Wall clock time and date at job start Sun Mar 29 2020 21:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47583 * 2 1 4 4 C 1.38118 * 120.40183 * 124.99376 * 3 2 1 5 5 C 1.39631 * 118.33024 * 180.02562 * 4 3 2 6 6 N 1.38536 * 120.52946 * 179.97438 * 5 4 3 7 7 C 1.46505 * 119.99947 * 0.02562 * 6 5 4 8 8 C 1.52997 * 109.47212 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47466 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99890 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00362 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99850 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47052 * 89.99717 * 13 11 9 15 15 H 1.48495 * 109.47307 * 209.99656 * 13 11 9 16 16 H 1.48500 * 109.47143 * 330.00164 * 13 11 9 17 17 N 1.32989 * 118.93718 * 0.26019 * 5 4 3 18 18 C 1.31749 * 120.68691 * 359.48348 * 17 5 4 19 19 C 1.50703 * 119.08447 * 180.27016 * 18 17 5 20 20 N 1.31785 * 121.83172 * 0.53012 * 18 17 5 21 21 H 1.08999 * 109.46976 * 59.99984 * 1 2 3 22 22 H 1.08997 * 109.47111 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47247 * 299.99894 * 1 2 3 24 24 H 1.09007 * 109.47577 * 240.00016 * 2 1 3 25 25 H 1.09004 * 109.47633 * 119.99811 * 2 1 3 26 26 H 1.07996 * 120.83396 * 0.02562 * 4 3 2 27 27 H 0.96996 * 120.00446 * 179.97438 * 6 5 4 28 28 H 1.09002 * 109.47068 * 299.99753 * 7 6 5 29 29 H 1.09001 * 109.47372 * 59.99840 * 7 6 5 30 30 H 1.09002 * 109.47153 * 300.00008 * 8 7 6 31 31 H 1.08998 * 109.47533 * 59.99637 * 8 7 6 32 32 H 0.96994 * 119.99814 * 180.02562 * 12 11 9 33 33 H 1.09009 * 109.46745 * 270.25508 * 19 18 17 34 34 H 1.09000 * 109.47209 * 30.24960 * 19 18 17 35 35 H 1.08991 * 109.47379 * 150.25802 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9095 1.8520 0.9759 5 6 3.3470 3.1773 0.9349 6 7 4.2265 3.6580 1.8913 7 6 4.7054 2.7736 2.9565 8 6 5.6577 3.5462 3.8713 9 6 6.1499 2.6366 4.9674 10 1 5.8170 1.6100 5.0073 11 6 7.0259 3.1147 5.9188 12 7 7.4557 2.3208 6.8751 13 14 7.6033 4.8899 5.8486 14 1 6.6751 5.7437 6.6327 15 1 8.9699 4.9890 6.4210 16 1 7.6236 5.3483 4.4363 17 7 2.9015 3.9723 -0.0337 18 6 2.0687 3.5171 -0.9474 19 6 1.5914 4.4479 -2.0323 20 7 1.6373 2.2719 -0.9362 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.2484 1.1809 1.7512 27 1 4.5258 4.5800 1.8553 28 1 3.8569 2.4117 3.5372 29 1 5.2321 1.9268 2.5164 30 1 6.5062 3.9077 3.2904 31 1 5.1315 4.3932 4.3115 32 1 8.0717 2.6573 7.5445 33 1 0.6826 4.9526 -1.7042 34 1 2.3632 5.1888 -2.2410 35 1 1.3830 3.8757 -2.9363 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273280711.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:38 Heat of formation + Delta-G solvation = 7.193373 kcal Electronic energy + Delta-G solvation = -15838.589811 eV Core-core repulsion = 13256.022100 eV Total energy + Delta-G solvation = -2582.567711 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.96028 -38.07397 -36.08151 -35.23085 -33.49108 -32.08741 -31.19326 -29.26824 -26.81850 -25.54624 -23.44452 -22.32452 -22.21788 -19.14567 -18.99091 -17.53203 -16.54393 -16.28460 -16.22010 -15.75521 -15.66982 -15.46409 -14.87968 -14.63932 -14.27014 -13.77662 -13.44192 -13.41970 -13.18096 -12.98495 -12.41401 -12.39448 -12.12777 -12.08335 -11.84478 -11.66808 -11.58346 -11.47032 -10.81177 -10.52192 -10.15079 -9.11185 -8.32966 -6.39100 0.10364 0.40523 1.36087 1.37825 1.48287 2.02074 2.33098 2.87282 3.02600 3.13984 3.36183 3.76456 4.13193 4.20993 4.28921 4.37073 4.40324 4.50057 4.62126 4.70252 4.72947 4.77719 4.90273 5.02505 5.08578 5.12922 5.19136 5.34288 5.37360 5.44278 5.56832 5.81610 6.17941 6.30502 6.59565 6.70489 7.25865 7.34933 8.83001 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.033531 B = 0.004979 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.844293 B = 5622.610890 C = 6374.659637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.073 4.073 3 C 0.201 3.799 4 C -0.313 4.313 5 C 0.428 3.572 6 N -0.705 5.705 7 C 0.151 3.849 8 C -0.016 4.016 9 C -0.533 4.533 10 H 0.042 0.958 11 C 0.011 3.989 12 N -0.945 5.945 13 Si 0.949 3.051 14 H -0.267 1.267 15 H -0.285 1.285 16 H -0.246 1.246 17 N -0.606 5.606 18 C 0.343 3.657 19 C -0.077 4.077 20 N -0.573 5.573 21 H 0.058 0.942 22 H 0.081 0.919 23 H 0.042 0.958 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.145 0.855 27 H 0.407 0.593 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.029 0.971 31 H 0.028 0.972 32 H 0.268 0.732 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.140 0.889 -16.123 20.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 C 0.059 3.941 4 C -0.341 4.341 5 C 0.184 3.816 6 N -0.335 5.335 7 C 0.027 3.973 8 C -0.054 4.054 9 C -0.572 4.572 10 H 0.060 0.940 11 C -0.187 4.187 12 N -0.585 5.585 13 Si 0.772 3.228 14 H -0.192 1.192 15 H -0.211 1.211 16 H -0.170 1.170 17 N -0.333 5.333 18 C 0.074 3.926 19 C -0.135 4.135 20 N -0.294 5.294 21 H 0.077 0.923 22 H 0.100 0.900 23 H 0.061 0.939 24 H 0.116 0.884 25 H 0.111 0.889 26 H 0.163 0.837 27 H 0.243 0.757 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.256 1.316 -16.477 20.577 hybrid contribution 1.131 0.336 1.390 1.823 sum -11.126 1.652 -15.086 18.818 Atomic orbital electron populations 1.21599 0.93040 1.02873 1.01810 1.20636 0.97743 0.88133 1.04556 1.21847 0.88160 0.97049 0.87060 1.22179 1.08575 0.96774 1.06613 1.18830 0.86523 0.89490 0.86777 1.44811 1.46569 1.15185 1.26944 1.21281 0.96960 0.92551 0.86482 1.19638 0.95212 0.96260 0.94264 1.21181 1.27316 0.98184 1.10471 0.93982 1.25915 0.95793 1.02512 0.94467 1.70038 1.34172 1.38327 1.16006 0.85686 0.77716 0.79490 0.79907 1.19241 1.21078 1.16966 1.67810 1.19436 1.39042 1.06968 1.23651 0.86761 0.90034 0.92126 1.20623 1.02400 0.96651 0.93818 1.68115 1.29601 1.04176 1.27554 0.92270 0.90031 0.93862 0.88430 0.88920 0.83685 0.75668 0.92170 0.92155 0.95240 0.95380 0.92300 0.88548 0.89303 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.78 71.98 0.70 -1.71 16 2 C -0.07 -1.46 6.36 29.85 0.19 -1.27 16 3 C 0.20 5.56 6.20 42.42 0.26 5.83 16 4 C -0.31 -9.66 9.02 22.58 0.20 -9.45 16 5 C 0.43 14.35 7.71 133.17 1.03 15.38 16 6 N -0.70 -23.65 5.71 -344.58 -1.97 -25.62 16 7 C 0.15 5.59 4.87 86.38 0.42 6.01 16 8 C -0.02 -0.69 4.16 29.85 0.12 -0.57 16 9 C -0.53 -29.12 9.66 25.60 0.25 -28.87 16 10 H 0.04 2.51 7.99 -2.91 -0.02 2.48 16 11 C 0.01 0.62 5.47 84.65 0.46 1.08 16 12 N -0.95 -57.43 13.96 21.45 0.30 -57.13 16 13 Si 0.95 42.50 27.47 68.60 1.88 44.39 16 14 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 15 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 16 H -0.25 -10.16 6.54 99.48 0.65 -9.51 16 17 N -0.61 -19.68 10.37 -185.44 -1.92 -21.60 16 18 C 0.34 9.79 7.64 138.77 1.06 10.86 16 19 C -0.08 -1.46 10.32 71.24 0.73 -0.72 16 20 N -0.57 -16.39 9.93 -176.28 -1.75 -18.14 16 21 H 0.06 1.14 7.98 -2.39 -0.02 1.12 16 22 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 25 H 0.09 1.64 7.93 -2.38 -0.02 1.63 16 26 H 0.15 4.24 6.81 -2.91 -0.02 4.22 16 27 H 0.41 12.95 8.60 -92.71 -0.80 12.15 16 28 H 0.06 2.24 7.97 -2.39 -0.02 2.22 16 29 H 0.06 2.25 7.97 -2.39 -0.02 2.23 16 30 H 0.03 1.26 7.20 -2.39 -0.02 1.24 16 31 H 0.03 1.18 7.57 -2.39 -0.02 1.17 16 32 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 33 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -65.00 296.56 2.21 -62.80 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.23 Total: 18.75 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 5.44 Total: -3.44 kcal Atomic # 7 Polarization: -117.15 SS G_CDS: -5.34 Total: -122.49 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.88 Total: 44.39 kcal Total: -65.00 2.21 -62.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273280711.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.990 kcal (2) G-P(sol) polarization free energy of solvation -65.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds