Wall clock time and date at job start Sun Mar 29 2020 21:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31826 * 119.07200 * 2 1 4 4 C 1.32541 * 121.02015 * 180.02562 * 3 2 1 5 5 C 1.50693 * 120.40003 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47180 * 95.02363 * 5 4 3 7 7 C 1.52999 * 109.46965 * 215.02328 * 5 4 3 8 8 C 1.38167 * 119.19390 * 359.97438 * 4 3 2 9 9 C 1.39672 * 118.32385 * 0.02562 * 8 4 3 10 10 N 1.38524 * 120.53768 * 179.97438 * 9 8 4 11 11 C 1.46501 * 120.00102 * 184.99846 * 10 9 8 12 12 C 1.36934 * 120.00025 * 5.00250 * 10 9 8 13 13 H 1.08002 * 120.00262 * 24.14017 * 12 10 9 14 14 C 1.38852 * 119.99694 * 204.14537 * 12 10 9 15 15 N 1.31535 * 120.00358 * 10.56178 * 14 12 10 16 16 Si 1.86806 * 119.99689 * 190.56276 * 14 12 10 17 17 H 1.48500 * 109.47042 * 84.95382 * 16 14 12 18 18 H 1.48504 * 109.46857 * 204.95488 * 16 14 12 19 19 H 1.48505 * 109.47269 * 324.95359 * 16 14 12 20 20 N 1.31702 * 119.07806 * 180.02562 * 2 1 3 21 21 H 1.08999 * 109.47356 * 89.99857 * 1 2 3 22 22 H 1.09003 * 109.46732 * 209.99931 * 1 2 3 23 23 H 1.09004 * 109.46776 * 329.99617 * 1 2 3 24 24 H 1.09005 * 109.47260 * 335.02188 * 5 4 3 25 25 H 1.08998 * 109.47528 * 59.99585 * 6 5 4 26 26 H 1.09005 * 109.47336 * 180.02562 * 6 5 4 27 27 H 1.09001 * 109.47111 * 299.99482 * 6 5 4 28 28 H 1.08997 * 109.47675 * 59.99743 * 7 5 4 29 29 H 1.09002 * 109.47345 * 180.02562 * 7 5 4 30 30 H 1.09005 * 109.47017 * 300.00008 * 7 5 4 31 31 H 1.08000 * 120.83916 * 179.72361 * 8 4 3 32 32 H 1.08998 * 109.47134 * 93.76562 * 11 10 9 33 33 H 1.08998 * 109.47002 * 213.76894 * 11 10 9 34 34 H 1.09000 * 109.46733 * 333.76519 * 11 10 9 35 35 H 0.96992 * 119.99764 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1476 1.1522 0.0000 4 6 3.4722 1.1972 -0.0005 5 6 4.1902 2.5222 -0.0011 6 6 4.5448 2.9107 1.4356 7 6 5.4714 2.4075 -0.8294 8 6 4.1868 0.0147 -0.0005 9 6 3.4772 -1.1884 -0.0005 10 7 4.1472 -2.4008 -0.0010 11 6 3.3953 -3.6532 -0.1116 12 6 5.5124 -2.4286 0.1018 13 1 6.0364 -1.6032 0.5609 14 6 6.2232 -3.5179 -0.3841 15 7 5.6176 -4.4215 -1.1238 16 14 8.0395 -3.7003 0.0126 17 1 8.1937 -4.3671 1.3305 18 1 8.6954 -4.5208 -1.0371 19 1 8.6731 -2.3581 0.0597 20 7 2.1471 -1.1510 -0.0005 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 3.5441 3.2854 -0.4350 25 1 5.1908 2.1476 1.8696 26 1 5.0637 3.8693 1.4353 27 1 3.6319 2.9924 2.0257 28 1 5.2189 2.1307 -1.8529 29 1 5.9910 3.3657 -0.8295 30 1 6.1175 1.6443 -0.3955 31 1 5.2668 0.0204 -0.0054 32 1 3.3444 -3.9553 -1.1576 33 1 3.8958 -4.4297 0.4669 34 1 2.3864 -3.5064 0.2738 35 1 6.1140 -5.1826 -1.4629 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260344720.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:40 Heat of formation + Delta-G solvation = 42.490572 kcal Electronic energy + Delta-G solvation = -16778.789110 eV Core-core repulsion = 14197.752000 eV Total energy + Delta-G solvation = -2581.037110 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.86152 -36.55121 -35.43750 -32.56166 -31.07741 -30.40056 -27.88486 -26.81363 -26.11012 -24.49734 -22.95176 -21.00167 -19.35661 -17.52233 -16.43799 -16.16725 -14.75442 -14.39801 -13.98081 -13.86665 -13.82252 -13.14968 -12.99531 -12.84759 -12.71905 -11.91412 -11.87962 -11.67647 -11.47497 -11.29142 -11.01733 -10.87006 -10.84227 -10.64800 -10.52115 -10.49722 -9.83381 -9.34126 -9.10799 -8.50123 -7.96422 -7.14509 -6.51680 -4.00831 2.21934 2.53664 3.09218 3.09567 3.12504 3.89025 4.62090 4.67328 4.83857 5.07789 5.18572 5.39516 5.56456 5.63140 5.90134 5.97057 6.09410 6.11238 6.15586 6.22776 6.25316 6.30231 6.41259 6.56377 6.64864 6.68142 6.77382 6.91272 6.94683 7.23011 7.27402 7.54139 7.88406 8.18575 8.57038 9.10404 9.26151 9.68269 10.46265 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.008977 C = 0.006713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.143091 B = 3118.166831 C = 4169.841115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.346 3.654 3 N -0.608 5.608 4 C 0.189 3.811 5 C -0.039 4.039 6 C -0.136 4.136 7 C -0.144 4.144 8 C -0.297 4.297 9 C 0.384 3.616 10 N -0.406 5.406 11 C 0.124 3.876 12 C -0.313 4.313 13 H 0.099 0.901 14 C 0.035 3.965 15 N -0.864 5.864 16 Si 0.932 3.068 17 H -0.274 1.274 18 H -0.281 1.281 19 H -0.267 1.267 20 N -0.603 5.603 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.130 0.870 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.398 7.249 2.039 7.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.074 3.926 3 N -0.335 5.335 4 C 0.051 3.949 5 C -0.059 4.059 6 C -0.194 4.194 7 C -0.201 4.201 8 C -0.328 4.328 9 C 0.138 3.862 10 N -0.095 5.095 11 C -0.019 4.019 12 C -0.442 4.442 13 H 0.116 0.884 14 C -0.172 4.172 15 N -0.499 5.499 16 Si 0.758 3.242 17 H -0.200 1.200 18 H -0.206 1.206 19 H -0.192 1.192 20 N -0.333 5.333 21 H 0.090 0.910 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.099 0.901 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.148 0.852 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.089 6.703 1.920 7.279 hybrid contribution 1.883 -0.403 0.039 1.926 sum -0.206 6.299 1.959 6.600 Atomic orbital electron populations 1.20338 0.87825 1.02532 1.02461 1.22405 0.96501 0.83500 0.90176 1.67845 1.09080 1.29643 1.26916 1.20842 0.89525 0.93823 0.90754 1.19895 0.95819 0.93549 0.96604 1.21746 1.01396 1.00776 0.95494 1.21871 0.96786 1.01450 1.00036 1.21601 1.01354 0.91944 1.17918 1.18550 0.87677 0.86982 0.93028 1.42466 1.05263 1.01451 1.60333 1.21421 0.93323 0.85268 1.01895 1.19643 0.80282 1.06876 1.37430 0.88385 1.25463 1.00751 0.96196 0.94785 1.70079 1.37399 1.12076 1.30370 0.85849 0.81143 0.78896 0.78327 1.19969 1.20580 1.19150 1.67589 1.08244 1.30328 1.27181 0.91002 0.90866 0.90855 0.90082 0.92517 0.92605 0.92641 0.92602 0.92715 0.91863 0.85212 0.92383 0.92240 0.93653 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.18 10.32 36.01 0.37 -0.80 16 2 C 0.35 7.41 7.64 -157.24 -1.20 6.21 16 3 N -0.61 -13.02 10.27 -7.06 -0.07 -13.10 16 4 C 0.19 3.91 5.82 -82.32 -0.48 3.43 16 5 C -0.04 -0.64 3.27 -91.78 -0.30 -0.94 16 6 C -0.14 -1.95 9.18 37.16 0.34 -1.61 16 7 C -0.14 -2.13 8.64 37.16 0.32 -1.81 16 8 C -0.30 -6.80 8.41 -39.07 -0.33 -7.13 16 9 C 0.38 9.63 7.36 -154.72 -1.14 8.49 16 10 N -0.41 -10.53 3.11 -122.22 -0.38 -10.91 16 11 C 0.12 3.04 8.79 59.85 0.53 3.57 16 12 C -0.31 -8.08 8.94 -15.05 -0.13 -8.22 16 13 H 0.10 2.44 6.41 -52.49 -0.34 2.11 16 14 C 0.03 0.87 5.14 -17.45 -0.09 0.78 16 15 N -0.86 -22.47 10.65 55.49 0.59 -21.87 16 16 Si 0.93 19.31 29.57 -169.99 -5.03 14.28 16 17 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 18 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 19 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 20 N -0.60 -14.42 9.07 -9.94 -0.09 -14.51 16 21 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 22 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 23 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.98 6.57 -51.93 -0.34 0.64 16 31 H 0.13 2.90 4.80 -52.49 -0.25 2.65 16 32 H 0.06 1.49 7.41 -51.93 -0.38 1.11 16 33 H 0.06 1.46 7.26 -51.93 -0.38 1.09 16 34 H 0.04 1.05 7.22 -51.93 -0.37 0.67 16 35 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 288.74 15.07 4.35 4.35 Total: -1.00 -28.54 288.74 -7.74 -36.29 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.01 Total: 3.49 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -2.11 Total: 1.98 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: 0.05 Total: -60.39 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.54 -7.74 -36.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260344720.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.777 kcal (2) G-P(sol) polarization free energy of solvation -28.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds