Wall clock time and date at job start Sun Mar 29 2020 21:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99638 * 2 1 4 4 H 1.48506 * 109.47243 * 274.98941 * 3 2 1 5 5 H 1.48504 * 109.47481 * 34.98818 * 3 2 1 6 6 H 1.48497 * 109.47416 * 154.99114 * 3 2 1 7 7 C 1.37874 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99672 * 189.55798 * 7 2 1 9 9 C 1.50701 * 119.99916 * 9.54901 * 7 2 1 10 10 C 1.53118 * 109.51935 * 185.43051 * 9 7 2 11 11 C 1.53038 * 109.27879 * 182.38018 * 10 9 7 12 12 N 1.46843 * 109.52447 * 59.17718 * 11 10 9 13 13 C 1.46903 * 111.00215 * 174.16182 * 12 11 10 14 14 C 1.50698 * 109.46882 * 170.00341 * 13 12 11 15 15 C 1.39874 * 125.89680 * 94.72182 * 14 13 12 16 16 C 1.35327 * 107.91446 * 179.85948 * 15 14 13 17 17 N 1.34946 * 107.74759 * 0.39360 * 16 15 14 18 18 H 0.97000 * 126.03546 * 179.75301 * 17 16 15 19 19 N 1.30838 * 125.89744 * 275.02134 * 14 13 12 20 20 C 1.46841 * 111.19960 * 298.26177 * 12 11 10 21 21 C 1.53040 * 109.52396 * 61.74135 * 20 12 11 22 22 H 0.97000 * 120.00107 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.52481 * 305.55864 * 9 7 2 24 24 H 1.08997 * 109.50511 * 62.44200 * 10 9 7 25 25 H 1.09002 * 109.53859 * 302.33930 * 10 9 7 26 26 H 1.08998 * 109.46147 * 299.16514 * 11 10 9 27 27 H 1.08998 * 109.45395 * 179.19278 * 11 10 9 28 28 H 1.09002 * 109.47137 * 290.00455 * 13 12 11 29 29 H 1.08999 * 109.46934 * 50.00438 * 13 12 11 30 30 H 1.07996 * 126.04309 * 359.97438 * 15 14 13 31 31 H 1.07999 * 126.12266 * 180.13858 * 16 15 14 32 32 H 1.08998 * 109.46476 * 181.75482 * 20 12 11 33 33 H 1.09000 * 109.46691 * 301.72619 * 20 12 11 34 34 H 1.09001 * 109.50489 * 180.88216 * 21 20 12 35 35 H 1.08997 * 109.54023 * 60.78040 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3911 2.1074 -1.3948 5 1 1.5032 2.6200 0.8028 6 1 3.5954 1.4122 0.5919 7 6 2.0046 -1.1940 -0.0005 8 1 3.0734 -1.2005 0.1548 9 6 1.2668 -2.4900 -0.2176 10 6 2.2323 -3.6647 -0.0378 11 6 1.4920 -4.9746 -0.3176 12 7 0.9640 -4.9570 -1.6877 13 6 0.3670 -6.2525 -2.0386 14 6 -0.3758 -6.1262 -3.3437 15 6 0.1347 -6.4281 -4.6104 16 6 -0.8381 -6.1865 -5.5197 17 7 -1.9226 -5.7392 -4.8527 18 1 -2.7704 -5.4831 -5.2485 19 7 -1.6079 -5.7101 -3.4880 20 6 -0.0014 -3.8658 -1.8708 21 6 0.6944 -2.5228 -1.6374 22 1 -0.4850 0.8400 0.0004 23 1 0.4545 -2.5722 0.5046 24 1 2.6105 -3.6717 0.9844 25 1 3.0652 -3.5618 -0.7333 26 1 0.6681 -5.0839 0.3877 27 1 2.1805 -5.8120 -0.2043 28 1 1.1540 -6.9999 -2.1393 29 1 -0.3257 -6.5576 -1.2543 30 1 1.1288 -6.7915 -4.8248 31 1 -0.7591 -6.3231 -6.5881 32 1 -0.3977 -3.8979 -2.8856 33 1 -0.8183 -3.9801 -1.1582 34 1 -0.0261 -1.7138 -1.7580 35 1 1.5026 -2.4008 -2.3585 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260249414.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:59 Heat of formation + Delta-G solvation = 72.528503 kcal Electronic energy + Delta-G solvation = -16686.898765 eV Core-core repulsion = 14107.164198 eV Total energy + Delta-G solvation = -2579.734567 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.10055 -38.04819 -34.15626 -32.13639 -30.54032 -29.94996 -29.61138 -26.87515 -24.45810 -22.06761 -21.54537 -21.28198 -19.30807 -18.51094 -17.96819 -16.31556 -15.46767 -14.52643 -14.44115 -14.21961 -14.01088 -13.43418 -13.12895 -12.82791 -12.59978 -12.29107 -11.73653 -11.66995 -11.28717 -10.96822 -10.73336 -10.54608 -10.32663 -10.13597 -9.99085 -9.38950 -9.31791 -8.79624 -8.69304 -8.58155 -8.21805 -7.65728 -5.92826 -3.93460 1.96672 2.85355 2.96158 3.36101 3.43076 3.46371 4.51766 4.62663 4.81201 4.89164 5.32520 5.39381 5.67679 5.81113 5.84181 5.89519 6.00721 6.09686 6.23108 6.37465 6.43575 6.65348 6.72503 6.76544 6.93316 7.14346 7.21499 7.33746 7.46938 7.67705 7.75130 7.79039 7.90793 8.11347 8.14483 8.56037 9.10747 9.69135 11.16390 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.035673 B = 0.006101 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.715819 B = 4588.494733 C = 5022.181750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.045 3.955 10 C -0.105 4.105 11 C 0.060 3.940 12 N -0.528 5.528 13 C 0.130 3.870 14 C 0.089 3.911 15 C -0.255 4.255 16 C 0.048 3.952 17 N -0.481 5.481 18 H 0.436 0.564 19 N -0.287 5.287 20 C 0.059 3.941 21 C -0.097 4.097 22 H 0.258 0.742 23 H 0.027 0.973 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.026 0.974 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.043 0.957 30 H 0.147 0.853 31 H 0.173 0.827 32 H 0.060 0.940 33 H 0.024 0.976 34 H 0.071 0.929 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.581 -12.988 -9.143 15.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.713 3.287 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.027 3.973 10 C -0.143 4.143 11 C -0.068 4.068 12 N -0.254 5.254 13 C 0.000 4.000 14 C -0.078 4.078 15 C -0.285 4.285 16 C -0.099 4.099 17 N -0.189 5.189 18 H 0.280 0.720 19 N -0.111 5.111 20 C -0.068 4.068 21 C -0.136 4.136 22 H 0.068 0.932 23 H 0.046 0.954 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.078 0.922 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.165 0.835 31 H 0.191 0.809 32 H 0.078 0.922 33 H 0.042 0.958 34 H 0.090 0.910 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.361 -12.369 -8.859 15.396 hybrid contribution -0.028 0.695 -0.320 0.766 sum -2.390 -11.674 -9.179 15.041 Atomic orbital electron populations 1.69983 1.05930 1.26280 1.50693 1.24970 0.94728 0.98966 0.95232 0.86690 0.80084 0.83991 0.77900 1.20810 1.21452 1.19904 1.21193 0.94030 0.91072 1.48620 0.92720 1.18708 0.93987 0.91802 0.92838 1.21664 0.99192 0.93775 0.99656 1.22150 0.97838 0.99475 0.87289 1.62152 1.36186 1.01785 1.25316 1.20505 0.95705 0.93725 0.90017 1.22204 0.91694 0.97411 0.96494 1.21417 1.01437 1.14214 0.91390 1.22534 0.88197 1.00205 0.98939 1.46347 1.13847 1.53318 1.05356 0.72031 1.77413 1.16685 1.23601 0.93417 1.22287 0.92712 0.92229 0.99613 1.21579 0.99312 0.93093 0.99586 0.93203 0.95436 0.92993 0.92509 0.95581 0.92199 0.89312 0.93932 0.83514 0.80948 0.92162 0.95808 0.91026 0.93806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 12.20 55.43 0.68 -25.73 16 2 C 0.06 1.77 5.23 -17.82 -0.09 1.68 16 3 Si 0.89 21.80 29.55 -169.99 -5.02 16.78 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.44 8.48 -34.44 -0.29 -14.73 16 8 H 0.05 1.53 7.77 -52.49 -0.41 1.12 16 9 C 0.05 1.17 2.03 -91.65 -0.19 0.98 16 10 C -0.11 -2.26 5.32 -26.65 -0.14 -2.41 16 11 C 0.06 1.11 5.42 -3.84 -0.02 1.09 16 12 N -0.53 -9.92 4.80 -236.12 -1.13 -11.05 16 13 C 0.13 2.03 5.84 -4.98 -0.03 2.00 16 14 C 0.09 1.39 5.19 -82.40 -0.43 0.96 16 15 C -0.25 -3.31 10.74 -40.01 -0.43 -3.74 16 16 C 0.05 0.51 11.99 -17.22 -0.21 0.31 16 17 N -0.48 -5.77 7.36 30.45 0.22 -5.54 16 18 H 0.44 3.73 8.96 -182.61 -1.64 2.09 16 19 N -0.29 -4.64 11.41 33.67 0.38 -4.26 16 20 C 0.06 1.27 4.88 -3.84 -0.02 1.25 16 21 C -0.10 -2.41 5.19 -26.65 -0.14 -2.55 16 22 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 23 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 24 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 25 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 28 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.06 1.28 5.79 -51.93 -0.30 0.98 16 33 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 1.97 7.00 -51.93 -0.36 1.60 16 35 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 284.04 15.07 4.28 4.28 Total: -1.00 -32.19 284.04 -9.06 -41.25 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.49 Total: -0.57 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -1.98 Total: -15.16 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.15 Total: -46.58 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.19 -9.06 -41.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260249414.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.778 kcal (2) G-P(sol) polarization free energy of solvation -32.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds