Wall clock time and date at job start Sun Mar 29 2020 21:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31826 * 119.07200 * 2 1 4 4 C 1.32541 * 121.02015 * 180.02562 * 3 2 1 5 5 C 1.50693 * 120.40003 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47180 * 95.02363 * 5 4 3 7 7 C 1.52999 * 109.46965 * 215.02328 * 5 4 3 8 8 C 1.38167 * 119.19390 * 359.97438 * 4 3 2 9 9 C 1.39672 * 118.32385 * 0.02562 * 8 4 3 10 10 N 1.38524 * 120.53768 * 179.97438 * 9 8 4 11 11 C 1.46501 * 120.00102 * 184.99846 * 10 9 8 12 12 C 1.36934 * 120.00025 * 5.00250 * 10 9 8 13 13 H 1.08002 * 120.00262 * 24.14017 * 12 10 9 14 14 C 1.38852 * 119.99694 * 204.14537 * 12 10 9 15 15 N 1.31535 * 120.00358 * 10.56178 * 14 12 10 16 16 Si 1.86806 * 119.99689 * 190.56276 * 14 12 10 17 17 H 1.48500 * 109.47042 * 84.95382 * 16 14 12 18 18 H 1.48504 * 109.46857 * 204.95488 * 16 14 12 19 19 H 1.48505 * 109.47269 * 324.95359 * 16 14 12 20 20 N 1.31702 * 119.07806 * 180.02562 * 2 1 3 21 21 H 1.08999 * 109.47356 * 89.99857 * 1 2 3 22 22 H 1.09003 * 109.46732 * 209.99931 * 1 2 3 23 23 H 1.09004 * 109.46776 * 329.99617 * 1 2 3 24 24 H 1.09005 * 109.47260 * 335.02188 * 5 4 3 25 25 H 1.08998 * 109.47528 * 59.99585 * 6 5 4 26 26 H 1.09005 * 109.47336 * 180.02562 * 6 5 4 27 27 H 1.09001 * 109.47111 * 299.99482 * 6 5 4 28 28 H 1.08997 * 109.47675 * 59.99743 * 7 5 4 29 29 H 1.09002 * 109.47345 * 180.02562 * 7 5 4 30 30 H 1.09005 * 109.47017 * 300.00008 * 7 5 4 31 31 H 1.08000 * 120.83916 * 179.72361 * 8 4 3 32 32 H 1.08998 * 109.47134 * 93.76562 * 11 10 9 33 33 H 1.08998 * 109.47002 * 213.76894 * 11 10 9 34 34 H 1.09000 * 109.46733 * 333.76519 * 11 10 9 35 35 H 0.96992 * 119.99764 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1476 1.1522 0.0000 4 6 3.4722 1.1972 -0.0005 5 6 4.1902 2.5222 -0.0011 6 6 4.5448 2.9107 1.4356 7 6 5.4714 2.4075 -0.8294 8 6 4.1868 0.0147 -0.0005 9 6 3.4772 -1.1884 -0.0005 10 7 4.1472 -2.4008 -0.0010 11 6 3.3953 -3.6532 -0.1116 12 6 5.5124 -2.4286 0.1018 13 1 6.0364 -1.6032 0.5609 14 6 6.2232 -3.5179 -0.3841 15 7 5.6176 -4.4215 -1.1238 16 14 8.0395 -3.7003 0.0126 17 1 8.1937 -4.3671 1.3305 18 1 8.6954 -4.5208 -1.0371 19 1 8.6731 -2.3581 0.0597 20 7 2.1471 -1.1510 -0.0005 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 3.5441 3.2854 -0.4350 25 1 5.1908 2.1476 1.8696 26 1 5.0637 3.8693 1.4353 27 1 3.6319 2.9924 2.0257 28 1 5.2189 2.1307 -1.8529 29 1 5.9910 3.3657 -0.8295 30 1 6.1175 1.6443 -0.3955 31 1 5.2668 0.0204 -0.0054 32 1 3.3444 -3.9553 -1.1576 33 1 3.8958 -4.4297 0.4669 34 1 2.3864 -3.5064 0.2738 35 1 6.1140 -5.1826 -1.4629 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260344720.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:40 Heat of formation + Delta-G solvation = 27.400633 kcal Electronic energy + Delta-G solvation = -16779.443458 eV Core-core repulsion = 14197.752000 eV Total energy + Delta-G solvation = -2581.691458 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.59826 -38.36610 -36.88701 -34.40117 -32.64319 -32.17196 -29.53777 -28.15699 -27.76193 -26.33122 -24.51058 -22.78051 -20.83153 -19.36368 -18.22797 -17.91922 -16.48240 -16.09442 -15.69493 -15.46352 -15.20682 -14.91067 -14.67154 -14.31625 -14.01116 -13.44335 -13.18736 -13.09592 -13.05340 -12.89888 -12.69185 -12.60268 -12.23643 -12.14167 -12.11084 -11.85760 -11.60336 -11.07100 -10.93617 -10.25321 -9.74404 -9.02087 -8.39730 -5.96985 0.50168 0.74997 1.40043 1.46227 1.52753 2.16448 2.82305 2.84688 3.30555 3.35425 3.64204 4.06453 4.23453 4.30058 4.50230 4.65223 4.71490 4.76377 4.84294 4.85705 4.86705 4.92796 4.97400 4.99191 5.05126 5.20850 5.24850 5.27064 5.31245 5.39405 5.47188 5.78226 6.08021 6.36136 6.71146 7.20902 7.43258 7.85884 8.59664 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.008977 C = 0.006713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.143091 B = 3118.166831 C = 4169.841115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.332 3.668 3 N -0.608 5.608 4 C 0.194 3.806 5 C -0.039 4.039 6 C -0.130 4.130 7 C -0.139 4.139 8 C -0.317 4.317 9 C 0.366 3.634 10 N -0.431 5.431 11 C 0.144 3.856 12 C -0.336 4.336 13 H 0.099 0.901 14 C -0.008 4.008 15 N -0.897 5.897 16 Si 1.000 3.000 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.258 1.258 20 N -0.623 5.623 21 H 0.089 0.911 22 H 0.081 0.919 23 H 0.094 0.906 24 H 0.093 0.907 25 H 0.045 0.955 26 H 0.090 0.910 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.129 0.871 32 H 0.037 0.963 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.082 9.246 2.450 9.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.062 3.938 3 N -0.334 5.334 4 C 0.054 3.946 5 C -0.058 4.058 6 C -0.188 4.188 7 C -0.197 4.197 8 C -0.347 4.347 9 C 0.121 3.879 10 N -0.123 5.123 11 C 0.000 4.000 12 C -0.464 4.464 13 H 0.116 0.884 14 C -0.211 4.211 15 N -0.533 5.533 16 Si 0.822 3.178 17 H -0.194 1.194 18 H -0.203 1.203 19 H -0.182 1.182 20 N -0.354 5.354 21 H 0.107 0.893 22 H 0.100 0.900 23 H 0.113 0.887 24 H 0.111 0.889 25 H 0.065 0.935 26 H 0.109 0.891 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.147 0.853 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.807 8.731 2.337 9.217 hybrid contribution 1.634 -0.871 -0.099 1.854 sum -0.173 7.860 2.238 8.174 Atomic orbital electron populations 1.20484 0.84124 1.04047 1.04001 1.23482 0.98794 0.82926 0.88590 1.68042 1.09367 1.29507 1.26464 1.21617 0.89517 0.95247 0.88200 1.20072 0.96181 0.91156 0.98410 1.21714 1.01272 1.02202 0.93608 1.21845 0.96063 1.02991 0.98799 1.21709 1.01497 0.92142 1.19380 1.19020 0.88600 0.87497 0.92761 1.42619 1.05552 1.01833 1.62279 1.21142 0.93439 0.85050 1.00330 1.19888 0.80624 1.07590 1.38336 0.88361 1.26361 1.04961 0.95525 0.94230 1.70185 1.39035 1.12646 1.31409 0.84830 0.75737 0.79108 0.78084 1.19415 1.20323 1.18193 1.67677 1.07916 1.31713 1.28061 0.89267 0.89971 0.88708 0.88889 0.93534 0.89129 0.93248 0.93776 0.89200 0.93066 0.85326 0.94403 0.93197 0.92956 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.05 10.32 71.24 0.73 -1.31 16 2 C 0.33 13.91 7.64 138.77 1.06 14.97 16 3 N -0.61 -25.15 10.27 -176.26 -1.81 -26.96 16 4 C 0.19 7.83 5.82 42.43 0.25 8.08 16 5 C -0.04 -1.18 3.27 -11.54 -0.04 -1.22 16 6 C -0.13 -3.37 9.18 71.98 0.66 -2.71 16 7 C -0.14 -3.82 8.64 71.98 0.62 -3.20 16 8 C -0.32 -14.60 8.41 22.60 0.19 -14.41 16 9 C 0.37 18.71 7.36 133.16 0.98 19.69 16 10 N -0.43 -23.06 3.11 -540.59 -1.68 -24.74 16 11 C 0.14 7.33 8.79 127.77 1.12 8.45 16 12 C -0.34 -17.76 8.94 84.04 0.75 -17.01 16 13 H 0.10 5.01 6.41 -2.91 -0.02 4.99 16 14 C -0.01 -0.39 5.14 84.88 0.44 0.05 16 15 N -0.90 -47.80 10.65 21.65 0.23 -47.57 16 16 Si 1.00 39.69 29.57 68.60 2.03 41.72 16 17 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 18 H -0.28 -10.82 7.11 99.48 0.71 -10.12 16 19 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 20 N -0.62 -29.91 9.07 -185.37 -1.68 -31.59 16 21 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 22 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 23 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 24 H 0.09 2.63 8.14 -2.38 -0.02 2.61 16 25 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 27 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.05 1.52 6.57 -2.38 -0.02 1.51 16 31 H 0.13 5.86 4.80 -2.91 -0.01 5.85 16 32 H 0.04 2.03 7.41 -2.39 -0.02 2.01 16 33 H 0.05 2.56 7.26 -2.39 -0.02 2.54 16 34 H 0.05 2.50 7.22 -2.39 -0.02 2.48 16 35 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -62.11 288.74 4.93 -57.18 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 1.07 Total: 20.58 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 6.77 Total: 11.38 kcal Atomic # 7 Polarization: -125.92 SS G_CDS: -4.94 Total: -130.86 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Total: -62.11 4.93 -57.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260344720.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.582 kcal (2) G-P(sol) polarization free energy of solvation -62.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds