Wall clock time and date at job start Sun Mar 29 2020 21:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30838 * 125.89685 * 2 1 4 4 N 1.40086 * 108.20621 * 180.26112 * 3 2 1 5 5 H 0.96998 * 126.03828 * 179.70132 * 4 3 2 6 6 C 1.34949 * 107.92117 * 359.72125 * 4 3 2 7 7 C 1.50703 * 126.12668 * 180.02562 * 6 4 3 8 8 C 1.35317 * 107.74737 * 359.97438 * 6 4 3 9 9 C 1.50697 * 126.03826 * 179.97438 * 8 6 4 10 10 N 1.46500 * 109.47180 * 90.00358 * 9 8 6 11 11 C 1.36931 * 120.00035 * 89.99686 * 10 9 8 12 12 H 1.08000 * 120.00396 * 216.54317 * 11 10 9 13 13 C 1.38812 * 120.00252 * 36.54608 * 11 10 9 14 14 N 1.31621 * 119.99830 * 19.91066 * 13 11 10 15 15 Si 1.86799 * 120.00359 * 199.91327 * 13 11 10 16 16 H 1.48502 * 109.47198 * 180.02562 * 15 13 11 17 17 H 1.48500 * 109.46827 * 299.99492 * 15 13 11 18 18 H 1.48499 * 109.47274 * 59.99453 * 15 13 11 19 19 C 1.46494 * 119.99990 * 269.99949 * 10 9 8 20 20 C 1.52996 * 117.50108 * 193.32956 * 19 10 9 21 21 C 1.53002 * 60.00155 * 252.50641 * 20 19 10 22 22 H 1.09004 * 109.46860 * 270.20736 * 1 2 3 23 23 H 1.09003 * 109.47392 * 30.20288 * 1 2 3 24 24 H 1.08993 * 109.47237 * 150.21109 * 1 2 3 25 25 H 1.08998 * 109.47106 * 269.97602 * 7 6 4 26 26 H 1.09005 * 109.46866 * 29.97976 * 7 6 4 27 27 H 1.09004 * 109.47138 * 149.97379 * 7 6 4 28 28 H 1.09004 * 109.47472 * 330.00175 * 9 8 6 29 29 H 1.09009 * 109.47221 * 210.00500 * 9 8 6 30 30 H 0.97001 * 119.99898 * 180.76708 * 14 13 11 31 31 H 1.09007 * 115.55095 * 339.03434 * 19 10 9 32 32 H 1.09003 * 117.49923 * 359.97438 * 20 19 10 33 33 H 1.09003 * 117.50057 * 145.01654 * 20 19 10 34 34 H 1.08992 * 117.50000 * 252.50780 * 21 20 19 35 35 H 1.08997 * 117.51251 * 107.47369 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0061 5 1 4.3908 1.2081 -0.0115 6 6 3.6142 -0.7153 -0.0034 7 6 4.8350 -1.5989 -0.0075 8 6 2.3271 -1.1329 0.0046 9 6 1.8600 -2.5657 0.0095 10 7 1.7164 -3.0278 1.3923 11 6 0.5220 -2.8761 2.0444 12 1 0.5081 -2.6386 3.0978 13 6 -0.6713 -3.0276 1.3515 14 7 -0.6908 -3.6828 0.2101 15 14 -2.2492 -2.3017 2.0388 16 1 -3.3743 -2.6005 1.1168 17 1 -2.5293 -2.8973 3.3700 18 1 -2.0986 -0.8308 2.1764 19 6 2.8508 -3.6522 2.0774 20 6 2.5661 -4.3899 3.3871 21 6 3.2933 -3.0440 3.4098 22 1 -0.3633 0.0037 1.0277 23 1 -0.3634 0.8882 -0.5170 24 1 -0.3633 -0.8918 -0.5105 25 1 5.1242 -1.8143 -1.0361 26 1 5.6537 -1.0897 0.5012 27 1 4.6101 -2.5317 0.5097 28 1 2.5905 -3.1879 -0.5076 29 1 0.8982 -2.6360 -0.4988 30 1 -1.5226 -3.7791 -0.2796 31 1 3.6258 -4.0596 1.4281 32 1 1.5348 -4.4104 3.7393 33 1 3.1537 -5.2831 3.5997 34 1 4.3592 -3.0516 3.6372 35 1 2.7405 -2.1791 3.7764 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271128358.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:09 Heat of formation + Delta-G solvation = 114.648275 kcal Electronic energy + Delta-G solvation = -17412.437588 eV Core-core repulsion = 14834.529472 eV Total energy + Delta-G solvation = -2577.908117 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.54156 -36.93074 -33.70995 -32.62545 -31.56776 -29.87392 -27.48484 -26.63496 -25.01046 -23.08161 -21.32270 -19.92795 -19.39804 -18.57007 -16.71337 -16.08542 -15.26973 -14.61819 -14.21573 -13.96850 -13.21001 -12.86714 -12.78857 -12.57129 -12.33233 -11.96164 -11.79251 -11.70937 -11.23074 -10.93565 -10.67594 -10.64333 -10.54071 -10.15992 -9.97145 -9.80369 -9.46848 -9.26343 -8.49004 -8.36781 -7.53721 -6.47230 -5.75590 -3.33375 2.54625 3.36355 3.43219 3.44869 3.50621 3.58930 4.48148 4.99434 5.28715 5.38137 5.43617 5.46881 5.57706 5.80866 5.90469 6.04714 6.10548 6.25405 6.28403 6.38027 6.47250 6.51205 6.55230 6.65325 6.88171 6.93121 7.00706 7.11976 7.20857 7.52581 7.73675 7.84412 7.98354 8.44195 8.56103 9.21102 9.83509 10.39982 11.22412 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.019758 B = 0.012903 C = 0.009080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.817326 B = 2169.578277 C = 3082.900379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.101 3.899 3 N -0.320 5.320 4 N -0.492 5.492 5 H 0.425 0.575 6 C 0.065 3.935 7 C -0.086 4.086 8 C -0.209 4.209 9 C 0.210 3.790 10 N -0.541 5.541 11 C -0.248 4.248 12 H 0.057 0.943 13 C 0.020 3.980 14 N -0.886 5.886 15 Si 0.885 3.115 16 H -0.288 1.288 17 H -0.283 1.283 18 H -0.277 1.277 19 C 0.133 3.867 20 C -0.198 4.198 21 C -0.229 4.229 22 H 0.077 0.923 23 H 0.053 0.947 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.030 0.970 29 H 0.110 0.890 30 H 0.256 0.744 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.881 3.059 -1.186 8.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.066 4.066 3 N -0.145 5.145 4 N -0.201 5.201 5 H 0.267 0.733 6 C -0.062 4.062 7 C -0.144 4.144 8 C -0.222 4.222 9 C 0.083 3.917 10 N -0.256 5.256 11 C -0.378 4.378 12 H 0.075 0.925 13 C -0.180 4.180 14 N -0.529 5.529 15 Si 0.714 3.286 16 H -0.214 1.214 17 H -0.209 1.209 18 H -0.203 1.203 19 C 0.023 3.977 20 C -0.237 4.237 21 C -0.270 4.270 22 H 0.096 0.904 23 H 0.072 0.928 24 H 0.104 0.896 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.106 0.894 28 H 0.048 0.952 29 H 0.127 0.873 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.692 4.222 -1.344 8.877 hybrid contribution -0.304 -0.029 0.636 0.705 sum 7.388 4.194 -0.708 8.525 Atomic orbital electron populations 1.20219 0.87210 1.02152 1.03245 1.22155 0.96680 0.90333 0.97394 1.77112 0.86572 1.22823 1.27960 1.46008 1.06832 1.04771 1.62504 0.73268 1.20801 0.97111 0.84455 1.03845 1.20389 0.92788 0.99000 1.02244 1.21085 0.90224 0.99605 1.11328 1.19422 1.01659 0.84473 0.86111 1.43370 1.07096 1.63984 1.11115 1.18839 0.82640 1.41737 0.94565 0.92490 1.25014 0.97344 0.97961 0.97699 1.69940 1.26344 1.40013 1.16606 0.86704 0.83420 0.79881 0.78574 1.21414 1.20948 1.20323 1.21086 0.92831 0.97273 0.86531 1.23076 1.01341 0.93698 1.05572 1.23337 0.97958 0.97030 1.08636 0.90421 0.92783 0.89645 0.91229 0.92210 0.89434 0.95192 0.87267 0.93406 0.89648 0.88385 0.90942 0.91270 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.44 10.17 36.01 0.37 -1.07 16 2 C 0.10 2.17 7.22 -82.41 -0.59 1.58 16 3 N -0.32 -6.56 12.70 33.67 0.43 -6.13 16 4 N -0.49 -8.48 7.36 33.48 0.25 -8.23 16 5 H 0.43 5.64 8.96 -182.61 -1.64 4.00 16 6 C 0.07 1.17 7.21 -82.26 -0.59 0.57 16 7 C -0.09 -1.18 10.04 36.01 0.36 -0.82 16 8 C -0.21 -4.42 5.68 -105.06 -0.60 -5.02 16 9 C 0.21 4.76 5.23 -5.19 -0.03 4.73 16 10 N -0.54 -12.83 2.78 -167.02 -0.46 -13.30 16 11 C -0.25 -6.44 8.12 -15.06 -0.12 -6.56 16 12 H 0.06 1.54 7.17 -52.49 -0.38 1.16 16 13 C 0.02 0.51 4.69 -17.43 -0.08 0.43 16 14 N -0.89 -23.79 11.30 55.49 0.63 -23.16 16 15 Si 0.88 20.72 28.99 -169.99 -4.93 15.79 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.28 -6.35 6.62 56.52 0.37 -5.98 16 19 C 0.13 2.75 5.83 -67.93 -0.40 2.36 16 20 C -0.20 -3.93 9.80 -26.73 -0.26 -4.19 16 21 C -0.23 -4.41 10.10 -26.73 -0.27 -4.68 16 22 H 0.08 1.70 7.01 -51.93 -0.36 1.33 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.08 1.84 7.03 -51.93 -0.36 1.48 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.09 1.29 5.84 -51.93 -0.30 0.99 16 28 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 29 H 0.11 2.76 4.48 -51.92 -0.23 2.53 16 30 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 31 H 0.09 1.61 7.07 -51.92 -0.37 1.24 16 32 H 0.10 2.17 6.90 -51.93 -0.36 1.81 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.08 1.75 8.06 -51.93 -0.42 1.34 16 LS Contribution 287.25 15.07 4.33 4.33 Total: -1.00 -28.71 287.25 -8.07 -36.79 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.10 Total: 6.59 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -2.22 Total: -12.67 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.84 Total: -50.82 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.93 Total: 15.79 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.71 -8.07 -36.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271128358.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.434 kcal (2) G-P(sol) polarization free energy of solvation -28.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds