Wall clock time and date at job start Sun Mar 29 2020 22:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46904 * 110.99913 * 176.04489 * 12 2 1 14 14 C 1.46891 * 111.00371 * 300.00463 * 12 2 1 15 15 C 1.53003 * 109.47393 * 170.00148 * 14 12 2 16 16 C 1.50700 * 109.47245 * 180.02562 * 15 14 12 17 17 C 1.38386 * 120.00528 * 124.99492 * 16 15 14 18 18 N 1.32128 * 119.99819 * 179.97438 * 17 16 15 19 19 C 1.32150 * 119.99748 * 0.02562 * 18 17 16 20 20 C 1.38333 * 120.00717 * 359.97438 * 19 18 17 21 21 N 1.32127 * 119.99831 * 304.71878 * 16 15 14 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.46959 * 60.00498 * 13 12 2 27 27 H 1.09004 * 109.46998 * 180.02562 * 13 12 2 28 28 H 1.09000 * 109.47411 * 300.00539 * 13 12 2 29 29 H 1.09003 * 109.47077 * 289.99597 * 14 12 2 30 30 H 1.08998 * 109.47654 * 49.99459 * 14 12 2 31 31 H 1.09003 * 109.46576 * 299.99211 * 15 14 12 32 32 H 1.08989 * 109.47469 * 59.99330 * 15 14 12 33 33 H 1.08004 * 119.99943 * 359.95830 * 17 16 15 34 34 H 1.08002 * 119.99298 * 180.02562 * 19 18 17 35 35 H 1.08000 * 120.00529 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6924 1.1995 13 6 3.4851 -0.7945 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8627 -0.9042 3.6342 16 6 1.3789 -0.2211 4.8873 17 6 0.5133 -0.8787 5.7438 18 7 0.0896 -0.2798 6.8427 19 6 0.4920 0.9471 7.1236 20 6 1.3572 1.6045 6.2676 21 7 1.7854 1.0036 5.1711 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 0.7089 1.1612 -3.4844 26 1 3.9187 0.2052 1.1592 27 1 3.8209 -1.3116 2.0860 28 1 3.8030 -1.3531 0.3068 29 1 2.0518 0.9346 2.5280 30 1 0.4722 0.1325 2.3564 31 1 1.3594 -1.8652 3.5273 32 1 2.9390 -1.0630 3.6989 33 1 0.1839 -1.8812 5.5138 34 1 0.1459 1.4364 8.0221 35 1 1.6864 2.6071 6.4974 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271231865.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:04 Heat of formation + Delta-G solvation = 30.482361 kcal Electronic energy + Delta-G solvation = -16247.455109 eV Core-core repulsion = 13665.897284 eV Total energy + Delta-G solvation = -2581.557825 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.00427 -38.96046 -35.76800 -34.87938 -33.75214 -31.32056 -30.09539 -27.62922 -26.22345 -25.54044 -24.60393 -22.59847 -21.04975 -18.48877 -18.35915 -17.85798 -17.27600 -16.63707 -16.22886 -15.80387 -15.45412 -15.10576 -14.65416 -14.27081 -13.98623 -13.62430 -13.32278 -12.93831 -12.80084 -12.59055 -12.55080 -12.49768 -12.25871 -12.11018 -12.00664 -11.94486 -11.51324 -10.88042 -10.50353 -10.11057 -9.97274 -8.95925 -8.10446 -6.22690 -0.14770 0.18626 1.44042 1.44705 1.55022 2.43276 2.74534 3.10294 3.18429 3.37574 3.41886 3.62376 3.99901 4.11888 4.19934 4.42079 4.51670 4.61268 4.63273 4.69022 4.75130 4.91345 4.99095 5.04698 5.10511 5.13891 5.29604 5.48358 5.51267 5.73417 5.78558 6.24934 6.34768 6.39287 6.72396 6.86580 6.92249 7.46713 8.95962 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.055039 B = 0.004811 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.607858 B = 5818.487885 C = 5946.622601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.215 3.785 3 H -0.044 1.044 4 C -0.518 4.518 5 H 0.064 0.936 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.963 3.037 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.266 1.266 12 N -0.540 5.540 13 C 0.039 3.961 14 C 0.067 3.933 15 C -0.053 4.053 16 C 0.077 3.923 17 C 0.048 3.952 18 N -0.458 5.458 19 C 0.042 3.958 20 C 0.049 3.951 21 N -0.469 5.469 22 H 0.036 0.964 23 H 0.059 0.941 24 H 0.025 0.975 25 H 0.261 0.739 26 H 0.000 1.000 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.014 0.986 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.190 0.810 34 H 0.204 0.796 35 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.664 -1.362 16.985 17.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.108 3.892 3 H -0.026 1.026 4 C -0.557 4.557 5 H 0.082 0.918 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.788 3.212 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.191 1.191 12 N -0.264 5.264 13 C -0.109 4.109 14 C -0.061 4.061 15 C -0.091 4.091 16 C -0.063 4.063 17 C -0.111 4.111 18 N -0.173 5.173 19 C -0.118 4.118 20 C -0.111 4.111 21 N -0.185 5.185 22 H 0.055 0.945 23 H 0.078 0.922 24 H 0.044 0.956 25 H 0.070 0.930 26 H 0.018 0.982 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.032 0.968 30 H 0.079 0.921 31 H 0.124 0.876 32 H 0.106 0.894 33 H 0.207 0.793 34 H 0.221 0.779 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 0.398 -1.743 16.842 16.937 hybrid contribution 0.507 0.915 -1.085 1.507 sum 0.905 -0.829 15.758 15.805 Atomic orbital electron populations 1.21663 0.97374 0.99399 0.99407 1.19050 0.92636 0.89996 0.87512 1.02628 1.21449 1.31117 1.12338 0.90762 0.91803 1.25761 0.95372 0.95743 1.02074 1.70033 1.37923 1.24335 1.24037 0.85482 0.78941 0.78147 0.78616 1.20037 1.21152 1.19078 1.62099 1.10375 1.52114 1.01860 1.22247 0.87731 0.98729 1.02180 1.21916 0.99753 0.94737 0.89718 1.20467 1.02524 0.98518 0.87639 1.22351 0.95010 0.91536 0.97433 1.23930 0.94546 1.02147 0.90449 1.68506 1.21086 1.10534 1.17175 1.24326 0.94904 0.91234 1.01355 1.24346 0.94719 1.02220 0.89833 1.68279 1.22444 1.09560 1.18250 0.94531 0.92242 0.95648 0.92985 0.98152 0.90050 0.92021 0.96770 0.92148 0.87590 0.89385 0.79342 0.77918 0.78569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.07 8.76 71.98 0.63 -5.44 16 2 C 0.21 11.28 2.06 44.17 0.09 11.37 16 3 H -0.04 -2.61 8.14 -2.39 -0.02 -2.63 16 4 C -0.52 -28.78 7.93 25.60 0.20 -28.58 16 5 H 0.06 3.47 6.39 -2.91 -0.02 3.46 16 6 C 0.01 0.49 5.30 84.66 0.45 0.94 16 7 N -0.92 -54.06 11.32 21.45 0.24 -53.82 16 8 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 10 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 12 N -0.54 -23.30 4.62 -901.47 -4.17 -27.47 16 13 C 0.04 1.54 9.05 127.69 1.16 2.70 16 14 C 0.07 2.50 4.64 86.31 0.40 2.90 16 15 C -0.05 -1.47 5.56 29.85 0.17 -1.30 16 16 C 0.08 2.01 6.17 42.55 0.26 2.28 16 17 C 0.05 1.10 10.85 84.68 0.92 2.02 16 18 N -0.46 -10.38 10.50 -195.23 -2.05 -12.43 16 19 C 0.04 0.74 11.22 84.67 0.95 1.69 16 20 C 0.05 0.97 11.22 84.67 0.95 1.92 16 21 N -0.47 -12.87 10.07 -183.30 -1.84 -14.72 16 22 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 24 H 0.02 1.14 6.20 -2.38 -0.01 1.12 16 25 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 26 H 0.00 -0.01 8.14 -2.39 -0.02 -0.02 16 27 H 0.08 2.55 6.30 -2.38 -0.02 2.53 16 28 H 0.06 2.56 6.23 -2.39 -0.01 2.55 16 29 H 0.01 0.57 7.95 -2.39 -0.02 0.55 16 30 H 0.06 2.34 5.83 -2.39 -0.01 2.32 16 31 H 0.11 2.58 7.89 -2.39 -0.02 2.56 16 32 H 0.09 2.35 6.47 -2.39 -0.02 2.34 16 33 H 0.19 3.30 7.95 -2.91 -0.02 3.28 16 34 H 0.20 1.88 8.06 -2.91 -0.02 1.86 16 35 H 0.20 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -67.02 286.27 1.46 -65.56 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: 1.08 Total: 6.53 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 6.18 Total: -9.52 kcal Atomic # 7 Polarization: -100.62 SS G_CDS: -7.82 Total: -108.43 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -67.02 1.46 -65.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271231865.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.043 kcal (2) G-P(sol) polarization free energy of solvation -67.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds