Wall clock time and date at job start Sun Mar 29 2020 21:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30838 * 125.89685 * 2 1 4 4 N 1.40086 * 108.20621 * 180.26112 * 3 2 1 5 5 H 0.96998 * 126.03828 * 179.70132 * 4 3 2 6 6 C 1.34949 * 107.92117 * 359.72125 * 4 3 2 7 7 C 1.50703 * 126.12668 * 180.02562 * 6 4 3 8 8 C 1.35317 * 107.74737 * 359.97438 * 6 4 3 9 9 C 1.50697 * 126.03826 * 179.97438 * 8 6 4 10 10 N 1.46500 * 109.47180 * 90.00358 * 9 8 6 11 11 C 1.36931 * 120.00035 * 89.99686 * 10 9 8 12 12 H 1.08000 * 120.00396 * 216.54317 * 11 10 9 13 13 C 1.38812 * 120.00252 * 36.54608 * 11 10 9 14 14 N 1.31621 * 119.99830 * 19.91066 * 13 11 10 15 15 Si 1.86799 * 120.00359 * 199.91327 * 13 11 10 16 16 H 1.48502 * 109.47198 * 180.02562 * 15 13 11 17 17 H 1.48500 * 109.46827 * 299.99492 * 15 13 11 18 18 H 1.48499 * 109.47274 * 59.99453 * 15 13 11 19 19 C 1.46494 * 119.99990 * 269.99949 * 10 9 8 20 20 C 1.52996 * 117.50108 * 193.32956 * 19 10 9 21 21 C 1.53002 * 60.00155 * 252.50641 * 20 19 10 22 22 H 1.09004 * 109.46860 * 270.20736 * 1 2 3 23 23 H 1.09003 * 109.47392 * 30.20288 * 1 2 3 24 24 H 1.08993 * 109.47237 * 150.21109 * 1 2 3 25 25 H 1.08998 * 109.47106 * 269.97602 * 7 6 4 26 26 H 1.09005 * 109.46866 * 29.97976 * 7 6 4 27 27 H 1.09004 * 109.47138 * 149.97379 * 7 6 4 28 28 H 1.09004 * 109.47472 * 330.00175 * 9 8 6 29 29 H 1.09009 * 109.47221 * 210.00500 * 9 8 6 30 30 H 0.97001 * 119.99898 * 180.76708 * 14 13 11 31 31 H 1.09007 * 115.55095 * 339.03434 * 19 10 9 32 32 H 1.09003 * 117.49923 * 359.97438 * 20 19 10 33 33 H 1.09003 * 117.50057 * 145.01654 * 20 19 10 34 34 H 1.08992 * 117.50000 * 252.50780 * 21 20 19 35 35 H 1.08997 * 117.51251 * 107.47369 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0061 5 1 4.3908 1.2081 -0.0115 6 6 3.6142 -0.7153 -0.0034 7 6 4.8350 -1.5989 -0.0075 8 6 2.3271 -1.1329 0.0046 9 6 1.8600 -2.5657 0.0095 10 7 1.7164 -3.0278 1.3923 11 6 0.5220 -2.8761 2.0444 12 1 0.5081 -2.6386 3.0978 13 6 -0.6713 -3.0276 1.3515 14 7 -0.6908 -3.6828 0.2101 15 14 -2.2492 -2.3017 2.0388 16 1 -3.3743 -2.6005 1.1168 17 1 -2.5293 -2.8973 3.3700 18 1 -2.0986 -0.8308 2.1764 19 6 2.8508 -3.6522 2.0774 20 6 2.5661 -4.3899 3.3871 21 6 3.2933 -3.0440 3.4098 22 1 -0.3633 0.0037 1.0277 23 1 -0.3634 0.8882 -0.5170 24 1 -0.3633 -0.8918 -0.5105 25 1 5.1242 -1.8143 -1.0361 26 1 5.6537 -1.0897 0.5012 27 1 4.6101 -2.5317 0.5097 28 1 2.5905 -3.1879 -0.5076 29 1 0.8982 -2.6360 -0.4988 30 1 -1.5226 -3.7791 -0.2796 31 1 3.6258 -4.0596 1.4281 32 1 1.5348 -4.4104 3.7393 33 1 3.1537 -5.2831 3.5997 34 1 4.3592 -3.0516 3.6372 35 1 2.7405 -2.1791 3.7764 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271128358.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:08 Heat of formation + Delta-G solvation = 97.640987 kcal Electronic energy + Delta-G solvation = -17413.175080 eV Core-core repulsion = 14834.529472 eV Total energy + Delta-G solvation = -2578.645608 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.04310 -38.61135 -35.44527 -34.08568 -33.30768 -31.52171 -29.07601 -28.09501 -26.78902 -24.77629 -22.88969 -21.65172 -20.90342 -20.15546 -18.29253 -17.84391 -16.99631 -16.32158 -15.76824 -15.71872 -14.72513 -14.53764 -14.15460 -14.07206 -13.98243 -13.50322 -13.33666 -13.16997 -12.78366 -12.70846 -12.46105 -12.43789 -12.14458 -11.99174 -11.74099 -11.48668 -11.12293 -10.85761 -10.30315 -9.97554 -9.06549 -8.35974 -7.69700 -5.31424 1.07477 1.45866 1.50174 1.54843 1.96226 2.17665 2.56073 3.26115 3.56533 3.76190 3.93800 4.02872 4.33273 4.38858 4.53069 4.55844 4.63698 4.78076 4.80578 4.85292 4.90958 4.99321 5.08999 5.17573 5.24352 5.37788 5.44629 5.49497 5.60293 5.76141 5.88736 5.99985 6.57410 6.67428 6.95624 7.28455 7.98806 8.48272 9.22736 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.019758 B = 0.012903 C = 0.009080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.817326 B = 2169.578277 C = 3082.900379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.078 3.922 3 N -0.339 5.339 4 N -0.474 5.474 5 H 0.445 0.555 6 C 0.087 3.913 7 C -0.084 4.084 8 C -0.246 4.246 9 C 0.219 3.781 10 N -0.555 5.555 11 C -0.248 4.248 12 H 0.038 0.962 13 C -0.009 4.009 14 N -0.907 5.907 15 Si 0.922 3.078 16 H -0.288 1.288 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.115 3.885 20 C -0.199 4.199 21 C -0.209 4.209 22 H 0.059 0.941 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.079 0.921 30 H 0.252 0.748 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.374 3.338 -1.129 10.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.088 4.088 3 N -0.164 5.164 4 N -0.185 5.185 5 H 0.291 0.709 6 C -0.042 4.042 7 C -0.143 4.143 8 C -0.259 4.259 9 C 0.092 3.908 10 N -0.271 5.271 11 C -0.379 4.379 12 H 0.056 0.944 13 C -0.207 4.207 14 N -0.551 5.551 15 Si 0.751 3.249 16 H -0.214 1.214 17 H -0.214 1.214 18 H -0.199 1.199 19 C 0.007 3.993 20 C -0.238 4.238 21 C -0.249 4.249 22 H 0.077 0.923 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.112 0.888 26 H 0.109 0.891 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.129 0.871 32 H 0.085 0.915 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.210 4.529 -1.277 11.242 hybrid contribution -0.959 -0.094 0.634 1.153 sum 9.252 4.435 -0.642 10.280 Atomic orbital electron populations 1.20064 0.87592 1.02292 1.02000 1.22266 0.96991 0.91053 0.98457 1.77034 0.87879 1.22756 1.28728 1.46009 1.06604 1.05077 1.60843 0.70899 1.21298 0.97517 0.84870 1.00505 1.20545 0.91586 0.97954 1.04180 1.20983 0.91804 0.98640 1.14489 1.19158 1.00373 0.85818 0.85402 1.43499 1.07233 1.64864 1.11501 1.18779 0.84044 1.41163 0.93892 0.94388 1.25345 0.98910 0.98461 0.97965 1.70027 1.26451 1.41204 1.17427 0.86110 0.81414 0.79587 0.77761 1.21361 1.21363 1.19863 1.21371 0.92676 0.98085 0.87217 1.23071 1.00357 0.95395 1.04942 1.23240 0.99407 0.95462 1.06822 0.92278 0.90794 0.91263 0.88806 0.89095 0.90089 0.94282 0.90302 0.93803 0.87086 0.91469 0.87904 0.87737 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.56 10.17 71.24 0.72 -1.84 16 2 C 0.08 3.33 7.22 43.10 0.31 3.64 16 3 N -0.34 -13.45 12.70 -47.39 -0.60 -14.06 16 4 N -0.47 -15.04 7.36 -48.00 -0.35 -15.39 16 5 H 0.45 10.20 8.96 -213.33 -1.91 8.29 16 6 C 0.09 2.89 7.21 41.41 0.30 3.19 16 7 C -0.08 -1.95 10.04 71.24 0.71 -1.23 16 8 C -0.25 -10.19 5.68 -20.15 -0.11 -10.31 16 9 C 0.22 9.90 5.23 85.63 0.45 10.35 16 10 N -0.55 -26.31 2.78 -682.34 -1.89 -28.21 16 11 C -0.25 -13.15 8.12 84.03 0.68 -12.47 16 12 H 0.04 2.13 7.17 -2.91 -0.02 2.11 16 13 C -0.01 -0.47 4.69 84.86 0.40 -0.07 16 14 N -0.91 -49.89 11.30 21.65 0.24 -49.65 16 15 Si 0.92 43.45 28.99 68.60 1.99 45.44 16 16 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 17 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 18 H -0.27 -12.53 6.62 99.48 0.66 -11.87 16 19 C 0.12 4.58 5.83 44.99 0.26 4.84 16 20 C -0.20 -7.60 9.80 30.59 0.30 -7.30 16 21 C -0.21 -7.58 10.10 30.60 0.31 -7.27 16 22 H 0.06 2.66 7.01 -2.39 -0.02 2.64 16 23 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 24 H 0.07 3.10 7.03 -2.39 -0.02 3.09 16 25 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 27 H 0.08 2.05 5.84 -2.38 -0.01 2.04 16 28 H 0.04 1.63 7.67 -2.38 -0.02 1.61 16 29 H 0.08 4.09 4.48 -2.38 -0.01 4.08 16 30 H 0.25 13.56 8.31 -92.71 -0.77 12.78 16 31 H 0.11 3.82 7.07 -2.38 -0.02 3.81 16 32 H 0.07 2.99 6.90 -2.39 -0.02 2.98 16 33 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 35 H 0.05 2.28 8.06 -2.39 -0.02 2.26 16 Total: -1.00 -62.70 287.25 2.86 -59.84 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -0.86 Total: 20.50 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: 4.33 Total: -18.47 kcal Atomic # 7 Polarization: -104.70 SS G_CDS: -2.60 Total: -107.31 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.99 Total: 45.44 kcal Total: -62.70 2.86 -59.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271128358.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.476 kcal (2) G-P(sol) polarization free energy of solvation -62.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds