Wall clock time and date at job start Sun Mar 29 2020 21:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31788 * 119.07967 * 2 1 4 4 C 1.32554 * 121.00590 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.39836 * 179.97438 * 4 3 2 6 6 C 1.38113 * 119.20036 * 0.02562 * 4 3 2 7 7 C 1.50696 * 120.83343 * 179.97438 * 6 4 3 8 8 C 1.39627 * 118.33326 * 0.02562 * 6 4 3 9 9 N 1.38544 * 120.53285 * 179.97438 * 8 6 4 10 10 C 1.46501 * 120.00227 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47233 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47368 * 180.02562 * 11 10 9 13 13 H 1.08007 * 119.99393 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00157 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00046 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99787 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47516 * 59.99321 * 16 14 12 18 18 H 1.48503 * 109.47048 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47266 * 299.99420 * 16 14 12 20 20 N 1.31744 * 119.08431 * 180.02562 * 2 1 3 21 21 H 1.08999 * 109.47283 * 89.99373 * 1 2 3 22 22 H 1.09001 * 109.47499 * 209.99563 * 1 2 3 23 23 H 1.09001 * 109.47343 * 329.99839 * 1 2 3 24 24 H 1.08997 * 109.47043 * 90.00203 * 5 4 3 25 25 H 1.09002 * 109.46921 * 209.99828 * 5 4 3 26 26 H 1.09004 * 109.47441 * 329.99645 * 5 4 3 27 27 H 1.09004 * 109.47430 * 89.99917 * 7 6 4 28 28 H 1.09007 * 109.46972 * 209.99879 * 7 6 4 29 29 H 1.08996 * 109.47311 * 329.99608 * 7 6 4 30 30 H 0.97002 * 119.99975 * 359.97438 * 9 8 6 31 31 H 1.09000 * 109.47102 * 300.00298 * 10 9 8 32 32 H 1.09004 * 109.46620 * 60.00048 * 10 9 8 33 33 H 1.09000 * 109.47204 * 300.00094 * 11 10 9 34 34 H 1.08996 * 109.47089 * 59.99814 * 11 10 9 35 35 H 0.96999 * 120.00164 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1475 1.1518 0.0000 4 6 3.4723 1.1963 -0.0005 5 6 4.1908 2.5210 -0.0011 6 6 4.1863 0.0140 -0.0016 7 6 5.6932 0.0217 -0.0028 8 6 3.4768 -1.1885 -0.0026 9 7 4.1469 -2.4011 -0.0043 10 6 3.3908 -3.6560 -0.0048 11 6 4.3631 -4.8372 -0.0060 12 6 3.5854 -6.1280 -0.0072 13 1 2.5055 -6.1078 -0.0067 14 6 4.2523 -7.3348 -0.0079 15 7 5.5672 -7.3594 -0.0080 16 14 3.2882 -8.9347 -0.0086 17 1 2.4329 -8.9968 -1.2210 18 1 4.2319 -10.0813 -0.0099 19 1 2.4333 -8.9981 1.2040 20 7 2.1474 -1.1513 -0.0005 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5139 24 1 4.3644 2.8406 1.0264 25 1 5.1461 2.4160 -0.5152 26 1 3.5815 3.2647 -0.5149 27 1 6.0574 0.0232 1.0246 28 1 6.0607 -0.8662 -0.5173 29 1 6.0516 0.9137 -0.5165 30 1 5.1167 -2.4193 -0.0051 31 1 2.7639 -3.7028 0.8856 32 1 2.7625 -3.7011 -0.8944 33 1 4.9904 -4.7906 -0.8962 34 1 4.9911 -4.7918 0.8837 35 1 6.0364 -8.2083 -0.0088 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260109735.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:07 Heat of formation + Delta-G solvation = 25.493206 kcal Electronic energy + Delta-G solvation = -16021.538300 eV Core-core repulsion = 13439.764129 eV Total energy + Delta-G solvation = -2581.774171 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.80798 -36.50179 -34.78910 -33.52512 -31.92569 -30.02075 -29.33591 -28.61109 -25.53420 -24.46869 -21.81048 -21.61739 -20.69008 -17.51300 -17.03518 -16.06662 -15.40761 -14.64986 -14.38915 -14.04326 -13.96086 -13.75867 -13.53701 -12.89646 -12.88428 -12.56256 -12.22570 -12.21339 -12.14106 -11.84515 -11.21916 -11.20807 -10.80219 -10.65890 -10.37780 -10.00227 -9.62908 -9.35725 -9.14511 -8.78039 -8.45535 -7.57321 -6.10972 -4.14035 1.28298 1.71399 3.29844 3.33743 3.36141 3.55202 4.08982 4.23729 4.38751 4.51609 4.93513 5.10304 5.18844 5.26072 5.39452 5.47108 5.56448 5.64658 5.71176 5.77707 5.82839 5.90755 6.10726 6.19445 6.27401 6.34918 6.69705 6.76497 7.18497 7.38902 7.59174 7.64586 7.88114 7.98987 8.27455 8.67888 8.91505 9.50772 11.00727 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.036519 B = 0.005025 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.537058 B = 5571.279402 C = 6301.464492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.353 3.647 3 N -0.573 5.573 4 C 0.195 3.805 5 C -0.103 4.103 6 C -0.275 4.275 7 C -0.095 4.095 8 C 0.446 3.554 9 N -0.698 5.698 10 C 0.130 3.870 11 C 0.011 3.989 12 C -0.521 4.521 13 H 0.059 0.941 14 C 0.059 3.941 15 N -0.895 5.895 16 Si 0.898 3.102 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.275 1.275 20 N -0.574 5.574 21 H 0.081 0.919 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.408 0.592 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.021 0.979 34 H 0.021 0.979 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.365 16.530 0.027 16.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.084 3.916 3 N -0.294 5.294 4 C 0.053 3.947 5 C -0.160 4.160 6 C -0.285 4.285 7 C -0.153 4.153 8 C 0.200 3.800 9 N -0.329 5.329 10 C 0.008 3.992 11 C -0.026 4.026 12 C -0.560 4.560 13 H 0.077 0.923 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.725 3.275 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 N -0.301 5.301 21 H 0.100 0.900 22 H 0.101 0.899 23 H 0.099 0.901 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.245 0.755 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.039 0.961 34 H 0.040 0.960 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.265 16.175 0.028 16.501 hybrid contribution 0.880 -1.106 -0.008 1.414 sum -2.385 15.069 0.020 15.256 Atomic orbital electron populations 1.20488 0.86349 1.03643 1.03442 1.22808 0.97420 0.82758 0.88644 1.68038 1.09038 1.29979 1.22359 1.21088 0.89390 0.94605 0.89632 1.20733 0.99638 0.92550 1.03091 1.20641 0.98036 0.93155 1.16716 1.20498 0.90120 1.02612 1.02062 1.18509 0.88357 0.86486 0.86649 1.45200 1.08958 1.03132 1.75564 1.21734 0.95418 0.81275 1.00785 1.19328 0.94485 0.91041 0.97742 1.20985 0.93177 0.90297 1.51528 0.92264 1.24994 0.94912 0.99392 0.94948 1.69942 1.06732 1.26402 1.50248 0.86563 0.79659 0.82472 0.78786 1.20094 1.21228 1.20089 1.67851 1.07552 1.30674 1.23979 0.90040 0.89859 0.90069 0.90208 0.90337 0.90470 0.91491 0.91917 0.91156 0.75467 0.92565 0.92583 0.96064 0.96046 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.32 36.01 0.37 -0.62 16 2 C 0.35 5.79 7.64 -157.24 -1.20 4.59 16 3 N -0.57 -9.11 10.27 -7.07 -0.07 -9.18 16 4 C 0.19 2.81 6.82 -82.33 -0.56 2.24 16 5 C -0.10 -1.02 9.83 36.01 0.35 -0.67 16 6 C -0.27 -4.14 5.93 -104.15 -0.62 -4.75 16 7 C -0.10 -1.09 9.26 36.00 0.33 -0.76 16 8 C 0.45 8.00 7.50 -154.78 -1.16 6.84 16 9 N -0.70 -12.80 5.62 -60.27 -0.34 -13.14 16 10 C 0.13 2.79 5.67 -4.04 -0.02 2.76 16 11 C 0.01 0.29 5.09 -27.89 -0.14 0.15 16 12 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 16 13 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 16 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 N -0.57 -10.68 9.60 -9.97 -0.10 -10.78 16 21 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.08 0.64 6.07 -51.93 -0.31 0.32 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.73 6.67 -51.93 -0.35 0.38 16 29 H 0.07 0.65 6.07 -51.93 -0.32 0.33 16 30 H 0.41 6.76 6.60 -40.82 -0.27 6.49 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 295.13 15.07 4.45 4.45 Total: -1.00 -31.32 295.13 -8.42 -39.74 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.02 Total: 1.47 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -3.06 Total: -3.43 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: 0.23 Total: -58.57 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.32 -8.42 -39.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260109735.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.232 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds