Wall clock time and date at job start Sun Mar 29 2020 22:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46904 * 110.99913 * 176.04489 * 12 2 1 14 14 C 1.46891 * 111.00371 * 300.00463 * 12 2 1 15 15 C 1.53003 * 109.47393 * 170.00148 * 14 12 2 16 16 C 1.50700 * 109.47245 * 180.02562 * 15 14 12 17 17 C 1.38386 * 120.00528 * 124.99492 * 16 15 14 18 18 N 1.32128 * 119.99819 * 179.97438 * 17 16 15 19 19 C 1.32150 * 119.99748 * 0.02562 * 18 17 16 20 20 C 1.38333 * 120.00717 * 359.97438 * 19 18 17 21 21 N 1.32127 * 119.99831 * 304.71878 * 16 15 14 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.46959 * 60.00498 * 13 12 2 27 27 H 1.09004 * 109.46998 * 180.02562 * 13 12 2 28 28 H 1.09000 * 109.47411 * 300.00539 * 13 12 2 29 29 H 1.09003 * 109.47077 * 289.99597 * 14 12 2 30 30 H 1.08998 * 109.47654 * 49.99459 * 14 12 2 31 31 H 1.09003 * 109.46576 * 299.99211 * 15 14 12 32 32 H 1.08989 * 109.47469 * 59.99330 * 15 14 12 33 33 H 1.08004 * 119.99943 * 359.95830 * 17 16 15 34 34 H 1.08002 * 119.99298 * 180.02562 * 19 18 17 35 35 H 1.08000 * 120.00529 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6924 1.1995 13 6 3.4851 -0.7945 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8627 -0.9042 3.6342 16 6 1.3789 -0.2211 4.8873 17 6 0.5133 -0.8787 5.7438 18 7 0.0896 -0.2798 6.8427 19 6 0.4920 0.9471 7.1236 20 6 1.3572 1.6045 6.2676 21 7 1.7854 1.0036 5.1711 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 0.7089 1.1612 -3.4844 26 1 3.9187 0.2052 1.1592 27 1 3.8209 -1.3116 2.0860 28 1 3.8030 -1.3531 0.3068 29 1 2.0518 0.9346 2.5280 30 1 0.4722 0.1325 2.3564 31 1 1.3594 -1.8652 3.5273 32 1 2.9390 -1.0630 3.6989 33 1 0.1839 -1.8812 5.5138 34 1 0.1459 1.4364 8.0221 35 1 1.6864 2.6071 6.4974 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271231865.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:04 Heat of formation + Delta-G solvation = 51.924691 kcal Electronic energy + Delta-G solvation = -16246.525299 eV Core-core repulsion = 13665.897284 eV Total energy + Delta-G solvation = -2580.628015 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.09178 -37.26516 -34.58609 -33.39403 -32.31402 -29.61625 -28.63132 -25.92314 -24.70441 -24.32010 -23.28077 -21.15525 -19.26082 -17.53405 -17.01094 -16.27980 -16.01723 -15.15652 -14.90012 -14.25086 -14.09109 -13.45640 -13.21363 -13.00258 -12.25506 -12.19662 -11.88303 -11.59313 -11.22866 -11.20342 -11.05436 -10.88367 -10.64094 -10.34357 -10.08920 -10.02887 -9.84087 -9.15684 -9.07881 -8.82085 -8.40095 -7.15471 -5.99321 -4.03879 0.73073 1.10101 3.32020 3.38292 3.41298 3.64983 4.02633 4.23161 4.39466 4.45469 4.72065 5.02737 5.16681 5.31583 5.37299 5.44874 5.51484 5.76587 5.98928 6.16557 6.32044 6.35304 6.46113 6.58148 6.81023 6.87649 7.07248 7.17645 7.23813 7.54382 7.74330 7.76149 7.84636 8.22294 8.34072 8.62043 9.02694 9.61083 11.07600 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.055039 B = 0.004811 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.607858 B = 5818.487885 C = 5946.622601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.212 3.788 3 H -0.002 1.002 4 C -0.503 4.503 5 H 0.064 0.936 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.539 5.539 13 C 0.036 3.964 14 C 0.060 3.940 15 C -0.066 4.066 16 C 0.097 3.903 17 C 0.049 3.951 18 N -0.439 5.439 19 C 0.031 3.969 20 C 0.054 3.946 21 N -0.435 5.435 22 H 0.034 0.966 23 H 0.085 0.915 24 H 0.007 0.993 25 H 0.260 0.740 26 H 0.012 0.988 27 H 0.043 0.957 28 H 0.075 0.925 29 H 0.032 0.968 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.170 0.830 34 H 0.166 0.834 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.529 -0.541 15.575 15.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.106 3.894 3 H 0.015 0.985 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.263 5.263 13 C -0.112 4.112 14 C -0.069 4.069 15 C -0.105 4.105 16 C -0.043 4.043 17 C -0.111 4.111 18 N -0.153 5.153 19 C -0.129 4.129 20 C -0.106 4.106 21 N -0.151 5.151 22 H 0.054 0.946 23 H 0.103 0.897 24 H 0.026 0.974 25 H 0.070 0.930 26 H 0.030 0.970 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.187 0.813 34 H 0.183 0.817 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.256 -0.897 15.421 15.449 hybrid contribution 0.560 0.562 -0.775 1.109 sum 0.816 -0.336 14.646 14.672 Atomic orbital electron populations 1.21858 0.97827 0.99607 0.99811 1.19235 0.92256 0.92023 0.85843 0.98456 1.21161 1.30991 1.12243 0.89744 0.91811 1.24940 0.95244 0.95071 0.99034 1.69894 1.36994 1.23062 1.23375 0.86518 0.79206 0.79281 0.82506 1.20677 1.21375 1.19934 1.62134 1.09286 1.52757 1.02165 1.22239 0.88875 0.99177 1.00952 1.21965 1.00881 0.94675 0.89361 1.20649 1.02042 0.98747 0.89088 1.22513 0.93566 0.91089 0.97177 1.23683 0.95279 1.01368 0.90757 1.68419 1.20446 1.09428 1.17042 1.23683 0.96410 0.92053 1.00727 1.23791 0.94985 1.01075 0.90795 1.68343 1.21270 1.08942 1.16525 0.94646 0.89680 0.97419 0.93013 0.96973 0.93806 0.90662 0.94974 0.91063 0.89159 0.89687 0.81302 0.81692 0.81587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 8.76 37.16 0.33 -2.97 16 2 C 0.21 5.43 2.06 -68.87 -0.14 5.29 16 3 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 4 C -0.50 -13.79 7.93 -34.44 -0.27 -14.06 16 5 H 0.06 1.73 6.39 -52.49 -0.34 1.40 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.67 11.32 55.43 0.63 -25.04 16 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.30 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 12 N -0.54 -11.59 4.62 -236.29 -1.09 -12.69 16 13 C 0.04 0.71 9.05 60.07 0.54 1.25 16 14 C 0.06 1.11 4.64 -3.83 -0.02 1.10 16 15 C -0.07 -0.97 5.56 -27.88 -0.16 -1.12 16 16 C 0.10 1.34 6.17 -82.41 -0.51 0.83 16 17 C 0.05 0.61 10.85 -17.37 -0.19 0.42 16 18 N -0.44 -5.49 10.50 -13.06 -0.14 -5.62 16 19 C 0.03 0.32 11.22 -17.38 -0.20 0.12 16 20 C 0.05 0.59 11.22 -17.38 -0.20 0.39 16 21 N -0.44 -6.22 10.07 -9.29 -0.09 -6.32 16 22 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.08 2.30 6.07 -51.93 -0.32 1.99 16 24 H 0.01 0.16 6.20 -51.93 -0.32 -0.16 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.04 0.72 6.30 -51.93 -0.33 0.39 16 28 H 0.07 1.57 6.23 -51.93 -0.32 1.25 16 29 H 0.03 0.64 7.95 -51.93 -0.41 0.22 16 30 H 0.07 1.37 5.83 -51.93 -0.30 1.07 16 31 H 0.09 1.19 7.89 -51.93 -0.41 0.78 16 32 H 0.08 1.21 6.47 -51.93 -0.34 0.87 16 33 H 0.17 1.66 7.95 -52.48 -0.42 1.24 16 34 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.17 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 286.27 15.07 4.31 4.31 Total: -1.00 -30.75 286.27 -7.05 -37.80 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -4.75 Total: -1.54 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -0.90 Total: -7.22 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.70 Total: -49.66 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.75 -7.05 -37.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271231865.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.726 kcal (2) G-P(sol) polarization free energy of solvation -30.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds