Wall clock time and date at job start Sun Mar 29 2020 22:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46490 * 109.47320 * 2 1 4 4 C 1.34949 * 126.03855 * 124.99843 * 3 2 1 5 5 C 1.35318 * 107.74756 * 180.02562 * 4 3 2 6 6 C 1.50695 * 126.04031 * 180.02562 * 5 4 3 7 7 N 1.46505 * 109.47360 * 89.99719 * 6 5 4 8 8 C 1.36936 * 119.99803 * 90.00281 * 7 6 5 9 9 H 1.08000 * 119.99656 * 214.95614 * 8 7 6 10 10 C 1.38811 * 120.00261 * 34.94856 * 8 7 6 11 11 N 1.31615 * 119.99930 * 21.91166 * 10 8 7 12 12 Si 1.86798 * 119.99958 * 201.90715 * 10 8 7 13 13 H 1.48500 * 109.46835 * 180.02562 * 12 10 8 14 14 H 1.48496 * 109.47280 * 300.00080 * 12 10 8 15 15 H 1.48496 * 109.47332 * 60.00368 * 12 10 8 16 16 C 1.46494 * 120.00146 * 270.00167 * 7 6 5 17 17 C 1.53004 * 117.50070 * 191.94174 * 16 7 6 18 18 C 1.52995 * 117.50069 * 123.28062 * 16 7 6 19 19 C 1.39868 * 107.91912 * 0.25766 * 5 4 3 20 20 N 1.30839 * 108.20167 * 359.56188 * 19 5 4 21 21 H 1.09006 * 109.46831 * 59.99843 * 1 2 3 22 22 H 1.08994 * 109.47538 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47216 * 300.00657 * 1 2 3 24 24 H 1.09005 * 109.46876 * 239.99255 * 2 1 3 25 25 H 1.09006 * 109.46831 * 120.00157 * 2 1 3 26 26 H 1.07997 * 126.12723 * 0.02562 * 4 3 2 27 27 H 1.09002 * 109.47135 * 330.00009 * 6 5 4 28 28 H 1.09001 * 109.47201 * 209.99856 * 6 5 4 29 29 H 0.96998 * 120.00425 * 179.97438 * 11 10 8 30 30 H 1.09003 * 115.55265 * 337.61127 * 16 7 6 31 31 H 1.08997 * 117.49630 * 359.97438 * 17 16 7 32 32 H 1.09000 * 117.49652 * 145.02158 * 17 16 7 33 33 H 1.09003 * 117.50087 * 214.97992 * 18 16 7 34 34 H 1.09002 * 117.49889 * 359.97438 * 18 16 7 35 35 H 1.08005 * 125.89894 * 179.73311 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.8731 1.9210 0.8939 5 6 3.0713 3.2137 0.5463 6 6 3.9549 4.1998 1.2659 7 7 5.3076 4.1426 0.7062 8 6 5.6487 4.9523 -0.3441 9 1 6.3319 4.5960 -1.1008 10 6 5.1162 6.2309 -0.4363 11 7 4.6531 6.8301 0.6402 12 14 5.0571 7.1012 -2.0881 13 1 4.4474 8.4445 -1.9182 14 1 6.4357 7.2475 -2.6202 15 1 4.2416 6.3036 -3.0389 16 6 6.2952 3.2193 1.2702 17 6 7.7533 3.3961 0.8414 18 6 6.9405 2.2084 0.3202 19 6 2.3071 3.4743 -0.5957 20 7 1.6801 2.3749 -0.9276 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8933 -0.5140 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.3191 1.4125 1.7358 27 1 3.9896 3.9500 2.3264 28 1 3.5528 5.2054 1.1425 29 1 4.2814 7.7237 0.5759 30 1 6.1074 2.8982 2.2947 31 1 7.9775 4.1992 0.1394 32 1 8.5245 3.1910 1.5838 33 1 7.1774 1.2223 0.7198 34 1 6.6298 2.2300 -0.7244 35 1 2.2472 4.4190 -1.1157 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271145776.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:24 Heat of formation + Delta-G solvation = 126.467040 kcal Electronic energy + Delta-G solvation = -16775.522672 eV Core-core repulsion = 14198.127055 eV Total energy + Delta-G solvation = -2577.395617 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.41984 -36.92052 -34.31113 -33.30193 -31.00866 -29.66979 -28.69698 -25.24993 -23.76803 -22.84321 -21.32326 -20.08070 -19.82494 -19.31658 -16.65896 -15.98350 -15.31429 -15.00734 -14.31569 -13.96432 -13.84461 -13.53224 -12.82949 -12.62007 -12.25064 -12.01407 -11.96139 -11.68309 -11.26390 -11.04198 -10.75972 -10.74888 -10.56943 -10.14558 -10.03370 -9.81050 -9.46107 -9.26263 -8.69980 -8.36953 -7.55692 -6.48798 -5.75900 -3.30623 2.58161 3.08461 3.39242 3.45459 3.48999 3.67128 4.50332 4.75169 4.99819 5.05774 5.22440 5.40384 5.42265 5.45158 5.62253 5.66154 5.90852 5.94300 6.10270 6.14049 6.27689 6.38798 6.46784 6.51622 6.65536 6.87039 7.01887 7.11973 7.20628 7.47341 7.64026 7.80890 7.85675 8.43038 8.55370 9.21237 9.84793 10.40149 11.22909 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.022252 B = 0.008832 C = 0.007113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.016790 B = 3169.616289 C = 3935.473938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.137 3.863 3 N -0.387 5.387 4 C 0.034 3.966 5 C -0.209 4.209 6 C 0.208 3.792 7 N -0.543 5.543 8 C -0.250 4.250 9 H 0.060 0.940 10 C 0.013 3.987 11 N -0.887 5.887 12 Si 0.893 3.107 13 H -0.290 1.290 14 H -0.282 1.282 15 H -0.281 1.281 16 C 0.132 3.868 17 C -0.197 4.197 18 C -0.228 4.228 19 C 0.066 3.934 20 N -0.316 5.316 21 H 0.068 0.932 22 H 0.067 0.933 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.159 0.841 27 H 0.030 0.970 28 H 0.109 0.891 29 H 0.256 0.744 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.420 -10.796 2.015 11.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.015 3.985 3 N -0.172 5.172 4 C -0.111 4.111 5 C -0.222 4.222 6 C 0.082 3.918 7 N -0.258 5.258 8 C -0.380 4.380 9 H 0.077 0.923 10 C -0.187 4.187 11 N -0.529 5.529 12 Si 0.723 3.277 13 H -0.215 1.215 14 H -0.208 1.208 15 H -0.207 1.207 16 C 0.022 3.978 17 C -0.236 4.236 18 C -0.269 4.269 19 C -0.120 4.120 20 N -0.138 5.138 21 H 0.087 0.913 22 H 0.086 0.914 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.105 0.895 26 H 0.176 0.824 27 H 0.049 0.951 28 H 0.127 0.873 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.361 -11.260 1.243 12.533 hybrid contribution 0.704 0.660 -0.425 1.054 sum -4.657 -10.601 0.818 11.607 Atomic orbital electron populations 1.22036 0.94540 1.02026 1.03436 1.21436 0.95414 0.78876 1.02797 1.48466 1.37117 1.09470 1.22149 1.22209 0.96904 0.95101 0.96853 1.21432 1.04411 0.95744 1.00651 1.19448 0.82572 0.98243 0.91576 1.43418 1.04807 1.41037 1.36550 1.18868 1.27042 0.92703 0.99341 0.92286 1.25035 1.01458 0.95579 0.96594 1.69945 1.43426 1.13195 1.26333 0.86513 0.78159 0.78574 0.84488 1.21536 1.20812 1.20746 1.21068 0.88648 0.94728 0.93382 1.23078 0.95534 1.00697 1.04308 1.23350 1.08969 0.93242 1.01388 1.23737 0.95223 0.96676 0.96338 1.77151 1.25402 0.97229 1.13979 0.91287 0.91437 0.92283 0.90769 0.89463 0.82366 0.95117 0.87349 0.93395 0.89663 0.88386 0.90888 0.91255 0.89972 0.80893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 10.10 37.16 0.38 -1.37 16 2 C 0.14 1.66 7.23 -4.05 -0.03 1.63 16 3 N -0.39 -6.65 3.68 -61.37 -0.23 -6.87 16 4 C 0.03 0.61 11.36 -17.22 -0.20 0.41 16 5 C -0.21 -4.37 5.68 -105.06 -0.60 -4.97 16 6 C 0.21 4.78 5.82 -5.19 -0.03 4.75 16 7 N -0.54 -13.23 2.78 -167.03 -0.46 -13.70 16 8 C -0.25 -6.67 8.20 -15.06 -0.12 -6.79 16 9 H 0.06 1.62 7.15 -52.49 -0.38 1.25 16 10 C 0.01 0.36 4.97 -17.43 -0.09 0.27 16 11 N -0.89 -24.64 11.31 55.49 0.63 -24.02 16 12 Si 0.89 21.37 29.61 -169.99 -5.03 16.34 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 16 C 0.13 2.81 6.60 -67.93 -0.45 2.36 16 17 C -0.20 -3.99 9.79 -26.69 -0.26 -4.25 16 18 C -0.23 -4.48 10.15 -26.70 -0.27 -4.75 16 19 C 0.07 1.41 11.96 -17.36 -0.21 1.21 16 20 N -0.32 -6.34 12.42 30.63 0.38 -5.96 16 21 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.09 0.83 8.07 -51.93 -0.42 0.41 16 26 H 0.16 2.36 8.06 -52.49 -0.42 1.94 16 27 H 0.03 0.66 8.04 -51.93 -0.42 0.24 16 28 H 0.11 2.80 5.34 -51.93 -0.28 2.52 16 29 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.09 1.66 8.11 -51.93 -0.42 1.24 16 31 H 0.10 2.20 6.81 -51.93 -0.35 1.84 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 35 H 0.17 3.68 8.06 -52.48 -0.42 3.26 16 LS Contribution 297.91 15.07 4.49 4.49 Total: -1.00 -29.67 297.91 -7.30 -36.97 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -5.20 Total: 4.26 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -1.88 Total: -11.51 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.32 Total: -50.54 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.67 -7.30 -36.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271145776.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.437 kcal (2) G-P(sol) polarization free energy of solvation -29.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds