Wall clock time and date at job start Sun Mar 29 2020 22:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46936 * 2 1 4 4 C 1.50700 * 109.47249 * 119.99724 * 2 1 3 5 5 H 1.08005 * 120.00161 * 120.00025 * 4 2 1 6 6 C 1.37881 * 120.00285 * 300.00487 * 4 2 1 7 7 N 1.31516 * 120.00008 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00213 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47204 * 59.99395 * 8 6 4 10 10 H 1.48499 * 109.47193 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47222 * 299.99628 * 8 6 4 12 12 N 1.46898 * 109.47308 * 239.99850 * 2 1 3 13 13 C 1.46897 * 111.00161 * 306.04956 * 12 2 1 14 14 C 1.46906 * 110.99890 * 70.00087 * 12 2 1 15 15 C 1.52993 * 109.47378 * 170.00285 * 14 12 2 16 16 C 1.50696 * 109.47429 * 179.97438 * 15 14 12 17 17 C 1.38392 * 120.00253 * 124.99641 * 16 15 14 18 18 N 1.32123 * 119.99643 * 179.97438 * 17 16 15 19 19 C 1.32151 * 120.00039 * 0.02562 * 18 17 16 20 20 C 1.38339 * 120.00475 * 0.02562 * 19 18 17 21 21 N 1.32123 * 119.99781 * 304.72113 * 16 15 14 22 22 H 1.08992 * 109.47044 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46762 * 299.99973 * 1 2 3 24 24 H 1.08999 * 109.46939 * 60.00052 * 1 2 3 25 25 H 0.96995 * 120.00203 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.47293 * 183.95420 * 13 12 2 27 27 H 1.09000 * 109.46769 * 303.95193 * 13 12 2 28 28 H 1.08999 * 109.47106 * 63.94333 * 13 12 2 29 29 H 1.09004 * 109.47040 * 290.00074 * 14 12 2 30 30 H 1.09000 * 109.47033 * 50.00026 * 14 12 2 31 31 H 1.09004 * 109.46862 * 299.99897 * 15 14 12 32 32 H 1.09004 * 109.46998 * 59.99419 * 15 14 12 33 33 H 1.08001 * 120.00280 * 359.96009 * 17 16 15 34 34 H 1.08001 * 119.99760 * 180.02562 * 19 18 17 35 35 H 1.07997 * 120.00296 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6035 8 14 2.3213 -1.1202 4.0080 9 1 3.8064 -1.1209 4.0082 10 1 1.8269 -0.4198 5.2205 11 1 1.8258 -2.5201 4.0078 12 7 2.0197 -0.6925 -1.1994 13 6 1.4343 -2.0354 -1.3078 14 6 1.7530 0.0972 -2.4090 15 6 2.4884 -0.5256 -3.5973 16 6 2.2143 0.2842 -4.8383 17 6 3.2668 0.7880 -5.5823 18 7 3.0264 1.4975 -6.6706 19 6 1.7809 1.7264 -7.0484 20 6 0.7287 1.2238 -6.3040 21 7 0.9692 0.5085 -5.2190 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7094 1.1618 3.4844 26 1 1.8665 -2.5521 -2.1648 27 1 1.6466 -2.5987 -0.3991 28 1 0.3556 -1.9520 -1.4398 29 1 0.6814 0.1053 -2.6088 30 1 2.1025 1.1189 -2.2603 31 1 3.5600 -0.5337 -3.3976 32 1 2.1389 -1.5473 -3.7459 33 1 4.2847 0.6014 -5.2733 34 1 1.5844 2.3061 -7.9382 35 1 -0.2891 1.4105 -6.6129 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271231862.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:02 Heat of formation + Delta-G solvation = 50.846333 kcal Electronic energy + Delta-G solvation = -16260.241770 eV Core-core repulsion = 13679.566994 eV Total energy + Delta-G solvation = -2580.674777 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.09256 -37.41186 -34.62132 -33.40465 -32.30135 -29.66551 -27.91062 -25.75593 -25.17815 -24.62961 -23.39164 -21.17782 -19.07913 -17.54475 -17.01335 -16.13990 -16.04399 -15.04001 -14.89603 -14.36137 -14.08188 -13.50733 -13.43465 -12.73002 -12.37151 -12.12722 -11.63216 -11.59769 -11.43432 -11.14945 -11.01310 -10.77842 -10.66317 -10.60826 -10.25602 -10.01019 -9.83344 -9.19468 -9.06208 -8.84017 -8.35434 -7.12730 -5.97898 -4.01638 0.72946 1.10010 3.34511 3.38723 3.41563 3.64867 4.02521 4.23072 4.40092 4.46233 4.72300 5.03325 5.17157 5.33555 5.37071 5.45351 5.50846 5.76460 5.98883 6.17845 6.30490 6.34754 6.46007 6.57387 6.70734 6.87689 6.93313 7.16878 7.23390 7.50146 7.74091 7.76152 7.86663 8.16394 8.40972 8.62302 9.04084 9.63152 11.09224 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.052296 B = 0.004806 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.282510 B = 5824.276567 C = 5926.873161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.211 3.789 3 H 0.037 0.963 4 C -0.498 4.498 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.536 5.536 13 C 0.033 3.967 14 C 0.065 3.935 15 C -0.067 4.067 16 C 0.097 3.903 17 C 0.049 3.951 18 N -0.439 5.439 19 C 0.031 3.969 20 C 0.053 3.947 21 N -0.435 5.435 22 H 0.031 0.969 23 H 0.087 0.913 24 H 0.007 0.993 25 H 0.260 0.740 26 H 0.042 0.958 27 H 0.072 0.928 28 H 0.017 0.983 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.170 0.830 34 H 0.166 0.834 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.716 -0.418 -15.612 15.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.105 3.895 3 H 0.055 0.945 4 C -0.537 4.537 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.260 5.260 13 C -0.116 4.116 14 C -0.065 4.065 15 C -0.106 4.106 16 C -0.044 4.044 17 C -0.111 4.111 18 N -0.153 5.153 19 C -0.129 4.129 20 C -0.107 4.107 21 N -0.151 5.151 22 H 0.050 0.950 23 H 0.105 0.895 24 H 0.026 0.974 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.036 0.964 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.187 0.813 34 H 0.183 0.817 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.155 -0.349 -15.420 15.467 hybrid contribution -0.744 -0.201 0.704 1.044 sum 0.412 -0.551 -14.716 14.732 Atomic orbital electron populations 1.22389 1.00800 0.99411 1.00442 1.19296 0.89810 0.94391 0.85981 0.94528 1.21076 1.30505 1.12466 0.89634 0.91986 1.24934 0.95271 0.95156 0.98994 1.69880 1.37097 1.23078 1.23454 0.86579 0.79204 0.79588 0.82115 1.20244 1.21450 1.20384 1.62341 1.58865 1.02530 1.02234 1.22260 0.96323 0.91965 1.01048 1.21883 0.97704 0.97166 0.89716 1.20648 1.02502 0.98118 0.89286 1.22512 0.89261 0.95511 0.97075 1.23687 1.01116 0.94708 0.91566 1.68417 1.22728 1.10609 1.13593 1.23684 0.89106 0.99296 1.00781 1.23792 1.01260 0.94097 0.91506 1.68344 1.22465 1.11170 1.13088 0.94996 0.89458 0.97441 0.92996 0.93884 0.90904 0.96407 0.94469 0.91952 0.89135 0.89677 0.81290 0.81695 0.81594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 8.22 37.16 0.31 -3.92 16 2 C 0.21 5.35 2.31 -68.87 -0.16 5.19 16 3 H 0.04 1.02 7.93 -51.93 -0.41 0.61 16 4 C -0.50 -13.63 7.91 -34.44 -0.27 -13.90 16 5 H 0.06 1.69 7.12 -52.48 -0.37 1.32 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -25.65 11.32 55.43 0.63 -25.02 16 8 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.54 -11.43 4.70 -236.29 -1.11 -12.54 16 13 C 0.03 0.63 8.45 60.06 0.51 1.14 16 14 C 0.06 1.18 4.39 -3.82 -0.02 1.17 16 15 C -0.07 -0.96 5.55 -27.89 -0.15 -1.12 16 16 C 0.10 1.33 6.17 -82.41 -0.51 0.83 16 17 C 0.05 0.61 10.85 -17.37 -0.19 0.42 16 18 N -0.44 -5.48 10.50 -13.06 -0.14 -5.62 16 19 C 0.03 0.32 11.22 -17.38 -0.20 0.12 16 20 C 0.05 0.59 11.22 -17.37 -0.19 0.39 16 21 N -0.44 -6.19 10.06 -9.29 -0.09 -6.28 16 22 H 0.03 0.76 6.42 -51.93 -0.33 0.43 16 23 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 24 H 0.01 0.15 6.91 -51.93 -0.36 -0.21 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.04 0.70 6.47 -51.93 -0.34 0.37 16 27 H 0.07 1.51 6.76 -51.93 -0.35 1.16 16 28 H 0.02 0.35 6.46 -51.93 -0.34 0.01 16 29 H 0.04 0.73 6.88 -51.93 -0.36 0.37 16 30 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 31 H 0.09 1.19 7.89 -51.93 -0.41 0.78 16 32 H 0.09 1.20 6.55 -51.93 -0.34 0.86 16 33 H 0.17 1.66 7.96 -52.49 -0.42 1.24 16 34 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 284.83 15.07 4.29 4.29 Total: -1.00 -30.50 284.83 -7.15 -37.65 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -4.73 Total: -0.61 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -0.97 Total: -8.19 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: -0.71 Total: -49.47 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.50 -7.15 -37.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271231862.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.493 kcal (2) G-P(sol) polarization free energy of solvation -30.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds