Wall clock time and date at job start Sun Mar 29 2020 22:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46936 * 2 1 4 4 C 1.50700 * 109.47249 * 119.99724 * 2 1 3 5 5 H 1.08005 * 120.00161 * 120.00025 * 4 2 1 6 6 C 1.37881 * 120.00285 * 300.00487 * 4 2 1 7 7 N 1.31516 * 120.00008 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00213 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47204 * 59.99395 * 8 6 4 10 10 H 1.48499 * 109.47193 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47222 * 299.99628 * 8 6 4 12 12 N 1.46898 * 109.47308 * 239.99850 * 2 1 3 13 13 C 1.46897 * 111.00161 * 306.04956 * 12 2 1 14 14 C 1.46906 * 110.99890 * 70.00087 * 12 2 1 15 15 C 1.52993 * 109.47378 * 170.00285 * 14 12 2 16 16 C 1.50696 * 109.47429 * 179.97438 * 15 14 12 17 17 C 1.38392 * 120.00253 * 124.99641 * 16 15 14 18 18 N 1.32123 * 119.99643 * 179.97438 * 17 16 15 19 19 C 1.32151 * 120.00039 * 0.02562 * 18 17 16 20 20 C 1.38339 * 120.00475 * 0.02562 * 19 18 17 21 21 N 1.32123 * 119.99781 * 304.72113 * 16 15 14 22 22 H 1.08992 * 109.47044 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46762 * 299.99973 * 1 2 3 24 24 H 1.08999 * 109.46939 * 60.00052 * 1 2 3 25 25 H 0.96995 * 120.00203 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.47293 * 183.95420 * 13 12 2 27 27 H 1.09000 * 109.46769 * 303.95193 * 13 12 2 28 28 H 1.08999 * 109.47106 * 63.94333 * 13 12 2 29 29 H 1.09004 * 109.47040 * 290.00074 * 14 12 2 30 30 H 1.09000 * 109.47033 * 50.00026 * 14 12 2 31 31 H 1.09004 * 109.46862 * 299.99897 * 15 14 12 32 32 H 1.09004 * 109.46998 * 59.99419 * 15 14 12 33 33 H 1.08001 * 120.00280 * 359.96009 * 17 16 15 34 34 H 1.08001 * 119.99760 * 180.02562 * 19 18 17 35 35 H 1.07997 * 120.00296 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6035 8 14 2.3213 -1.1202 4.0080 9 1 3.8064 -1.1209 4.0082 10 1 1.8269 -0.4198 5.2205 11 1 1.8258 -2.5201 4.0078 12 7 2.0197 -0.6925 -1.1994 13 6 1.4343 -2.0354 -1.3078 14 6 1.7530 0.0972 -2.4090 15 6 2.4884 -0.5256 -3.5973 16 6 2.2143 0.2842 -4.8383 17 6 3.2668 0.7880 -5.5823 18 7 3.0264 1.4975 -6.6706 19 6 1.7809 1.7264 -7.0484 20 6 0.7287 1.2238 -6.3040 21 7 0.9692 0.5085 -5.2190 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7094 1.1618 3.4844 26 1 1.8665 -2.5521 -2.1648 27 1 1.6466 -2.5987 -0.3991 28 1 0.3556 -1.9520 -1.4398 29 1 0.6814 0.1053 -2.6088 30 1 2.1025 1.1189 -2.2603 31 1 3.5600 -0.5337 -3.3976 32 1 2.1389 -1.5473 -3.7459 33 1 4.2847 0.6014 -5.2733 34 1 1.5844 2.3061 -7.9382 35 1 -0.2891 1.4105 -6.6129 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271231862.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:01 Heat of formation + Delta-G solvation = 29.619134 kcal Electronic energy + Delta-G solvation = -16261.162251 eV Core-core repulsion = 13679.566994 eV Total energy + Delta-G solvation = -2581.595257 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.00310 -39.10694 -35.78782 -34.85414 -33.78825 -31.18856 -29.47865 -27.35683 -27.11771 -25.60879 -24.66112 -22.59413 -20.85503 -18.49886 -18.19646 -17.86433 -17.27708 -16.58088 -16.15157 -15.88685 -15.54200 -15.15421 -14.59145 -14.23834 -13.94095 -13.52790 -13.19476 -13.10005 -12.71535 -12.64814 -12.54444 -12.47576 -12.40195 -12.19478 -12.04583 -11.85189 -11.57685 -10.93493 -10.47498 -10.11038 -9.97401 -8.86699 -8.08752 -6.20014 -0.14752 0.18654 1.45074 1.46853 1.54358 2.44797 2.74616 3.11468 3.20323 3.38600 3.42581 3.63187 4.00961 4.12569 4.19788 4.43295 4.52202 4.61797 4.64173 4.69122 4.76119 4.83988 4.88700 5.03908 5.09483 5.18553 5.26354 5.48764 5.53141 5.70651 5.79624 6.21542 6.35386 6.48914 6.73197 6.86509 6.93235 7.49249 8.97469 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.052296 B = 0.004806 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.282510 B = 5824.276567 C = 5926.873161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.215 3.785 3 H 0.002 0.998 4 C -0.513 4.513 5 H 0.060 0.940 6 C 0.009 3.991 7 N -0.924 5.924 8 Si 0.961 3.039 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.270 1.270 12 N -0.542 5.542 13 C 0.037 3.963 14 C 0.072 3.928 15 C -0.053 4.053 16 C 0.077 3.923 17 C 0.047 3.953 18 N -0.459 5.459 19 C 0.041 3.959 20 C 0.049 3.951 21 N -0.468 5.468 22 H 0.034 0.966 23 H 0.060 0.940 24 H 0.017 0.983 25 H 0.261 0.739 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.013 0.987 29 H 0.024 0.976 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.189 0.811 34 H 0.204 0.796 35 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.124 -1.029 -16.978 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.107 3.893 3 H 0.019 0.981 4 C -0.551 4.551 5 H 0.078 0.922 6 C -0.189 4.189 7 N -0.564 5.564 8 Si 0.787 3.213 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.195 1.195 12 N -0.265 5.265 13 C -0.111 4.111 14 C -0.057 4.057 15 C -0.092 4.092 16 C -0.063 4.063 17 C -0.112 4.112 18 N -0.174 5.174 19 C -0.119 4.119 20 C -0.111 4.111 21 N -0.184 5.184 22 H 0.053 0.947 23 H 0.079 0.921 24 H 0.036 0.964 25 H 0.070 0.930 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.032 0.968 29 H 0.042 0.958 30 H 0.065 0.935 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.206 0.794 34 H 0.221 0.779 35 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 1.581 -0.979 -16.796 16.899 hybrid contribution -0.921 0.060 1.001 1.361 sum 0.660 -0.919 -15.795 15.836 Atomic orbital electron populations 1.22184 1.00529 0.99217 0.99583 1.19061 0.89884 0.92781 0.87547 0.98057 1.21353 1.30559 1.12509 0.90715 0.92185 1.25733 0.95404 0.95820 1.01972 1.70020 1.38023 1.24322 1.24036 0.85559 0.78748 0.78643 0.78346 1.19677 1.21206 1.19541 1.62253 1.58898 1.03344 1.02027 1.22256 0.96218 0.90863 1.01775 1.21819 0.97437 0.96449 0.89947 1.20464 1.02633 0.98108 0.87973 1.22352 0.89807 0.96791 0.97357 1.23926 1.01661 0.94199 0.91394 1.68500 1.23923 1.11136 1.13794 1.24329 0.88190 0.98073 1.01273 1.24354 1.03093 0.93133 0.90508 1.68279 1.22978 1.12432 1.14700 0.94687 0.92112 0.96359 0.93039 0.90375 0.92471 0.96842 0.95811 0.93532 0.87787 0.89249 0.79434 0.77928 0.78516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.84 8.22 71.98 0.59 -7.25 16 2 C 0.21 11.12 2.31 44.17 0.10 11.22 16 3 H 0.00 0.09 7.93 -2.38 -0.02 0.07 16 4 C -0.51 -28.38 7.91 25.60 0.20 -28.18 16 5 H 0.06 3.28 7.12 -2.91 -0.02 3.26 16 6 C 0.01 0.49 5.30 84.66 0.45 0.94 16 7 N -0.92 -53.88 11.32 21.45 0.24 -53.64 16 8 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 10 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 N -0.54 -23.14 4.70 -901.48 -4.24 -27.37 16 13 C 0.04 1.41 8.45 127.69 1.08 2.49 16 14 C 0.07 2.66 4.39 86.30 0.38 3.04 16 15 C -0.05 -1.47 5.55 29.84 0.17 -1.31 16 16 C 0.08 2.02 6.17 42.55 0.26 2.28 16 17 C 0.05 1.08 10.85 84.69 0.92 2.00 16 18 N -0.46 -10.47 10.50 -195.23 -2.05 -12.52 16 19 C 0.04 0.73 11.22 84.67 0.95 1.68 16 20 C 0.05 0.97 11.22 84.67 0.95 1.92 16 21 N -0.47 -12.72 10.06 -183.30 -1.84 -14.57 16 22 H 0.03 1.69 6.42 -2.39 -0.02 1.67 16 23 H 0.06 3.39 6.07 -2.39 -0.01 3.37 16 24 H 0.02 0.83 6.91 -2.39 -0.02 0.81 16 25 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 26 H 0.08 2.41 6.47 -2.39 -0.02 2.39 16 27 H 0.06 2.34 6.76 -2.39 -0.02 2.32 16 28 H 0.01 0.51 6.46 -2.39 -0.02 0.50 16 29 H 0.02 0.93 6.88 -2.38 -0.02 0.92 16 30 H 0.05 1.82 7.93 -2.39 -0.02 1.81 16 31 H 0.10 2.57 7.89 -2.38 -0.02 2.55 16 32 H 0.09 2.37 6.55 -2.39 -0.02 2.35 16 33 H 0.19 3.35 7.96 -2.91 -0.02 3.33 16 34 H 0.20 1.89 8.06 -2.91 -0.02 1.86 16 35 H 0.20 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -66.09 284.83 1.26 -64.83 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 1.08 Total: 8.58 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: 6.05 Total: -11.17 kcal Atomic # 7 Polarization: -100.21 SS G_CDS: -7.89 Total: -108.10 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -66.09 1.26 -64.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271231862.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.444 kcal (2) G-P(sol) polarization free energy of solvation -66.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds