5584 9 6 4.3436 4.6658 -0.3802 10 7 5.4297 4.5646 -1.1153 11 14 3.6364 6.3491 0.0145 12 1 2.4205 6.1913 0.8521 13 1 4.6458 7.1491 0.7537 14 1 3.2813 7.0453 -1.2483 15 7 4.2028 -0.0461 0.0005 16 6 3.4958 -1.1573 0.0005 17 6 4.2139 -2.4822 -0.0001 18 6 3.8232 -3.2746 1.2490 19 6 3.8224 -3.2740 -1.2494 20 7 2.1777 -1.1431 0.0000 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5137 24 1 1.6866 2.1386 0.0041 25 1 6.0984 2.3427 -1.1559 26 1 6.2521 3.0535 0.4687 27 1 6.1597 1.2864 0.2755 28 1 5.8636 5.3640 -1.4520 29 1 5.2905 -2.3120 0.0000 30 1 2.7465 -3.4448 1.2494 31 1 4.3429 -4.2327 1.2489 32 1 4.1021 -2.7106 2.1391 33 1 2.7459 -3.4442 -1.2491 34 1 4.1008 -2.7094 -2.1393 35 1 4.3422 -4.2321 -1.2500 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259589063.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:39 Heat of formation + Delta-G solvation = 41.346666 kcal Electronic energy + Delta-G solvation = -16676.860517 eV Core-core repulsion = 14095.773804 eV Total energy + Delta-G solvation = -2581.086713 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.84992 -36.61763 -34.89174 -33.03825 -31.62747 -29.72934 -27.87121 -26.78353 -26.27620 -24.21691 -23.25078 -20.54554 -19.83438 -17.44017 -16.33434 -15.94242 -14.85031 -14.35698 -14.25797 -13.87120 -13.59112 -13.35048 -13.10288 -12.85818 -12.39317 -11.96301 -11.79092 -11.72662 -11.53239 -11.26619 -11.19654 -10.86106 -10.77708 -10.59551 -10.46960 -10.45830 -9.81463 -9.35842 -9.10716 -8.51099 -7.96749 -7.14923 -6.52149 -4.00908 2.21675 2.53368 3.08025 3.09986 3.14516 3.88757 4.57849 4.67037 4.88041 5.07537 5.17870 5.45860 5.63043 5.72427 5.87405 5.95368 6.04601 6.07795 6.18974 6.22991 6.25219 6.32242 6.50754 6.60649 6.62474 6.71294 6.72627 6.91212 6.94062 7.23134 7.27446 7.55052 7.87883 8.18522 8.56812 9.10200 9.26251 9.68418 10.45907 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.032596 B = 0.007118 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.784420 B = 3932.969769 C = 4545.352144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.179 3.821 3 C -0.303 4.303 4 C 0.385 3.615 5 N -0.406 5.406 6 C 0.124 3.876 7 C -0.313 4.313 8 H 0.100 0.900 9 C 0.034 3.966 10 N -0.864 5.864 11 Si 0.933 3.067 12 H -0.266 1.266 13 H -0.277 1.277 14 H -0.278 1.278 15 N -0.602 5.602 16 C 0.357 3.643 17 C -0.020 4.020 18 C -0.134 4.134 19 C -0.134 4.134 20 N -0.602 5.602 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.127 0.873 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.272 0.728 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.444 -7.238 1.795 8.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.040 3.960 3 C -0.334 4.334 4 C 0.138 3.862 5 N -0.095 5.095 6 C -0.019 4.019 7 C -0.442 4.442 8 H 0.117 0.883 9 C -0.173 4.173 10 N -0.500 5.500 11 Si 0.759 3.241 12 H -0.190 1.190 13 H -0.203 1.203 14 H -0.204 1.204 15 N -0.331 5.331 16 C 0.085 3.915 17 C -0.041 4.041 18 C -0.192 4.192 19 C -0.192 4.192 20 N -0.329 5.329 21 H 0.088 0.912 22 H 0.087 0.913 23 H 0.086 0.914 24 H 0.145 0.855 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.656 -7.556 1.688 8.185 hybrid contribution -0.563 1.963 0.037 2.042 sum -3.219 -5.593 1.724 6.679 Atomic orbital electron populations 1.20556 0.90025 1.02305 1.02151 1.20952 0.95788 0.88357 0.90887 1.21607 0.94030 0.99332 1.18441 1.18527 0.88357 0.86257 0.93049 1.42480 1.05153 1.01604 1.60286 1.21422 0.79694 0.98884 1.01898 1.19716 1.04717 0.82277 1.37515 0.88274 1.25474 0.96478 1.00491 0.94818 1.70094 1.18898 1.30303 1.30666 0.85758 0.79109 0.80780 0.78494 1.19006 1.20300 1.20364 1.67593 1.41138 0.97418 1.26990 1.22223 0.86760 0.92559 0.89944 1.19741 0.98974 0.89199 0.96173 1.21712 1.02249 0.98691 0.96545 1.21713 1.02241 0.98691 0.96588 1.67770 1.08967 1.29430 1.26720 0.91193 0.91274 0.91415 0.85478 0.92393 0.92215 0.93653 0.91765 0.89776 0.91687 0.92744 0.93220 0.91684 0.93154 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.45 10.21 36.01 0.37 -1.08 16 2 C 0.18 3.69 6.82 -82.31 -0.56 3.13 16 3 C -0.30 -6.98 9.01 -39.07 -0.35 -7.34 16 4 C 0.38 9.67 7.36 -154.72 -1.14 8.54 16 5 N -0.41 -10.60 3.11 -122.22 -0.38 -10.98 16 6 C 0.12 3.06 8.79 59.85 0.53 3.59 16 7 C -0.31 -8.14 8.95 -15.05 -0.13 -8.27 16 8 H 0.10 2.49 6.40 -52.49 -0.34 2.15 16 9 C 0.03 0.85 5.14 -17.45 -0.09 0.76 16 10 N -0.86 -22.57 10.64 55.49 0.59 -21.98 16 11 Si 0.93 19.36 29.57 -169.99 -5.03 14.34 16 12 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 13 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 14 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 15 N -0.60 -14.41 9.04 -9.95 -0.09 -14.50 16 16 C 0.36 7.58 6.34 -157.25 -1.00 6.59 16 17 C -0.02 -0.34 3.25 -91.77 -0.30 -0.64 16 18 C -0.13 -1.93 9.09 37.16 0.34 -1.59 16 19 C -0.13 -1.96 9.09 37.16 0.34 -1.62 16 20 N -0.60 -12.62 9.74 -7.06 -0.07 -12.69 16 21 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 24 H 0.13 2.85 6.42 -52.49 -0.34 2.51 16 25 H 0.06 1.49 7.41 -51.93 -0.38 1.11 16 26 H 0.06 1.48 7.25 -51.93 -0.38 1.10 16 27 H 0.04 1.05 7.22 -51.93 -0.37 0.68 16 28 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 29 H 0.08 1.40 8.09 -51.93 -0.42 0.98 16 30 H 0.06 0.96 8.01 -51.93 -0.42 0.55 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.98 8.01 -51.93 -0.42 0.56 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 291.51 15.07 4.39 4.39 Total: -1.00 -28.54 291.51 -7.74 -36.27 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.15 Total: 3.08 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -2.00 Total: 2.06 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.05 Total: -60.14 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.54 -7.74 -36.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259589063.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.619 kcal (2) G-P(sol) polarization free energy of solvation -28.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds