Wall clock time and date at job start Sun Mar 29 2020 21:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47583 * 2 1 4 4 C 1.38118 * 120.40183 * 124.99376 * 3 2 1 5 5 C 1.39631 * 118.33024 * 180.02562 * 4 3 2 6 6 N 1.38536 * 120.52946 * 179.97438 * 5 4 3 7 7 C 1.46505 * 119.99947 * 0.02562 * 6 5 4 8 8 C 1.52997 * 109.47212 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47466 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99890 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00362 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99850 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47052 * 89.99717 * 13 11 9 15 15 H 1.48495 * 109.47307 * 209.99656 * 13 11 9 16 16 H 1.48500 * 109.47143 * 330.00164 * 13 11 9 17 17 N 1.32989 * 118.93718 * 0.26019 * 5 4 3 18 18 C 1.31749 * 120.68691 * 359.48348 * 17 5 4 19 19 C 1.50703 * 119.08447 * 180.27016 * 18 17 5 20 20 N 1.31785 * 121.83172 * 0.53012 * 18 17 5 21 21 H 1.08999 * 109.46976 * 59.99984 * 1 2 3 22 22 H 1.08997 * 109.47111 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47247 * 299.99894 * 1 2 3 24 24 H 1.09007 * 109.47577 * 240.00016 * 2 1 3 25 25 H 1.09004 * 109.47633 * 119.99811 * 2 1 3 26 26 H 1.07996 * 120.83396 * 0.02562 * 4 3 2 27 27 H 0.96996 * 120.00446 * 179.97438 * 6 5 4 28 28 H 1.09002 * 109.47068 * 299.99753 * 7 6 5 29 29 H 1.09001 * 109.47372 * 59.99840 * 7 6 5 30 30 H 1.09002 * 109.47153 * 300.00008 * 8 7 6 31 31 H 1.08998 * 109.47533 * 59.99637 * 8 7 6 32 32 H 0.96994 * 119.99814 * 180.02562 * 12 11 9 33 33 H 1.09009 * 109.46745 * 270.25508 * 19 18 17 34 34 H 1.09000 * 109.47209 * 30.24960 * 19 18 17 35 35 H 1.08991 * 109.47379 * 150.25802 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9095 1.8520 0.9759 5 6 3.3470 3.1773 0.9349 6 7 4.2265 3.6580 1.8913 7 6 4.7054 2.7736 2.9565 8 6 5.6577 3.5462 3.8713 9 6 6.1499 2.6366 4.9674 10 1 5.8170 1.6100 5.0073 11 6 7.0259 3.1147 5.9188 12 7 7.4557 2.3208 6.8751 13 14 7.6033 4.8899 5.8486 14 1 6.6751 5.7437 6.6327 15 1 8.9699 4.9890 6.4210 16 1 7.6236 5.3483 4.4363 17 7 2.9015 3.9723 -0.0337 18 6 2.0687 3.5171 -0.9474 19 6 1.5914 4.4479 -2.0323 20 7 1.6373 2.2719 -0.9362 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.2484 1.1809 1.7512 27 1 4.5258 4.5800 1.8553 28 1 3.8569 2.4117 3.5372 29 1 5.2321 1.9268 2.5164 30 1 6.5062 3.9077 3.2904 31 1 5.1315 4.3932 4.3115 32 1 8.0717 2.6573 7.5445 33 1 0.6826 4.9526 -1.7042 34 1 2.3632 5.1888 -2.2410 35 1 1.3830 3.8757 -2.9363 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273280711.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:38 Heat of formation + Delta-G solvation = 25.841884 kcal Electronic energy + Delta-G solvation = -15837.781151 eV Core-core repulsion = 13256.022100 eV Total energy + Delta-G solvation = -2581.759051 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.78373 -36.69136 -35.01614 -33.41310 -31.90793 -31.11355 -29.58938 -28.23404 -25.09436 -24.51539 -22.02157 -21.19952 -20.72000 -17.79343 -17.10610 -16.23235 -15.31530 -15.02264 -14.59449 -14.36696 -14.24121 -14.14592 -13.89810 -13.25518 -12.75823 -12.68981 -12.38506 -12.31906 -11.66063 -11.55870 -11.49102 -11.20230 -10.80220 -10.46747 -10.28345 -10.20441 -9.97966 -9.44529 -9.34167 -8.94982 -8.68972 -7.80239 -6.19124 -4.20250 1.26266 1.63215 3.21558 3.29818 3.31397 3.34822 4.04192 4.15348 4.31934 4.44432 4.91528 5.09751 5.14312 5.22242 5.29331 5.53396 5.56011 5.58202 5.62662 5.76155 5.81571 5.89568 5.96515 5.98424 6.09019 6.20218 6.35124 6.51895 6.89284 7.06685 7.10821 7.53471 7.61013 7.89491 8.33638 8.54449 8.82741 9.41031 10.93549 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.033531 B = 0.004979 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.844293 B = 5622.610890 C = 6374.659637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.073 4.073 3 C 0.202 3.798 4 C -0.297 4.297 5 C 0.444 3.556 6 N -0.704 5.704 7 C 0.133 3.867 8 C -0.021 4.021 9 C -0.526 4.526 10 H 0.076 0.924 11 C 0.072 3.928 12 N -0.897 5.897 13 Si 0.881 3.119 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.266 1.266 17 N -0.590 5.590 18 C 0.355 3.645 19 C -0.080 4.080 20 N -0.569 5.569 21 H 0.065 0.935 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.142 0.858 27 H 0.404 0.596 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.024 0.976 31 H 0.020 0.980 32 H 0.266 0.734 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.300 -0.066 -14.525 18.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 C 0.060 3.940 4 C -0.326 4.326 5 C 0.199 3.801 6 N -0.333 5.333 7 C 0.010 3.990 8 C -0.059 4.059 9 C -0.564 4.564 10 H 0.094 0.906 11 C -0.131 4.131 12 N -0.534 5.534 13 Si 0.708 3.292 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.190 1.190 17 N -0.317 5.317 18 C 0.086 3.914 19 C -0.139 4.139 20 N -0.290 5.290 21 H 0.084 0.916 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.160 0.840 27 H 0.240 0.760 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.042 0.958 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.389 0.356 -14.841 18.711 hybrid contribution 0.951 0.735 0.952 1.533 sum -10.439 1.091 -13.888 17.408 Atomic orbital electron populations 1.21634 0.93985 1.01587 1.02655 1.20493 0.97048 0.90171 1.03351 1.21263 0.89134 0.95609 0.87947 1.22015 1.07753 0.97016 1.05773 1.18639 0.86220 0.88775 0.86509 1.45088 1.45917 1.15331 1.26977 1.21680 0.97776 0.92982 0.86537 1.19771 0.94363 0.96723 0.95053 1.20849 1.27668 0.98755 1.09139 0.90602 1.24972 0.95513 0.97697 0.94888 1.69890 1.32892 1.35900 1.14763 0.86768 0.78321 0.85309 0.78824 1.20134 1.21149 1.19046 1.67759 1.18655 1.38719 1.06552 1.22776 0.87501 0.89319 0.91828 1.20485 1.01719 0.97029 0.94638 1.67975 1.29606 1.03996 1.27470 0.91569 0.92345 0.92940 0.89780 0.90036 0.84040 0.76031 0.91961 0.91943 0.95768 0.96207 0.92432 0.90060 0.90059 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.78 37.16 0.36 -1.03 16 2 C -0.07 -0.80 6.36 -27.88 -0.18 -0.97 16 3 C 0.20 2.93 6.20 -82.33 -0.51 2.42 16 4 C -0.30 -4.69 9.02 -39.11 -0.35 -5.04 16 5 C 0.44 7.61 7.71 -154.78 -1.19 6.42 16 6 N -0.70 -12.12 5.71 -60.27 -0.34 -12.46 16 7 C 0.13 2.49 4.87 -4.04 -0.02 2.47 16 8 C -0.02 -0.47 4.16 -27.89 -0.12 -0.59 16 9 C -0.53 -14.20 9.66 -34.44 -0.33 -14.53 16 10 H 0.08 2.18 7.99 -52.49 -0.42 1.76 16 11 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 12 N -0.90 -26.68 13.96 55.43 0.77 -25.91 16 13 Si 0.88 20.89 27.47 -169.99 -4.67 16.22 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 17 N -0.59 -9.92 10.37 -9.97 -0.10 -10.03 16 18 C 0.36 5.35 7.64 -157.24 -1.20 4.15 16 19 C -0.08 -0.85 10.32 36.01 0.37 -0.48 16 20 N -0.57 -8.58 9.93 -7.07 -0.07 -8.65 16 21 H 0.07 0.70 7.98 -51.93 -0.41 0.28 16 22 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.08 0.80 7.93 -51.93 -0.41 0.39 16 26 H 0.14 2.09 6.81 -52.49 -0.36 1.74 16 27 H 0.40 6.67 8.60 -40.82 -0.35 6.32 16 28 H 0.06 1.16 7.97 -51.93 -0.41 0.75 16 29 H 0.06 1.16 7.97 -51.93 -0.41 0.75 16 30 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 31 H 0.02 0.44 7.57 -51.93 -0.39 0.04 16 32 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 296.56 15.07 4.47 4.47 Total: -1.00 -30.34 296.56 -8.46 -38.80 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -5.25 Total: 2.84 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -3.27 Total: -5.28 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: 0.26 Total: -57.05 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.34 -8.46 -38.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273280711.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.644 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds