Wall clock time and date at job start Sun Mar 29 2020 21:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99909 * 2 1 4 4 H 1.48503 * 109.46913 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46828 * 299.99571 * 3 2 1 6 6 H 1.48501 * 109.47203 * 60.00105 * 3 2 1 7 7 C 1.37872 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00054 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00288 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.50702 * 60.07293 * 9 7 2 11 11 C 1.53123 * 109.49940 * 299.99679 * 9 7 2 12 12 C 1.53124 * 109.15886 * 182.40347 * 11 9 7 13 13 C 1.53039 * 109.27846 * 57.65751 * 12 11 9 14 14 N 1.46846 * 109.51942 * 300.81599 * 13 12 11 15 15 C 1.46899 * 110.99939 * 185.83919 * 14 13 12 16 16 C 1.50700 * 109.47295 * 66.05134 * 15 14 13 17 17 C 1.39869 * 125.90288 * 94.99748 * 16 15 14 18 18 C 1.35312 * 107.91889 * 180.26703 * 17 16 15 19 19 N 1.34951 * 107.74772 * 359.61173 * 18 17 16 20 20 H 0.97001 * 126.03184 * 180.15526 * 19 18 17 21 21 N 1.30837 * 125.89523 * 275.02963 * 16 15 14 22 22 C 1.46848 * 111.19749 * 61.74485 * 14 13 12 23 23 H 0.97000 * 120.00070 * 359.97438 * 1 2 3 24 24 H 1.08991 * 109.52685 * 62.50193 * 11 9 7 25 25 H 1.08999 * 109.57680 * 302.33798 * 11 9 7 26 26 H 1.08996 * 109.50439 * 297.71455 * 12 11 9 27 27 H 1.09003 * 109.50364 * 177.59077 * 12 11 9 28 28 H 1.08997 * 109.46333 * 180.80309 * 13 12 11 29 29 H 1.08998 * 109.46803 * 60.83172 * 13 12 11 30 30 H 1.09001 * 109.47557 * 306.04920 * 15 14 13 31 31 H 1.09003 * 109.47366 * 186.04647 * 15 14 13 32 32 H 1.08002 * 126.03560 * 359.97438 * 17 16 15 33 33 H 1.08008 * 126.12506 * 179.75891 * 18 17 16 34 34 H 1.09005 * 109.45982 * 58.27563 * 22 14 13 35 35 H 1.09002 * 109.46541 * 178.23880 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6255 -2.5583 -0.8901 11 6 0.3700 -2.5807 1.2503 12 6 -0.3457 -3.9342 1.2731 13 6 0.6944 -5.0564 1.2418 14 7 1.5110 -4.9348 0.0274 15 6 2.4286 -6.0742 -0.1062 16 6 1.6345 -7.3347 -0.3330 17 6 1.3347 -7.9029 -1.5755 18 6 0.6027 -9.0197 -1.3568 19 7 0.4521 -9.1583 -0.0229 20 1 -0.0273 -9.8720 0.4261 21 7 1.1059 -8.0864 0.5983 22 6 2.2448 -3.6629 0.0061 23 1 -0.4850 0.8400 0.0004 24 1 -0.3679 -1.7789 1.2288 25 1 0.9900 -2.4815 2.1413 26 1 -0.9962 -4.0166 0.4025 27 1 -0.9414 -4.0156 2.1823 28 1 0.1877 -6.0214 1.2436 29 1 1.3360 -4.9816 2.1198 30 1 3.0179 -6.1750 0.8052 31 1 3.0945 -5.9071 -0.9529 32 1 1.6308 -7.5157 -2.5392 33 1 0.2112 -9.6829 -2.1141 34 1 2.8791 -3.5948 0.8900 35 1 2.8641 -3.6159 -0.8896 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259989813.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:17 Heat of formation + Delta-G solvation = 70.784021 kcal Electronic energy + Delta-G solvation = -16610.539927 eV Core-core repulsion = 14030.729713 eV Total energy + Delta-G solvation = -2579.810214 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.03410 -38.01627 -34.02936 -32.21751 -30.79745 -29.89792 -29.63347 -26.24021 -24.85387 -22.11809 -21.40541 -21.25202 -19.31334 -18.50108 -18.01026 -16.32773 -15.22104 -14.69673 -14.33494 -14.11174 -13.95038 -13.41449 -13.19522 -12.86169 -12.63049 -12.27022 -11.77749 -11.70503 -11.25680 -10.92308 -10.60864 -10.59360 -10.50274 -10.01679 -9.76549 -9.42573 -9.33562 -8.97071 -8.63307 -8.59780 -8.24667 -7.57861 -5.92001 -3.98052 1.96957 2.88474 2.96448 3.33699 3.41632 3.45409 4.46588 4.70489 4.86685 4.94257 5.34188 5.38145 5.74004 5.84663 5.89754 5.95635 6.01769 6.14711 6.23012 6.39456 6.48724 6.60894 6.73418 6.83852 6.85065 7.04209 7.30567 7.33417 7.47633 7.73626 7.81106 7.81530 7.89403 8.15471 8.24594 8.54366 9.06445 9.66044 11.14009 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.053302 B = 0.005421 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.180142 B = 5163.819698 C = 5370.549012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.055 3.945 10 H 0.035 0.965 11 C -0.110 4.110 12 C -0.116 4.116 13 C 0.062 3.938 14 N -0.532 5.532 15 C 0.130 3.870 16 C 0.097 3.903 17 C -0.253 4.253 18 C 0.048 3.952 19 N -0.484 5.484 20 H 0.435 0.565 21 N -0.294 5.294 22 C 0.069 3.931 23 H 0.258 0.742 24 H 0.090 0.910 25 H 0.029 0.971 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.022 0.978 30 H 0.042 0.958 31 H 0.090 0.910 32 H 0.147 0.853 33 H 0.173 0.827 34 H 0.020 0.980 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.937 -15.841 -1.349 15.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.036 3.964 10 H 0.053 0.947 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.066 4.066 14 N -0.257 5.257 15 C 0.000 4.000 16 C -0.070 4.070 17 C -0.283 4.283 18 C -0.099 4.099 19 N -0.192 5.192 20 H 0.278 0.722 21 N -0.118 5.118 22 C -0.058 4.058 23 H 0.068 0.932 24 H 0.108 0.892 25 H 0.048 0.952 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.109 0.891 32 H 0.165 0.835 33 H 0.190 0.810 34 H 0.038 0.962 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.327 -15.871 -0.527 15.883 hybrid contribution 0.734 0.549 -0.006 0.917 sum 1.061 -15.323 -0.532 15.369 Atomic orbital electron populations 1.69910 1.05852 1.26131 1.50877 1.24934 0.94804 0.98928 0.95206 0.86579 0.80144 0.84020 0.77484 1.19844 1.21085 1.21156 1.21195 0.92873 0.90648 1.50418 0.92743 1.18669 0.92627 0.90212 0.94903 0.94723 1.21653 1.00031 0.94717 0.98447 1.21670 0.97253 0.96523 0.99967 1.22074 0.95614 0.99142 0.89737 1.61962 1.23614 1.01531 1.38611 1.20428 0.92491 0.85843 1.01257 1.22303 0.97510 0.96028 0.91170 1.21448 1.08914 0.98775 0.99163 1.22518 1.00847 0.99908 0.86660 1.46319 1.44958 1.23005 1.04927 0.72205 1.77304 1.14684 0.98582 1.21244 1.22330 0.96472 0.88112 0.98889 0.93171 0.89181 0.95183 0.92322 0.93737 0.91682 0.96017 0.94039 0.89130 0.83505 0.81009 0.96154 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 11.35 55.43 0.63 -25.06 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.51 -14.18 8.56 -34.44 -0.29 -14.47 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.05 1.40 2.26 -91.69 -0.21 1.19 16 10 H 0.03 0.98 8.14 -51.93 -0.42 0.56 16 11 C -0.11 -2.71 5.02 -26.60 -0.13 -2.84 16 12 C -0.12 -2.45 6.09 -26.65 -0.16 -2.61 16 13 C 0.06 1.22 5.30 -3.83 -0.02 1.20 16 14 N -0.53 -10.40 4.65 -236.11 -1.10 -11.50 16 15 C 0.13 2.12 5.53 -4.98 -0.03 2.09 16 16 C 0.10 1.52 5.98 -82.41 -0.49 1.02 16 17 C -0.25 -3.34 10.74 -40.01 -0.43 -3.77 16 18 C 0.05 0.50 11.99 -17.22 -0.21 0.29 16 19 N -0.48 -5.50 7.36 30.45 0.22 -5.27 16 20 H 0.43 3.35 8.96 -182.61 -1.64 1.71 16 21 N -0.29 -4.54 11.51 33.67 0.39 -4.15 16 22 C 0.07 1.49 4.68 -3.84 -0.02 1.47 16 23 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 24 H 0.09 2.45 6.15 -51.93 -0.32 2.13 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 1.24 6.23 -51.93 -0.32 0.92 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.67 8.12 -51.93 -0.42 0.25 16 31 H 0.09 1.32 7.98 -51.93 -0.41 0.91 16 32 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.17 1.05 8.06 -52.48 -0.42 0.63 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 1.27 8.01 -51.93 -0.42 0.86 16 LS Contribution 283.68 15.07 4.27 4.27 Total: -1.00 -31.16 283.68 -9.15 -40.31 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -6.46 Total: -0.19 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -2.09 Total: -14.78 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.14 Total: -45.98 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.16 -9.15 -40.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259989813.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.089 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds