Wall clock time and date at job start Sun Mar 29 2020 22:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46506 * 109.47028 * 2 1 4 4 N 1.40095 * 126.03578 * 275.36488 * 3 2 1 5 5 C 1.30830 * 108.20089 * 180.22904 * 4 3 2 6 6 C 1.39874 * 108.20947 * 359.78018 * 5 4 3 7 7 C 1.34946 * 126.04177 * 95.20525 * 3 2 1 8 8 C 1.50702 * 126.12318 * 0.04190 * 7 3 2 9 9 N 1.46509 * 109.47127 * 85.13570 * 8 7 3 10 10 C 1.36936 * 119.99925 * 94.51946 * 9 8 7 11 11 H 1.07991 * 119.99781 * 218.04165 * 10 9 8 12 12 C 1.38813 * 119.99717 * 37.76117 * 10 9 8 13 13 N 1.31617 * 120.00159 * 20.04653 * 12 10 9 14 14 Si 1.86795 * 119.99834 * 200.04322 * 12 10 9 15 15 H 1.48499 * 109.47314 * 90.00343 * 14 12 10 16 16 H 1.48498 * 109.47374 * 210.00344 * 14 12 10 17 17 H 1.48502 * 109.47438 * 330.00285 * 14 12 10 18 18 C 1.46498 * 119.99665 * 274.52087 * 9 8 7 19 19 C 1.53009 * 117.49492 * 184.02277 * 18 9 8 20 20 C 1.52998 * 117.49704 * 115.36761 * 18 9 8 21 21 H 1.08995 * 109.47009 * 304.89208 * 1 2 3 22 22 H 1.09002 * 109.47269 * 64.89830 * 1 2 3 23 23 H 1.09000 * 109.46508 * 184.89354 * 1 2 3 24 24 H 1.08998 * 109.47156 * 240.00540 * 2 1 3 25 25 H 1.08998 * 109.47502 * 119.99937 * 2 1 3 26 26 H 1.08003 * 125.89451 * 179.74756 * 5 4 3 27 27 H 1.07990 * 126.04085 * 179.97438 * 6 5 4 28 28 H 1.09002 * 109.47254 * 325.13692 * 8 7 3 29 29 H 1.08993 * 109.47176 * 205.13657 * 8 7 3 30 30 H 0.96996 * 120.00113 * 184.98343 * 13 12 10 31 31 H 1.09002 * 115.55442 * 329.68936 * 18 9 8 32 32 H 1.08995 * 117.49623 * 0.02562 * 19 18 9 33 33 H 1.09000 * 117.49804 * 145.02238 * 19 18 9 34 34 H 1.09005 * 117.49747 * 214.97807 * 20 18 9 35 35 H 1.08996 * 117.50159 * 359.96822 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.1932 2.1936 -1.1279 5 6 2.6483 3.3537 -0.7294 6 6 2.7730 3.3193 0.6633 7 6 2.3763 2.0969 1.0867 8 6 2.3460 1.6180 2.5153 9 7 3.5885 0.9027 2.8170 10 6 4.6374 1.5663 3.3954 11 1 5.6502 1.3400 3.0966 12 6 4.3985 2.5340 4.3615 13 7 3.2511 2.5512 5.0061 14 14 5.7055 3.8118 4.7468 15 1 5.5146 4.9951 3.8702 16 1 5.5897 4.2252 6.1684 17 1 7.0512 3.2309 4.5083 18 6 3.7087 -0.5225 2.4999 19 6 4.9947 -1.2346 2.9245 20 6 4.7418 -0.9271 1.4465 21 1 -0.3633 0.5878 0.8429 22 1 -0.3634 0.4360 -0.9306 23 1 -0.3632 -1.0240 0.0877 24 1 1.8934 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 2.8871 4.1928 -1.3661 27 1 3.1242 4.1257 1.2899 28 1 1.4978 0.9481 2.6560 29 1 2.2480 2.4737 3.1832 30 1 3.0552 3.2689 5.6285 31 1 2.7807 -1.0930 2.5400 32 1 5.7509 -0.6428 3.4401 33 1 4.9127 -2.2737 3.2435 34 1 4.4936 -1.7640 0.7936 35 1 5.3317 -0.1329 0.9889 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271131093.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:21 Heat of formation + Delta-G solvation = 107.108742 kcal Electronic energy + Delta-G solvation = -17258.309271 eV Core-core repulsion = 14680.074215 eV Total energy + Delta-G solvation = -2578.235055 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.95734 -38.76577 -35.49208 -35.24638 -33.10143 -30.92834 -30.09116 -27.49986 -25.43246 -24.44761 -22.99400 -21.99700 -21.59823 -20.42448 -18.49521 -17.51791 -17.08240 -16.35083 -16.01062 -15.79229 -15.30147 -14.88943 -14.71048 -14.11445 -13.91760 -13.46384 -13.35055 -13.12522 -12.92582 -12.72379 -12.51439 -12.36818 -12.18856 -12.14163 -11.93416 -11.41239 -11.36982 -10.99085 -10.43902 -10.01548 -9.27787 -8.60723 -7.86582 -5.52987 1.09977 1.45375 1.49239 1.55214 1.80855 2.05577 2.48744 3.13765 3.36471 3.52694 3.73631 4.09319 4.17577 4.19594 4.24870 4.35292 4.42219 4.50515 4.54542 4.77292 4.82651 4.89925 4.96339 5.02692 5.06284 5.20304 5.29245 5.40966 5.49182 5.57827 5.65821 5.93218 6.30022 6.44977 6.95350 7.08539 7.74939 8.26185 9.07494 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.022160 B = 0.010435 C = 0.008513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.250719 B = 2682.758383 C = 3288.228411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 N -0.365 5.365 4 N -0.335 5.335 5 C 0.041 3.959 6 C -0.299 4.299 7 C 0.091 3.909 8 C 0.212 3.788 9 N -0.554 5.554 10 C -0.259 4.259 11 H 0.049 0.951 12 C -0.021 4.021 13 N -0.909 5.909 14 Si 0.948 3.052 15 H -0.283 1.283 16 H -0.291 1.291 17 H -0.275 1.275 18 C 0.101 3.899 19 C -0.183 4.183 20 C -0.206 4.206 21 H 0.048 0.952 22 H 0.057 0.943 23 H 0.103 0.897 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.205 0.795 27 H 0.127 0.873 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.255 0.745 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.747 -4.951 -7.396 9.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.001 4.001 3 N -0.148 5.148 4 N -0.157 5.157 5 C -0.144 4.144 6 C -0.329 4.329 7 C -0.040 4.040 8 C 0.084 3.916 9 N -0.271 5.271 10 C -0.389 4.389 11 H 0.067 0.933 12 C -0.219 4.219 13 N -0.552 5.552 14 Si 0.776 3.224 15 H -0.210 1.210 16 H -0.217 1.217 17 H -0.200 1.200 18 C -0.007 4.007 19 C -0.221 4.221 20 C -0.246 4.246 21 H 0.067 0.933 22 H 0.076 0.924 23 H 0.122 0.878 24 H 0.114 0.886 25 H 0.115 0.885 26 H 0.221 0.779 27 H 0.145 0.855 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.125 0.875 32 H 0.092 0.908 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.197 -5.745 -8.181 10.842 hybrid contribution 1.135 1.569 1.049 2.203 sum -3.062 -4.176 -7.132 8.813 Atomic orbital electron populations 1.22121 0.93182 1.04219 1.02126 1.21930 0.96076 0.77401 1.04738 1.48763 1.50728 1.12212 1.03134 1.77066 1.25174 1.03793 1.09661 1.24103 0.98932 0.96617 0.94764 1.21295 1.16648 0.99350 0.95641 1.22628 0.96437 0.92259 0.92711 1.19443 0.87744 0.98252 0.86184 1.43359 1.13389 1.03044 1.67349 1.18954 0.87563 1.18599 1.13746 0.93327 1.25672 0.98719 1.02774 0.94757 1.70101 1.25731 1.32279 1.27059 0.85583 0.79909 0.80176 0.76712 1.20968 1.21687 1.20023 1.21428 0.92846 0.85312 1.01070 1.23067 1.01054 1.00704 0.97276 1.23310 1.06736 1.02589 0.91998 0.93259 0.92409 0.87820 0.88603 0.88535 0.77857 0.85522 0.93385 0.89133 0.93528 0.87470 0.90810 0.87295 0.87545 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 10.24 71.98 0.74 -2.98 16 2 C 0.12 3.40 6.92 86.38 0.60 4.00 16 3 N -0.36 -13.54 3.61 -334.69 -1.21 -14.75 16 4 N -0.34 -12.70 12.58 -57.02 -0.72 -13.42 16 5 C 0.04 1.48 12.02 85.24 1.02 2.50 16 6 C -0.30 -12.50 10.72 21.99 0.24 -12.26 16 7 C 0.09 3.80 6.51 41.41 0.27 4.07 16 8 C 0.21 9.55 5.21 85.63 0.45 9.99 16 9 N -0.55 -26.05 2.75 -682.32 -1.87 -27.93 16 10 C -0.26 -13.60 8.35 84.03 0.70 -12.89 16 11 H 0.05 2.66 6.98 -2.92 -0.02 2.64 16 12 C -0.02 -1.11 4.94 84.86 0.42 -0.69 16 13 N -0.91 -50.09 11.46 21.65 0.25 -49.84 16 14 Si 0.95 43.57 29.60 68.60 2.03 45.60 16 15 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 16 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 18 C 0.10 3.94 5.17 44.99 0.23 4.17 16 19 C -0.18 -6.70 9.78 30.62 0.30 -6.40 16 20 C -0.21 -7.27 10.35 30.62 0.32 -6.95 16 21 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 25 H 0.10 2.75 4.86 -2.39 -0.01 2.74 16 26 H 0.20 5.64 8.06 -2.91 -0.02 5.62 16 27 H 0.13 5.44 8.06 -2.92 -0.02 5.41 16 28 H 0.05 2.00 7.80 -2.39 -0.02 1.98 16 29 H 0.09 4.68 5.54 -2.39 -0.01 4.67 16 30 H 0.26 13.63 8.32 -92.71 -0.77 12.86 16 31 H 0.11 3.65 7.16 -2.39 -0.02 3.64 16 32 H 0.07 3.12 6.60 -2.39 -0.02 3.10 16 33 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.11 3.04 8.14 -2.38 -0.02 3.03 16 35 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -61.14 291.90 4.83 -56.31 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 1.07 Total: 21.46 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: 5.28 Total: -17.44 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -3.55 Total: -105.94 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -61.14 4.83 -56.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271131093.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.415 kcal (2) G-P(sol) polarization free energy of solvation -61.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds