Wall clock time and date at job start Sun Mar 29 2020 22:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46506 * 109.47028 * 2 1 4 4 N 1.40095 * 126.03578 * 275.36488 * 3 2 1 5 5 C 1.30830 * 108.20089 * 180.22904 * 4 3 2 6 6 C 1.39874 * 108.20947 * 359.78018 * 5 4 3 7 7 C 1.34946 * 126.04177 * 95.20525 * 3 2 1 8 8 C 1.50702 * 126.12318 * 0.04190 * 7 3 2 9 9 N 1.46509 * 109.47127 * 85.13570 * 8 7 3 10 10 C 1.36936 * 119.99925 * 94.51946 * 9 8 7 11 11 H 1.07991 * 119.99781 * 218.04165 * 10 9 8 12 12 C 1.38813 * 119.99717 * 37.76117 * 10 9 8 13 13 N 1.31617 * 120.00159 * 20.04653 * 12 10 9 14 14 Si 1.86795 * 119.99834 * 200.04322 * 12 10 9 15 15 H 1.48499 * 109.47314 * 90.00343 * 14 12 10 16 16 H 1.48498 * 109.47374 * 210.00344 * 14 12 10 17 17 H 1.48502 * 109.47438 * 330.00285 * 14 12 10 18 18 C 1.46498 * 119.99665 * 274.52087 * 9 8 7 19 19 C 1.53009 * 117.49492 * 184.02277 * 18 9 8 20 20 C 1.52998 * 117.49704 * 115.36761 * 18 9 8 21 21 H 1.08995 * 109.47009 * 304.89208 * 1 2 3 22 22 H 1.09002 * 109.47269 * 64.89830 * 1 2 3 23 23 H 1.09000 * 109.46508 * 184.89354 * 1 2 3 24 24 H 1.08998 * 109.47156 * 240.00540 * 2 1 3 25 25 H 1.08998 * 109.47502 * 119.99937 * 2 1 3 26 26 H 1.08003 * 125.89451 * 179.74756 * 5 4 3 27 27 H 1.07990 * 126.04085 * 179.97438 * 6 5 4 28 28 H 1.09002 * 109.47254 * 325.13692 * 8 7 3 29 29 H 1.08993 * 109.47176 * 205.13657 * 8 7 3 30 30 H 0.96996 * 120.00113 * 184.98343 * 13 12 10 31 31 H 1.09002 * 115.55442 * 329.68936 * 18 9 8 32 32 H 1.08995 * 117.49623 * 0.02562 * 19 18 9 33 33 H 1.09000 * 117.49804 * 145.02238 * 19 18 9 34 34 H 1.09005 * 117.49747 * 214.97807 * 20 18 9 35 35 H 1.08996 * 117.50159 * 359.96822 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.1932 2.1936 -1.1279 5 6 2.6483 3.3537 -0.7294 6 6 2.7730 3.3193 0.6633 7 6 2.3763 2.0969 1.0867 8 6 2.3460 1.6180 2.5153 9 7 3.5885 0.9027 2.8170 10 6 4.6374 1.5663 3.3954 11 1 5.6502 1.3400 3.0966 12 6 4.3985 2.5340 4.3615 13 7 3.2511 2.5512 5.0061 14 14 5.7055 3.8118 4.7468 15 1 5.5146 4.9951 3.8702 16 1 5.5897 4.2252 6.1684 17 1 7.0512 3.2309 4.5083 18 6 3.7087 -0.5225 2.4999 19 6 4.9947 -1.2346 2.9245 20 6 4.7418 -0.9271 1.4465 21 1 -0.3633 0.5878 0.8429 22 1 -0.3634 0.4360 -0.9306 23 1 -0.3632 -1.0240 0.0877 24 1 1.8934 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 2.8871 4.1928 -1.3661 27 1 3.1242 4.1257 1.2899 28 1 1.4978 0.9481 2.6560 29 1 2.2480 2.4737 3.1832 30 1 3.0552 3.2689 5.6285 31 1 2.7807 -1.0930 2.5400 32 1 5.7509 -0.6428 3.4401 33 1 4.9127 -2.2737 3.2435 34 1 4.4936 -1.7640 0.7936 35 1 5.3317 -0.1329 0.9889 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271131093.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:21 Heat of formation + Delta-G solvation = 122.633514 kcal Electronic energy + Delta-G solvation = -17257.636066 eV Core-core repulsion = 14680.074215 eV Total energy + Delta-G solvation = -2577.561851 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.42739 -37.10716 -33.95693 -33.72857 -31.27538 -29.28527 -28.69669 -25.66244 -23.77745 -23.08394 -21.47114 -20.38393 -20.02285 -18.86505 -16.75586 -15.81572 -15.38657 -14.70106 -14.57301 -14.15982 -13.80617 -13.46914 -13.04077 -12.66724 -12.25617 -12.05162 -11.79490 -11.77054 -11.29148 -10.97948 -10.85079 -10.76243 -10.63515 -10.52923 -10.10442 -9.84502 -9.67010 -9.42140 -8.54858 -8.48690 -7.69328 -6.72806 -5.91811 -3.54130 2.65959 3.20686 3.33066 3.40466 3.41920 3.62813 4.38764 4.80365 5.00210 5.16773 5.24834 5.31119 5.42995 5.59834 5.66129 5.75844 5.82018 5.92741 6.03845 6.13136 6.19251 6.23794 6.37493 6.48355 6.53131 6.63652 6.87397 7.04680 7.08011 7.33564 7.43474 7.70891 7.85645 8.35454 8.49431 9.00735 9.62533 10.18047 11.07074 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.022160 B = 0.010435 C = 0.008513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.250719 B = 2682.758383 C = 3288.228411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.129 3.871 3 N -0.368 5.368 4 N -0.326 5.326 5 C 0.036 3.964 6 C -0.277 4.277 7 C 0.102 3.898 8 C 0.203 3.797 9 N -0.540 5.540 10 C -0.257 4.257 11 H 0.063 0.937 12 C 0.018 3.982 13 N -0.885 5.885 14 Si 0.899 3.101 15 H -0.283 1.283 16 H -0.290 1.290 17 H -0.277 1.277 18 C 0.120 3.880 19 C -0.185 4.185 20 C -0.226 4.226 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.170 0.830 27 H 0.137 0.863 28 H 0.037 0.963 29 H 0.121 0.879 30 H 0.258 0.742 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.459 -3.693 -6.197 8.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.007 3.993 3 N -0.151 5.151 4 N -0.148 5.148 5 C -0.149 4.149 6 C -0.307 4.307 7 C -0.028 4.028 8 C 0.074 3.926 9 N -0.256 5.256 10 C -0.386 4.386 11 H 0.081 0.919 12 C -0.182 4.182 13 N -0.526 5.526 14 Si 0.727 3.273 15 H -0.209 1.209 16 H -0.216 1.216 17 H -0.202 1.202 18 C 0.011 3.989 19 C -0.223 4.223 20 C -0.267 4.267 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.100 0.900 25 H 0.114 0.886 26 H 0.187 0.813 27 H 0.155 0.845 28 H 0.056 0.944 29 H 0.139 0.861 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.909 -4.457 -6.962 9.144 hybrid contribution 1.051 1.238 0.729 1.780 sum -2.858 -3.219 -6.233 7.575 Atomic orbital electron populations 1.22178 0.95184 1.02330 1.02885 1.21588 0.94417 0.79191 1.04072 1.48495 1.51388 1.11232 1.04018 1.77100 1.24937 1.03373 1.09357 1.23623 0.99988 0.95912 0.95373 1.21156 1.15778 0.99325 0.94391 1.22876 0.95514 0.91646 0.92751 1.19732 0.87686 0.99213 0.85922 1.43254 1.13799 1.01506 1.67025 1.18941 0.87348 1.18207 1.14120 0.91905 1.25153 0.97263 1.01316 0.94490 1.70020 1.24453 1.31832 1.26317 0.86360 0.81651 0.82050 0.77209 1.20908 1.21603 1.20181 1.21155 0.91324 0.86655 0.99718 1.23045 1.02641 0.99562 0.97074 1.23425 1.08592 1.02669 0.92007 0.91960 0.92133 0.91170 0.90025 0.88561 0.81306 0.84499 0.94425 0.86140 0.93246 0.89827 0.88092 0.90476 0.90922 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 10.24 37.16 0.38 -1.80 16 2 C 0.13 2.00 6.92 -4.04 -0.03 1.98 16 3 N -0.37 -7.08 3.61 -57.14 -0.21 -7.29 16 4 N -0.33 -6.46 12.58 30.62 0.39 -6.07 16 5 C 0.04 0.68 12.02 -17.37 -0.21 0.48 16 6 C -0.28 -5.77 10.72 -40.01 -0.43 -6.20 16 7 C 0.10 2.15 6.51 -82.26 -0.54 1.62 16 8 C 0.20 4.54 5.21 -5.19 -0.03 4.51 16 9 N -0.54 -12.69 2.75 -167.02 -0.46 -13.15 16 10 C -0.26 -6.66 8.35 -15.06 -0.13 -6.78 16 11 H 0.06 1.67 6.98 -52.49 -0.37 1.31 16 12 C 0.02 0.48 4.94 -17.43 -0.09 0.40 16 13 N -0.88 -23.93 11.46 55.49 0.64 -23.29 16 14 Si 0.90 20.88 29.60 -169.99 -5.03 15.84 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 C 0.12 2.44 5.17 -67.93 -0.35 2.09 16 19 C -0.18 -3.54 9.78 -26.69 -0.26 -3.80 16 20 C -0.23 -4.23 10.35 -26.69 -0.28 -4.50 16 21 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 25 H 0.10 1.50 4.86 -51.93 -0.25 1.25 16 26 H 0.17 2.54 8.06 -52.48 -0.42 2.12 16 27 H 0.14 2.86 8.06 -52.49 -0.42 2.44 16 28 H 0.04 0.79 7.80 -51.93 -0.41 0.38 16 29 H 0.12 3.03 5.54 -51.93 -0.29 2.74 16 30 H 0.26 6.73 8.32 -40.82 -0.34 6.39 16 31 H 0.08 1.54 7.16 -51.93 -0.37 1.17 16 32 H 0.10 2.14 6.60 -51.93 -0.34 1.80 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 LS Contribution 291.90 15.07 4.40 4.40 Total: -1.00 -28.52 291.90 -7.19 -35.72 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -4.97 Total: 5.87 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -1.95 Total: -12.03 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 0.36 Total: -49.80 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.52 -7.19 -35.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271131093.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.349 kcal (2) G-P(sol) polarization free energy of solvation -28.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds