Wall clock time and date at job start Sun Mar 29 2020 22:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46490 * 109.47320 * 2 1 4 4 C 1.34949 * 126.03855 * 124.99843 * 3 2 1 5 5 C 1.35318 * 107.74756 * 180.02562 * 4 3 2 6 6 C 1.50695 * 126.04031 * 180.02562 * 5 4 3 7 7 N 1.46505 * 109.47360 * 89.99719 * 6 5 4 8 8 C 1.36936 * 119.99803 * 90.00281 * 7 6 5 9 9 H 1.08000 * 119.99656 * 214.95614 * 8 7 6 10 10 C 1.38811 * 120.00261 * 34.94856 * 8 7 6 11 11 N 1.31615 * 119.99930 * 21.91166 * 10 8 7 12 12 Si 1.86798 * 119.99958 * 201.90715 * 10 8 7 13 13 H 1.48500 * 109.46835 * 180.02562 * 12 10 8 14 14 H 1.48496 * 109.47280 * 300.00080 * 12 10 8 15 15 H 1.48496 * 109.47332 * 60.00368 * 12 10 8 16 16 C 1.46494 * 120.00146 * 270.00167 * 7 6 5 17 17 C 1.53004 * 117.50070 * 191.94174 * 16 7 6 18 18 C 1.52995 * 117.50069 * 123.28062 * 16 7 6 19 19 C 1.39868 * 107.91912 * 0.25766 * 5 4 3 20 20 N 1.30839 * 108.20167 * 359.56188 * 19 5 4 21 21 H 1.09006 * 109.46831 * 59.99843 * 1 2 3 22 22 H 1.08994 * 109.47538 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47216 * 300.00657 * 1 2 3 24 24 H 1.09005 * 109.46876 * 239.99255 * 2 1 3 25 25 H 1.09006 * 109.46831 * 120.00157 * 2 1 3 26 26 H 1.07997 * 126.12723 * 0.02562 * 4 3 2 27 27 H 1.09002 * 109.47135 * 330.00009 * 6 5 4 28 28 H 1.09001 * 109.47201 * 209.99856 * 6 5 4 29 29 H 0.96998 * 120.00425 * 179.97438 * 11 10 8 30 30 H 1.09003 * 115.55265 * 337.61127 * 16 7 6 31 31 H 1.08997 * 117.49630 * 359.97438 * 17 16 7 32 32 H 1.09000 * 117.49652 * 145.02158 * 17 16 7 33 33 H 1.09003 * 117.50087 * 214.97992 * 18 16 7 34 34 H 1.09002 * 117.49889 * 359.97438 * 18 16 7 35 35 H 1.08005 * 125.89894 * 179.73311 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.8731 1.9210 0.8939 5 6 3.0713 3.2137 0.5463 6 6 3.9549 4.1998 1.2659 7 7 5.3076 4.1426 0.7062 8 6 5.6487 4.9523 -0.3441 9 1 6.3319 4.5960 -1.1008 10 6 5.1162 6.2309 -0.4363 11 7 4.6531 6.8301 0.6402 12 14 5.0571 7.1012 -2.0881 13 1 4.4474 8.4445 -1.9182 14 1 6.4357 7.2475 -2.6202 15 1 4.2416 6.3036 -3.0389 16 6 6.2952 3.2193 1.2702 17 6 7.7533 3.3961 0.8414 18 6 6.9405 2.2084 0.3202 19 6 2.3071 3.4743 -0.5957 20 7 1.6801 2.3749 -0.9276 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8933 -0.5140 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.3191 1.4125 1.7358 27 1 3.9896 3.9500 2.3264 28 1 3.5528 5.2054 1.1425 29 1 4.2814 7.7237 0.5759 30 1 6.1074 2.8982 2.2947 31 1 7.9775 4.1992 0.1394 32 1 8.5245 3.1910 1.5838 33 1 7.1774 1.2223 0.7198 34 1 6.6298 2.2300 -0.7244 35 1 2.2472 4.4190 -1.1157 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271145776.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:24 Heat of formation + Delta-G solvation = 109.869522 kcal Electronic energy + Delta-G solvation = -16776.242394 eV Core-core repulsion = 14198.127055 eV Total energy + Delta-G solvation = -2578.115339 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.88640 -38.63312 -35.67717 -34.90604 -32.84210 -31.07218 -30.24629 -27.06549 -25.24623 -24.26735 -22.91248 -21.69274 -21.31913 -20.87640 -18.33783 -17.59861 -17.04176 -16.30453 -16.06109 -15.66041 -15.26154 -14.89215 -14.46799 -14.05743 -13.78476 -13.46568 -13.20972 -13.01280 -12.88140 -12.65716 -12.59419 -12.24345 -12.15061 -11.99695 -11.83443 -11.51885 -11.12432 -10.88801 -10.34115 -10.13851 -9.06769 -8.42381 -7.75454 -5.34348 1.13039 1.44328 1.48393 1.54165 1.83952 2.05827 2.53499 3.20856 3.52843 3.72736 3.75663 4.13201 4.17296 4.28472 4.35968 4.43523 4.53792 4.58474 4.72619 4.75423 4.87426 4.97674 5.01858 5.10342 5.24331 5.27908 5.38153 5.47505 5.58137 5.72229 5.86339 5.92091 6.39183 6.54175 6.93491 7.22829 7.95344 8.43202 9.17590 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.022252 B = 0.008832 C = 0.007113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.016790 B = 3169.616289 C = 3935.473938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.123 3.877 3 N -0.376 5.376 4 C 0.056 3.944 5 C -0.238 4.238 6 C 0.215 3.785 7 N -0.559 5.559 8 C -0.249 4.249 9 H 0.044 0.956 10 C -0.027 4.027 11 N -0.911 5.911 12 Si 0.942 3.058 13 H -0.289 1.289 14 H -0.280 1.280 15 H -0.284 1.284 16 C 0.111 3.889 17 C -0.198 4.198 18 C -0.206 4.206 19 C 0.042 3.958 20 N -0.332 5.332 21 H 0.045 0.955 22 H 0.102 0.898 23 H 0.052 0.948 24 H 0.083 0.917 25 H 0.126 0.874 26 H 0.198 0.802 27 H 0.042 0.958 28 H 0.075 0.925 29 H 0.252 0.748 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.055 0.945 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.251 -13.630 2.962 14.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.003 3.997 3 N -0.160 5.160 4 C -0.091 4.091 5 C -0.252 4.252 6 C 0.089 3.911 7 N -0.275 5.275 8 C -0.380 4.380 9 H 0.061 0.939 10 C -0.224 4.224 11 N -0.555 5.555 12 Si 0.771 3.229 13 H -0.215 1.215 14 H -0.206 1.206 15 H -0.211 1.211 16 C 0.002 3.998 17 C -0.237 4.237 18 C -0.247 4.247 19 C -0.143 4.143 20 N -0.156 5.156 21 H 0.064 0.936 22 H 0.121 0.879 23 H 0.071 0.929 24 H 0.102 0.898 25 H 0.144 0.856 26 H 0.215 0.785 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.129 0.871 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.074 0.926 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.199 -14.126 2.174 15.208 hybrid contribution 0.638 1.377 -0.693 1.668 sum -4.561 -12.749 1.481 13.621 Atomic orbital electron populations 1.21994 0.93555 1.03880 1.01966 1.21990 0.96317 0.76205 1.05164 1.48903 1.35889 1.10582 1.20675 1.22609 0.95494 0.93978 0.97010 1.21208 1.05643 0.97025 1.01279 1.19194 0.82338 0.97235 0.92354 1.43576 1.06124 1.41410 1.36402 1.18876 1.26294 0.92950 0.99840 0.93856 1.25519 1.01972 0.96252 0.98707 1.70046 1.44649 1.13244 1.27532 0.85747 0.77887 0.77598 0.81710 1.21462 1.20595 1.21101 1.21376 0.88513 0.95039 0.94878 1.23079 0.95890 1.00280 1.04403 1.23257 1.07334 0.94535 0.99587 1.23603 0.96664 0.96835 0.97216 1.77081 1.25719 0.97556 1.15205 0.93602 0.87910 0.92884 0.89836 0.85630 0.78547 0.93922 0.90770 0.93826 0.87123 0.91432 0.87781 0.87609 0.92597 0.82648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 10.10 71.98 0.73 -2.16 16 2 C 0.12 2.50 7.23 86.38 0.62 3.13 16 3 N -0.38 -12.00 3.68 -348.07 -1.28 -13.28 16 4 C 0.06 1.84 11.36 83.54 0.95 2.79 16 5 C -0.24 -9.89 5.68 -20.15 -0.11 -10.01 16 6 C 0.22 9.95 5.82 85.63 0.50 10.45 16 7 N -0.56 -27.28 2.78 -682.35 -1.90 -29.18 16 8 C -0.25 -13.60 8.20 84.03 0.69 -12.91 16 9 H 0.04 2.46 7.15 -2.91 -0.02 2.44 16 10 C -0.03 -1.49 4.97 84.86 0.42 -1.07 16 11 N -0.91 -52.19 11.31 21.65 0.24 -51.94 16 12 Si 0.94 45.29 29.61 68.60 2.03 47.32 16 13 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 14 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 15 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 16 C 0.11 4.51 6.60 44.99 0.30 4.81 16 17 C -0.20 -7.67 9.79 30.62 0.30 -7.37 16 18 C -0.21 -7.59 10.15 30.62 0.31 -7.28 16 19 C 0.04 1.82 11.96 85.24 1.02 2.84 16 20 N -0.33 -13.25 12.42 -57.02 -0.71 -13.96 16 21 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 22 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 25 H 0.13 1.67 8.07 -2.38 -0.02 1.65 16 26 H 0.20 4.88 8.06 -2.91 -0.02 4.86 16 27 H 0.04 1.80 8.04 -2.39 -0.02 1.78 16 28 H 0.07 3.98 5.34 -2.39 -0.01 3.97 16 29 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 30 H 0.11 3.93 8.11 -2.39 -0.02 3.91 16 31 H 0.07 3.04 6.81 -2.39 -0.02 3.02 16 32 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 33 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 34 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.16 7.09 8.06 -2.91 -0.02 7.07 16 Total: -1.00 -65.90 297.91 5.17 -60.73 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 1.06 Total: 17.09 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 5.72 Total: -16.78 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -3.64 Total: -108.36 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -65.90 5.17 -60.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271145776.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.602 kcal (2) G-P(sol) polarization free energy of solvation -65.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds