Wall clock time and date at job start Sun Mar 29 2020 21:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99909 * 2 1 4 4 H 1.48503 * 109.46913 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46828 * 299.99571 * 3 2 1 6 6 H 1.48501 * 109.47203 * 60.00105 * 3 2 1 7 7 C 1.37872 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00054 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00288 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.50702 * 60.07293 * 9 7 2 11 11 C 1.53123 * 109.49940 * 299.99679 * 9 7 2 12 12 C 1.53124 * 109.15886 * 182.40347 * 11 9 7 13 13 C 1.53039 * 109.27846 * 57.65751 * 12 11 9 14 14 N 1.46846 * 109.51942 * 300.81599 * 13 12 11 15 15 C 1.46899 * 110.99939 * 185.83919 * 14 13 12 16 16 C 1.50700 * 109.47295 * 66.05134 * 15 14 13 17 17 C 1.39869 * 125.90288 * 94.99748 * 16 15 14 18 18 C 1.35312 * 107.91889 * 180.26703 * 17 16 15 19 19 N 1.34951 * 107.74772 * 359.61173 * 18 17 16 20 20 H 0.97001 * 126.03184 * 180.15526 * 19 18 17 21 21 N 1.30837 * 125.89523 * 275.02963 * 16 15 14 22 22 C 1.46848 * 111.19749 * 61.74485 * 14 13 12 23 23 H 0.97000 * 120.00070 * 359.97438 * 1 2 3 24 24 H 1.08991 * 109.52685 * 62.50193 * 11 9 7 25 25 H 1.08999 * 109.57680 * 302.33798 * 11 9 7 26 26 H 1.08996 * 109.50439 * 297.71455 * 12 11 9 27 27 H 1.09003 * 109.50364 * 177.59077 * 12 11 9 28 28 H 1.08997 * 109.46333 * 180.80309 * 13 12 11 29 29 H 1.08998 * 109.46803 * 60.83172 * 13 12 11 30 30 H 1.09001 * 109.47557 * 306.04920 * 15 14 13 31 31 H 1.09003 * 109.47366 * 186.04647 * 15 14 13 32 32 H 1.08002 * 126.03560 * 359.97438 * 17 16 15 33 33 H 1.08008 * 126.12506 * 179.75891 * 18 17 16 34 34 H 1.09005 * 109.45982 * 58.27563 * 22 14 13 35 35 H 1.09002 * 109.46541 * 178.23880 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6255 -2.5583 -0.8901 11 6 0.3700 -2.5807 1.2503 12 6 -0.3457 -3.9342 1.2731 13 6 0.6944 -5.0564 1.2418 14 7 1.5110 -4.9348 0.0274 15 6 2.4286 -6.0742 -0.1062 16 6 1.6345 -7.3347 -0.3330 17 6 1.3347 -7.9029 -1.5755 18 6 0.6027 -9.0197 -1.3568 19 7 0.4521 -9.1583 -0.0229 20 1 -0.0273 -9.8720 0.4261 21 7 1.1059 -8.0864 0.5983 22 6 2.2448 -3.6629 0.0061 23 1 -0.4850 0.8400 0.0004 24 1 -0.3679 -1.7789 1.2288 25 1 0.9900 -2.4815 2.1413 26 1 -0.9962 -4.0166 0.4025 27 1 -0.9414 -4.0156 2.1823 28 1 0.1877 -6.0214 1.2436 29 1 1.3360 -4.9816 2.1198 30 1 3.0179 -6.1750 0.8052 31 1 3.0945 -5.9071 -0.9529 32 1 1.6308 -7.5157 -2.5392 33 1 0.2112 -9.6829 -2.1141 34 1 2.8791 -3.5948 0.8900 35 1 2.8641 -3.6159 -0.8896 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259989813.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:17 Heat of formation + Delta-G solvation = 49.637284 kcal Electronic energy + Delta-G solvation = -16611.456918 eV Core-core repulsion = 14030.729713 eV Total energy + Delta-G solvation = -2580.727205 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.01720 -39.68676 -35.79723 -33.93754 -32.18448 -31.55693 -30.77774 -27.63262 -26.88889 -23.76535 -23.18701 -22.21675 -20.47930 -20.34676 -18.91904 -18.37469 -16.85348 -16.45450 -15.75166 -15.60221 -15.17937 -14.91952 -14.41726 -14.34539 -14.30041 -14.01543 -13.41875 -13.20553 -12.85083 -12.72138 -12.51380 -12.42301 -11.83009 -11.71771 -11.57606 -11.36859 -10.90480 -10.64798 -10.38646 -10.32788 -9.55919 -9.14496 -8.05015 -6.19142 1.02481 1.43183 1.44691 1.56294 1.84735 2.12504 2.46243 3.22209 3.26249 3.81033 3.98456 4.20842 4.24975 4.37004 4.46622 4.61399 4.63693 4.74967 4.85003 4.90008 4.96284 5.00870 5.10544 5.17588 5.19585 5.37704 5.52711 5.66263 5.72323 5.97658 6.12807 6.21921 6.30076 6.47820 6.57935 6.81324 6.93702 7.48840 9.00189 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.053302 B = 0.005421 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.180142 B = 5163.819698 C = 5370.549012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.533 4.533 8 H 0.055 0.945 9 C 0.053 3.947 10 H -0.002 1.002 11 C -0.103 4.103 12 C -0.109 4.109 13 C 0.072 3.928 14 N -0.539 5.539 15 C 0.132 3.868 16 C 0.075 3.925 17 C -0.282 4.282 18 C 0.073 3.927 19 N -0.473 5.473 20 H 0.451 0.549 21 N -0.330 5.330 22 C 0.082 3.918 23 H 0.260 0.740 24 H 0.059 0.941 25 H 0.023 0.977 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.020 0.980 30 H 0.040 0.960 31 H 0.105 0.895 32 H 0.155 0.845 33 H 0.221 0.779 34 H 0.018 0.982 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.289 -17.373 -1.752 17.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.571 4.571 8 H 0.073 0.927 9 C 0.034 3.966 10 H 0.016 0.984 11 C -0.141 4.141 12 C -0.146 4.146 13 C -0.056 4.056 14 N -0.265 5.265 15 C 0.003 3.997 16 C -0.091 4.091 17 C -0.312 4.312 18 C -0.075 4.075 19 N -0.183 5.183 20 H 0.297 0.703 21 N -0.156 5.156 22 C -0.045 4.045 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.123 0.877 32 H 0.173 0.827 33 H 0.238 0.762 34 H 0.036 0.964 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.684 -17.427 -0.917 17.465 hybrid contribution 0.571 0.926 0.089 1.092 sum 1.255 -16.501 -0.828 16.570 Atomic orbital electron populations 1.70054 1.07279 1.26971 1.51440 1.25735 0.95629 1.02394 0.94797 0.85540 0.79148 0.79659 0.77495 1.18977 1.20637 1.20797 1.21552 0.93116 0.91955 1.50513 0.92696 1.18593 0.92999 0.91423 0.93616 0.98353 1.21467 0.99193 0.95801 0.97650 1.21574 0.97471 0.95136 1.00468 1.21952 0.95154 0.98679 0.89798 1.61883 1.24320 1.01705 1.38549 1.20433 0.92283 0.85216 1.01818 1.22218 0.98400 0.96012 0.92447 1.21718 1.10496 1.00159 0.98815 1.23200 0.98366 0.99055 0.86838 1.46367 1.43982 1.22383 1.05523 0.70299 1.77195 1.16028 1.00064 1.22309 1.22029 0.95373 0.88062 0.99083 0.93121 0.92250 0.95854 0.93404 0.91741 0.90642 0.96136 0.94135 0.87713 0.82680 0.76208 0.96396 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.28 11.35 21.45 0.24 -54.03 16 2 C 0.01 0.73 5.30 84.65 0.45 1.18 16 3 Si 0.96 44.18 29.54 68.60 2.03 46.21 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 7 C -0.53 -29.96 8.56 25.60 0.22 -29.74 16 8 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 9 C 0.05 2.75 2.26 -11.49 -0.03 2.73 16 10 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 11 C -0.10 -5.18 5.02 30.68 0.15 -5.02 16 12 C -0.11 -4.59 6.09 30.65 0.19 -4.41 16 13 C 0.07 2.79 5.30 86.33 0.46 3.25 16 14 N -0.54 -20.91 4.65 -900.93 -4.19 -25.09 16 15 C 0.13 4.20 5.53 85.56 0.47 4.67 16 16 C 0.08 2.24 5.98 43.10 0.26 2.50 16 17 C -0.28 -6.81 10.74 21.99 0.24 -6.58 16 18 C 0.07 1.26 11.99 83.54 1.00 2.26 16 19 N -0.47 -9.37 7.36 -57.59 -0.42 -9.79 16 20 H 0.45 5.54 8.96 -213.33 -1.91 3.63 16 21 N -0.33 -9.66 11.51 -47.38 -0.55 -10.20 16 22 C 0.08 3.56 4.68 86.32 0.40 3.97 16 23 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 24 H 0.06 3.35 6.15 -2.39 -0.01 3.33 16 25 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.06 2.43 8.14 -2.39 -0.02 2.42 16 28 H 0.08 2.80 6.23 -2.39 -0.01 2.78 16 29 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.04 1.29 8.12 -2.39 -0.02 1.27 16 31 H 0.10 2.96 7.98 -2.39 -0.02 2.94 16 32 H 0.16 3.34 8.06 -2.91 -0.02 3.31 16 33 H 0.22 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.07 2.83 8.01 -2.39 -0.02 2.81 16 Total: -1.00 -68.05 283.68 0.09 -67.96 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -0.84 Total: 10.15 kcal Atomic # 6 Polarization: -29.01 SS G_CDS: 3.81 Total: -25.20 kcal Atomic # 7 Polarization: -94.21 SS G_CDS: -4.91 Total: -99.12 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -68.05 0.09 -67.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259989813.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.595 kcal (2) G-P(sol) polarization free energy of solvation -68.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds