Wall clock time and date at job start Sun Mar 29 2020 21:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38175 * 120.39968 * 2 1 4 4 C 1.39671 * 118.32036 * 179.97438 * 3 2 1 5 5 N 1.38524 * 120.53593 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99819 * 184.99768 * 5 4 3 7 7 C 1.36925 * 120.00330 * 5.00051 * 5 4 3 8 8 H 1.08001 * 119.99842 * 23.96027 * 7 5 4 9 9 C 1.38855 * 120.00261 * 203.96158 * 7 5 4 10 10 N 1.31538 * 119.99843 * 10.49028 * 9 7 5 11 11 Si 1.86796 * 119.99990 * 190.48555 * 9 7 5 12 12 H 1.48493 * 109.47621 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47006 * 120.00534 * 11 9 7 14 14 H 1.48505 * 109.46933 * 239.99682 * 11 9 7 15 15 N 1.33055 * 118.92389 * 0.02562 * 4 3 2 16 16 C 1.31707 * 120.68858 * 359.97438 * 15 4 3 17 17 C 1.50702 * 119.07583 * 179.97438 * 16 15 4 18 18 C 1.53002 * 109.47112 * 120.00391 * 17 16 15 19 19 C 1.52998 * 109.47462 * 240.00062 * 17 16 15 20 20 N 1.31820 * 121.84838 * 0.02562 * 16 15 4 21 21 H 1.09000 * 109.46660 * 90.00153 * 1 2 3 22 22 H 1.08997 * 109.47530 * 209.99761 * 1 2 3 23 23 H 1.09001 * 109.47360 * 330.00591 * 1 2 3 24 24 H 1.08001 * 120.84343 * 0.25386 * 3 2 1 25 25 H 1.09006 * 109.47150 * 93.78293 * 6 5 4 26 26 H 1.08995 * 109.47226 * 213.77998 * 6 5 4 27 27 H 1.09005 * 109.47509 * 333.79014 * 6 5 4 28 28 H 0.96994 * 119.99995 * 180.02562 * 10 9 7 29 29 H 1.08996 * 109.47392 * 0.02562 * 17 16 15 30 30 H 1.09005 * 109.47160 * 59.99583 * 18 17 16 31 31 H 1.08994 * 109.47707 * 180.02562 * 18 17 16 32 32 H 1.08999 * 109.47160 * 300.00122 * 18 17 16 33 33 H 1.08996 * 109.47377 * 300.00695 * 19 17 16 34 34 H 1.09005 * 109.46577 * 60.00360 * 19 17 16 35 35 H 1.08998 * 109.47431 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.1918 0.0000 4 6 3.6020 1.1411 0.0005 5 7 4.3486 2.3079 0.0000 6 6 5.8081 2.2435 -0.1099 7 6 3.7227 3.5214 0.1023 8 1 2.7459 3.5884 0.5584 9 6 4.3436 4.6658 -0.3802 10 7 5.4297 4.5646 -1.1153 11 14 3.6364 6.3491 0.0145 12 1 2.4205 6.1913 0.8521 13 1 4.6458 7.1491 0.7537 14 1 3.2813 7.0453 -1.2483 15 7 4.2028 -0.0461 0.0005 16 6 3.4958 -1.1573 0.0005 17 6 4.2139 -2.4822 -0.0001 18 6 3.8232 -3.2746 1.2490 19 6 3.8224 -3.2740 -1.2494 20 7 2.1777 -1.1431 0.0000 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5137 24 1 1.6866 2.1386 0.0041 25 1 6.0984 2.3427 -1.1559 26 1 6.2521 3.0535 0.4687 27 1 6.1597 1.2864 0.2755 28 1 5.8636 5.3640 -1.4520 29 1 5.2905 -2.3120 0.0000 30 1 2.7465 -3.4448 1.2494 31 1 4.3429 -4.2327 1.2489 32 1 4.1021 -2.7106 2.1391 33 1 2.7459 -3.4442 -1.2491 34 1 4.1008 -2.7094 -2.1393 35 1 4.3422 -4.2321 -1.2500 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259589063.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:39 Heat of formation + Delta-G solvation = 26.138273 kcal Electronic energy + Delta-G solvation = -16677.520003 eV Core-core repulsion = 14095.773804 eV Total energy + Delta-G solvation = -2581.746198 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.58763 -38.42905 -36.32118 -34.80285 -33.37679 -31.44575 -29.51614 -28.09374 -27.94437 -26.05666 -24.85526 -22.26968 -21.34901 -19.28758 -18.11228 -17.73795 -16.46856 -16.03525 -15.92949 -15.52708 -15.17069 -14.91727 -14.85832 -14.08353 -13.88976 -13.46087 -13.25894 -13.17797 -12.93089 -12.87454 -12.73536 -12.67409 -12.32369 -12.10251 -12.06115 -11.73033 -11.58302 -11.10062 -10.93950 -10.26187 -9.74551 -9.03023 -8.40754 -5.97890 0.49976 0.75084 1.40141 1.44634 1.54774 2.15970 2.80556 2.84275 3.30764 3.33986 3.63753 4.17494 4.29308 4.34974 4.40614 4.61875 4.68743 4.75988 4.84743 4.88822 4.90613 4.92467 4.97913 5.04519 5.10232 5.17559 5.22394 5.29238 5.30381 5.42747 5.48327 5.80350 6.07744 6.35941 6.70769 7.20077 7.43045 7.86396 8.59118 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.032596 B = 0.007118 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.784420 B = 3932.969769 C = 4545.352144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.183 3.817 3 C -0.328 4.328 4 C 0.368 3.632 5 N -0.432 5.432 6 C 0.145 3.855 7 C -0.337 4.337 8 H 0.100 0.900 9 C -0.009 4.009 10 N -0.898 5.898 11 Si 1.003 2.997 12 H -0.257 1.257 13 H -0.273 1.273 14 H -0.275 1.275 15 N -0.625 5.625 16 C 0.347 3.653 17 C -0.025 4.025 18 C -0.125 4.125 19 C -0.126 4.126 20 N -0.596 5.596 21 H 0.088 0.912 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.127 0.873 25 H 0.037 0.963 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.275 0.725 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.036 0.964 33 H 0.061 0.939 34 H 0.034 0.966 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.920 -8.431 2.178 10.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.043 3.957 3 C -0.359 4.359 4 C 0.123 3.877 5 N -0.124 5.124 6 C 0.001 3.999 7 C -0.465 4.465 8 H 0.118 0.882 9 C -0.212 4.212 10 N -0.534 5.534 11 Si 0.826 3.174 12 H -0.181 1.181 13 H -0.198 1.198 14 H -0.201 1.201 15 N -0.354 5.354 16 C 0.076 3.924 17 C -0.045 4.045 18 C -0.183 4.183 19 C -0.184 4.184 20 N -0.322 5.322 21 H 0.106 0.894 22 H 0.105 0.895 23 H 0.102 0.898 24 H 0.145 0.855 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.147 -8.794 2.075 9.942 hybrid contribution -0.159 2.124 -0.092 2.132 sum -4.306 -6.670 1.983 8.183 Atomic orbital electron populations 1.20671 0.86066 1.04009 1.03777 1.21777 0.98325 0.87334 0.88259 1.21774 0.93444 1.00474 1.20191 1.18998 0.89461 0.86577 0.92712 1.42631 1.05332 1.02096 1.62345 1.21129 0.79832 0.98623 1.00294 1.19970 1.05211 0.82883 1.38480 0.88227 1.26390 0.96698 1.03858 0.94243 1.70198 1.20167 1.31343 1.31726 0.84714 0.78602 0.75841 0.78283 1.18098 1.19829 1.20085 1.67681 1.41998 0.97803 1.27939 1.23239 0.87353 0.93546 0.88233 1.19984 0.98463 0.87561 0.98522 1.21662 1.02399 0.99690 0.94536 1.21666 1.02404 0.99715 0.94594 1.67966 1.08830 1.29356 1.26032 0.89373 0.89543 0.89764 0.85483 0.94451 0.93179 0.93067 0.91542 0.89933 0.92007 0.89232 0.94430 0.91997 0.94661 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.48 10.21 71.24 0.73 -1.75 16 2 C 0.18 7.30 6.82 42.44 0.29 7.59 16 3 C -0.33 -15.18 9.01 22.60 0.20 -14.98 16 4 C 0.37 18.88 7.36 133.16 0.98 19.86 16 5 N -0.43 -23.31 3.11 -540.59 -1.68 -24.99 16 6 C 0.14 7.44 8.79 127.77 1.12 8.56 16 7 C -0.34 -17.95 8.95 84.05 0.75 -17.20 16 8 H 0.10 5.11 6.40 -2.91 -0.02 5.09 16 9 C -0.01 -0.46 5.14 84.88 0.44 -0.03 16 10 N -0.90 -48.17 10.64 21.65 0.23 -47.94 16 11 Si 1.00 39.90 29.57 68.60 2.03 41.93 16 12 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 13 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 14 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 15 N -0.62 -30.26 9.04 -185.38 -1.68 -31.94 16 16 C 0.35 14.51 6.34 138.77 0.88 15.39 16 17 C -0.02 -0.79 3.25 -11.54 -0.04 -0.83 16 18 C -0.12 -3.27 9.09 71.98 0.65 -2.62 16 19 C -0.13 -3.37 9.09 71.98 0.65 -2.72 16 20 N -0.60 -24.11 9.74 -176.26 -1.72 -25.82 16 21 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 22 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 23 H 0.08 2.12 8.09 -2.39 -0.02 2.10 16 24 H 0.13 5.76 6.42 -2.91 -0.02 5.74 16 25 H 0.04 2.02 7.41 -2.38 -0.02 2.00 16 26 H 0.05 2.59 7.25 -2.39 -0.02 2.57 16 27 H 0.05 2.47 7.22 -2.38 -0.02 2.46 16 28 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 29 H 0.08 2.65 8.09 -2.39 -0.02 2.63 16 30 H 0.06 1.66 8.01 -2.38 -0.02 1.64 16 31 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 1.70 8.01 -2.39 -0.02 1.68 16 34 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -62.59 291.51 4.92 -57.68 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 1.07 Total: 19.82 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 6.66 Total: 11.28 kcal Atomic # 7 Polarization: -125.86 SS G_CDS: -4.84 Total: -130.70 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Total: -62.59 4.92 -57.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259589063.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.814 kcal (2) G-P(sol) polarization free energy of solvation -62.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds