Wall clock time and date at job start Sun Mar 29 2020 21:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99638 * 2 1 4 4 H 1.48506 * 109.47243 * 274.98941 * 3 2 1 5 5 H 1.48504 * 109.47481 * 34.98818 * 3 2 1 6 6 H 1.48497 * 109.47416 * 154.99114 * 3 2 1 7 7 C 1.37874 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99672 * 189.55798 * 7 2 1 9 9 C 1.50701 * 119.99916 * 9.54901 * 7 2 1 10 10 C 1.53118 * 109.51935 * 185.43051 * 9 7 2 11 11 C 1.53038 * 109.27879 * 182.38018 * 10 9 7 12 12 N 1.46843 * 109.52447 * 59.17718 * 11 10 9 13 13 C 1.46903 * 111.00215 * 174.16182 * 12 11 10 14 14 C 1.50698 * 109.46882 * 170.00341 * 13 12 11 15 15 C 1.39874 * 125.89680 * 94.72182 * 14 13 12 16 16 C 1.35327 * 107.91446 * 179.85948 * 15 14 13 17 17 N 1.34946 * 107.74759 * 0.39360 * 16 15 14 18 18 H 0.97000 * 126.03546 * 179.75301 * 17 16 15 19 19 N 1.30838 * 125.89744 * 275.02134 * 14 13 12 20 20 C 1.46841 * 111.19960 * 298.26177 * 12 11 10 21 21 C 1.53040 * 109.52396 * 61.74135 * 20 12 11 22 22 H 0.97000 * 120.00107 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.52481 * 305.55864 * 9 7 2 24 24 H 1.08997 * 109.50511 * 62.44200 * 10 9 7 25 25 H 1.09002 * 109.53859 * 302.33930 * 10 9 7 26 26 H 1.08998 * 109.46147 * 299.16514 * 11 10 9 27 27 H 1.08998 * 109.45395 * 179.19278 * 11 10 9 28 28 H 1.09002 * 109.47137 * 290.00455 * 13 12 11 29 29 H 1.08999 * 109.46934 * 50.00438 * 13 12 11 30 30 H 1.07996 * 126.04309 * 359.97438 * 15 14 13 31 31 H 1.07999 * 126.12266 * 180.13858 * 16 15 14 32 32 H 1.08998 * 109.46476 * 181.75482 * 20 12 11 33 33 H 1.09000 * 109.46691 * 301.72619 * 20 12 11 34 34 H 1.09001 * 109.50489 * 180.88216 * 21 20 12 35 35 H 1.08997 * 109.54023 * 60.78040 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3911 2.1074 -1.3948 5 1 1.5032 2.6200 0.8028 6 1 3.5954 1.4122 0.5919 7 6 2.0046 -1.1940 -0.0005 8 1 3.0734 -1.2005 0.1548 9 6 1.2668 -2.4900 -0.2176 10 6 2.2323 -3.6647 -0.0378 11 6 1.4920 -4.9746 -0.3176 12 7 0.9640 -4.9570 -1.6877 13 6 0.3670 -6.2525 -2.0386 14 6 -0.3758 -6.1262 -3.3437 15 6 0.1347 -6.4281 -4.6104 16 6 -0.8381 -6.1865 -5.5197 17 7 -1.9226 -5.7392 -4.8527 18 1 -2.7704 -5.4831 -5.2485 19 7 -1.6079 -5.7101 -3.4880 20 6 -0.0014 -3.8658 -1.8708 21 6 0.6944 -2.5228 -1.6374 22 1 -0.4850 0.8400 0.0004 23 1 0.4545 -2.5722 0.5046 24 1 2.6105 -3.6717 0.9844 25 1 3.0652 -3.5618 -0.7333 26 1 0.6681 -5.0839 0.3877 27 1 2.1805 -5.8120 -0.2043 28 1 1.1540 -6.9999 -2.1393 29 1 -0.3257 -6.5576 -1.2543 30 1 1.1288 -6.7915 -4.8248 31 1 -0.7591 -6.3231 -6.5881 32 1 -0.3977 -3.8979 -2.8856 33 1 -0.8183 -3.9801 -1.1582 34 1 -0.0261 -1.7138 -1.7580 35 1 1.5026 -2.4008 -2.3585 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260249414.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:58 Heat of formation + Delta-G solvation = 49.874924 kcal Electronic energy + Delta-G solvation = -16687.881098 eV Core-core repulsion = 14107.164198 eV Total energy + Delta-G solvation = -2580.716900 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.09933 -39.68169 -35.93752 -33.83783 -32.06934 -31.46965 -30.78958 -28.51203 -26.24150 -23.80773 -23.26451 -22.25437 -20.53919 -20.25913 -18.91402 -18.44023 -17.05680 -16.38268 -15.84411 -15.63404 -15.21386 -14.81469 -14.49281 -14.33101 -14.19705 -14.13600 -13.22317 -13.10734 -12.99454 -12.85402 -12.59436 -12.24207 -12.06663 -11.89799 -11.53941 -11.35313 -10.77518 -10.67402 -10.41964 -10.35621 -9.58434 -9.18175 -8.11734 -6.20435 1.01184 1.40201 1.41568 1.52174 1.83676 2.10207 2.44140 3.17776 3.20804 3.75878 3.99558 4.23718 4.30138 4.36638 4.44790 4.55914 4.65000 4.78473 4.84730 4.90465 4.94789 5.00666 5.08251 5.17415 5.24190 5.32452 5.50229 5.62773 5.72009 5.94101 5.98473 6.20787 6.30340 6.39879 6.55074 6.78788 6.92477 7.46294 8.97098 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.035673 B = 0.006101 C = 0.005574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.715819 B = 4588.494733 C = 5022.181750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.010 3.990 3 Si 0.953 3.047 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.531 4.531 8 H 0.055 0.945 9 C 0.042 3.958 10 C -0.098 4.098 11 C 0.064 3.936 12 N -0.529 5.529 13 C 0.131 3.869 14 C 0.067 3.933 15 C -0.277 4.277 16 C 0.070 3.930 17 N -0.475 5.475 18 H 0.449 0.551 19 N -0.337 5.337 20 C 0.080 3.920 21 C -0.086 4.086 22 H 0.259 0.741 23 H -0.012 1.012 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.019 0.981 27 H 0.101 0.899 28 H 0.121 0.879 29 H 0.038 0.962 30 H 0.164 0.836 31 H 0.222 0.778 32 H 0.062 0.938 33 H 0.001 0.999 34 H 0.034 0.966 35 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.322 -14.145 -10.638 17.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.188 4.188 3 Si 0.778 3.222 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.569 4.569 8 H 0.074 0.926 9 C 0.023 3.977 10 C -0.136 4.136 11 C -0.063 4.063 12 N -0.255 5.255 13 C 0.002 3.998 14 C -0.099 4.099 15 C -0.306 4.306 16 C -0.078 4.078 17 N -0.185 5.185 18 H 0.295 0.705 19 N -0.163 5.163 20 C -0.048 4.048 21 C -0.125 4.125 22 H 0.068 0.932 23 H 0.007 0.993 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.037 0.963 27 H 0.119 0.881 28 H 0.139 0.861 29 H 0.057 0.943 30 H 0.182 0.818 31 H 0.238 0.762 32 H 0.081 0.919 33 H 0.019 0.981 34 H 0.053 0.947 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.101 -13.542 -10.349 17.079 hybrid contribution -0.466 1.021 0.090 1.126 sum -1.567 -12.520 -10.259 16.262 Atomic orbital electron populations 1.70124 1.07521 1.27128 1.51516 1.25799 0.95531 1.02622 0.94835 0.85626 0.79042 0.79468 0.78054 1.20259 1.21077 1.18811 1.21585 0.94243 0.92466 1.48613 0.92646 1.18680 0.93661 0.93176 0.92190 1.21536 0.98312 0.93657 1.00115 1.22129 0.98092 0.99032 0.87053 1.62106 1.35446 1.02608 1.25354 1.20620 0.96654 0.92222 0.90301 1.22336 0.91923 0.98283 0.97377 1.21745 1.02931 1.15257 0.90706 1.23276 0.86565 0.97172 1.00753 1.46410 1.15002 1.52721 1.04320 0.70489 1.77317 1.17612 1.25417 0.95975 1.21910 0.92156 0.91708 0.99004 1.21351 0.98202 0.94085 0.98846 0.93201 0.99349 0.92399 0.92415 0.96307 0.88051 0.86107 0.94339 0.81818 0.76156 0.91926 0.98056 0.94679 0.94440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.55 12.20 21.45 0.26 -56.29 16 2 C 0.01 0.60 5.23 84.65 0.44 1.04 16 3 Si 0.95 45.17 29.55 68.60 2.03 47.20 16 4 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 6 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.53 -30.58 8.48 25.60 0.22 -30.36 16 8 H 0.06 3.10 7.77 -2.91 -0.02 3.08 16 9 C 0.04 2.21 2.03 -11.46 -0.02 2.19 16 10 C -0.10 -4.20 5.32 30.65 0.16 -4.04 16 11 C 0.06 2.29 5.42 86.33 0.47 2.76 16 12 N -0.53 -19.33 4.80 -900.95 -4.32 -23.65 16 13 C 0.13 3.86 5.84 85.56 0.50 4.36 16 14 C 0.07 1.99 5.19 43.10 0.22 2.21 16 15 C -0.28 -6.46 10.74 21.99 0.24 -6.22 16 16 C 0.07 1.26 11.99 83.54 1.00 2.26 16 17 N -0.48 -10.52 7.36 -57.59 -0.42 -10.95 16 18 H 0.45 6.89 8.96 -213.33 -1.91 4.98 16 19 N -0.34 -10.75 11.41 -47.38 -0.54 -11.29 16 20 C 0.08 3.53 4.88 86.33 0.42 3.95 16 21 C -0.09 -4.43 5.19 30.65 0.16 -4.27 16 22 H 0.26 15.06 8.31 -92.71 -0.77 14.28 16 23 H -0.01 -0.71 8.09 -2.39 -0.02 -0.73 16 24 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.06 2.44 8.14 -2.39 -0.02 2.43 16 26 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.10 2.83 8.12 -2.39 -0.02 2.81 16 28 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.04 1.17 8.08 -2.39 -0.02 1.15 16 30 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 31 H 0.22 1.63 8.06 -2.91 -0.02 1.60 16 32 H 0.06 2.71 5.79 -2.39 -0.01 2.70 16 33 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.03 2.01 7.00 -2.39 -0.02 2.00 16 35 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -71.93 284.04 -0.03 -71.96 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -0.84 Total: 9.14 kcal Atomic # 6 Polarization: -29.93 SS G_CDS: 3.81 Total: -26.12 kcal Atomic # 7 Polarization: -97.15 SS G_CDS: -5.03 Total: -102.17 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -71.93 -0.03 -71.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260249414.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.831 kcal (2) G-P(sol) polarization free energy of solvation -71.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds