Wall clock time and date at job start Sun Mar 29 2020 22:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31853 * 1 3 3 N 1.39530 * 119.99807 * 2 1 4 4 C 1.35822 * 126.10171 * 180.27778 * 3 2 1 5 5 C 1.35326 * 107.61706 * 180.02562 * 4 3 2 6 6 C 1.50699 * 126.01722 * 179.97438 * 5 4 3 7 7 N 1.46892 * 109.47607 * 89.99592 * 6 5 4 8 8 C 1.46905 * 110.99958 * 293.95512 * 7 6 5 9 9 C 1.52999 * 109.46808 * 164.08220 * 8 7 6 10 10 C 1.46901 * 111.00491 * 170.00113 * 7 6 5 11 11 C 1.50698 * 109.46975 * 284.31618 * 10 7 6 12 12 H 1.08004 * 120.00016 * 4.65373 * 11 10 7 13 13 C 1.37879 * 120.00176 * 184.65628 * 11 10 7 14 14 N 1.31516 * 119.99752 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00281 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47083 * 89.99599 * 15 13 11 17 17 H 1.48500 * 109.47133 * 209.99861 * 15 13 11 18 18 H 1.48506 * 109.47064 * 330.00038 * 15 13 11 19 19 C 1.39916 * 107.96976 * 359.97438 * 5 4 3 20 20 N 1.30870 * 108.36381 * 359.72074 * 19 5 4 21 21 H 1.08007 * 119.99561 * 179.72717 * 1 2 3 22 22 H 1.07997 * 120.00437 * 359.72318 * 1 2 3 23 23 H 1.07997 * 120.00437 * 180.27682 * 2 1 3 24 24 H 1.08001 * 126.19453 * 0.02562 * 4 3 2 25 25 H 1.09002 * 109.46664 * 209.99908 * 6 5 4 26 26 H 1.09001 * 109.47014 * 329.99411 * 6 5 4 27 27 H 1.09000 * 109.47087 * 284.08220 * 8 7 6 28 28 H 1.09000 * 109.46938 * 44.08501 * 8 7 6 29 29 H 1.08994 * 109.47367 * 59.47240 * 9 8 7 30 30 H 1.09004 * 109.47028 * 179.46840 * 9 8 7 31 31 H 1.09000 * 109.47449 * 299.46786 * 9 8 7 32 32 H 1.09003 * 109.46716 * 44.31067 * 10 7 6 33 33 H 1.08995 * 109.47523 * 164.31612 * 10 7 6 34 34 H 0.96998 * 119.99947 * 179.97438 * 14 13 11 35 35 H 1.07999 * 125.82378 * 180.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3185 0.0000 0.0000 3 7 2.0161 1.2084 0.0000 4 6 3.3667 1.3528 -0.0053 5 6 3.6368 2.6788 -0.0027 6 6 5.0080 3.3039 -0.0061 7 7 5.4484 3.5108 -1.3921 8 6 5.6477 2.2272 -2.0784 9 6 5.7129 2.4613 -3.5889 10 6 6.6679 4.3285 -1.4407 11 6 6.3163 5.7706 -1.1803 12 1 5.3029 6.0414 -0.9230 13 6 7.2883 6.7443 -1.2706 14 7 8.5224 6.4144 -1.5835 15 14 6.8524 8.5319 -0.9486 16 1 7.0349 8.8338 0.4938 17 1 7.7382 9.4103 -1.7542 18 1 5.4374 8.7727 -1.3295 19 6 2.4188 3.3675 0.0039 20 7 1.4486 2.4892 -0.0009 21 1 -0.5400 -0.9354 -0.0045 22 1 -0.5401 0.9352 0.0045 23 1 1.8586 -0.9352 -0.0045 24 1 4.0935 0.5540 -0.0107 25 1 4.9714 4.2630 0.5105 26 1 5.7097 2.6434 0.5033 27 1 6.5801 1.7753 -1.7401 28 1 4.8166 1.5601 -1.8496 29 1 6.5381 3.1359 -3.8168 30 1 5.8702 1.5102 -4.0976 31 1 4.7769 2.9046 -3.9287 32 1 7.3679 3.9822 -0.6803 33 1 7.1268 4.2385 -2.4252 34 1 9.2061 7.0995 -1.6474 35 1 2.2996 4.4408 0.0069 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278159890.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:09 Heat of formation + Delta-G solvation = 105.552042 kcal Electronic energy + Delta-G solvation = -16297.418643 eV Core-core repulsion = 13719.116084 eV Total energy + Delta-G solvation = -2578.302559 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.16714 -36.93503 -34.72025 -32.60155 -31.00282 -30.37039 -29.30310 -26.63339 -24.40494 -22.95485 -22.48695 -20.40876 -20.03349 -18.91268 -17.22238 -16.40621 -15.13950 -14.83606 -14.49438 -14.39520 -14.00732 -13.69922 -13.53082 -12.84806 -12.63326 -12.21122 -12.06976 -11.60604 -11.36047 -11.13630 -10.88664 -10.82471 -10.73135 -10.52791 -10.26728 -10.22977 -9.64358 -9.22012 -8.91866 -8.38170 -7.96790 -7.16235 -5.98123 -3.98759 1.30974 2.64119 2.77959 3.03032 3.34982 3.41407 3.46020 4.47068 4.54669 4.89612 5.07281 5.15505 5.38249 5.54931 5.58734 5.68754 5.74901 5.91328 6.04539 6.10621 6.17346 6.26080 6.35817 6.46454 6.56101 6.67323 6.86266 6.89837 7.28602 7.36176 7.38602 7.84705 7.87757 8.17902 8.28246 8.60491 9.09080 9.65212 11.12512 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.033498 B = 0.005826 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.680736 B = 4804.944959 C = 5353.739931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.081 3.919 3 N -0.339 5.339 4 C 0.040 3.960 5 C -0.191 4.191 6 C 0.133 3.867 7 N -0.531 5.531 8 C 0.050 3.950 9 C -0.142 4.142 10 C 0.191 3.809 11 C -0.502 4.502 12 H 0.063 0.937 13 C 0.054 3.946 14 N -0.901 5.901 15 Si 0.896 3.104 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.273 1.273 19 C 0.079 3.921 20 N -0.302 5.302 21 H 0.119 0.881 22 H 0.113 0.887 23 H 0.153 0.847 24 H 0.171 0.829 25 H 0.091 0.909 26 H 0.026 0.974 27 H 0.019 0.981 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.042 0.958 31 H 0.055 0.945 32 H -0.012 1.012 33 H 0.037 0.963 34 H 0.260 0.740 35 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.044 -12.317 2.669 16.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.029 4.029 3 N -0.117 5.117 4 C -0.101 4.101 5 C -0.202 4.202 6 C 0.004 3.996 7 N -0.255 5.255 8 C -0.079 4.079 9 C -0.200 4.200 10 C 0.066 3.934 11 C -0.540 4.540 12 H 0.082 0.918 13 C -0.147 4.147 14 N -0.541 5.541 15 Si 0.724 3.276 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.198 1.198 19 C -0.109 4.109 20 N -0.122 5.122 21 H 0.137 0.863 22 H 0.131 0.869 23 H 0.170 0.830 24 H 0.189 0.811 25 H 0.109 0.891 26 H 0.044 0.956 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.006 0.994 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -11.495 -12.242 2.382 16.961 hybrid contribution 1.478 0.582 0.491 1.663 sum -10.016 -11.660 2.874 15.638 Atomic orbital electron populations 1.23925 0.94536 1.03541 1.03652 1.21165 0.93856 0.85323 1.02603 1.46049 1.04306 1.04771 1.56616 1.22545 0.85026 0.98655 1.03876 1.20402 0.97232 0.91641 1.10925 1.20311 0.88518 0.99614 0.91140 1.62142 1.36528 1.13794 1.13084 1.22007 0.98250 0.92498 0.95106 1.21729 1.02673 1.00184 0.95401 1.19795 0.84781 0.91957 0.96892 1.21182 0.95574 0.91242 1.46039 0.91850 1.24980 0.94966 0.99107 0.95597 1.69956 1.01431 1.33510 1.49192 0.86533 0.78380 0.84696 0.78024 1.20802 1.21389 1.19758 1.23999 0.89861 0.99936 0.97064 1.77343 1.22528 0.87028 1.25256 0.86299 0.86892 0.82998 0.81149 0.89059 0.95603 0.96310 0.92453 0.92018 0.93918 0.92576 0.99415 0.94520 0.93024 0.79490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.14 14.35 28.83 0.41 -1.72 16 2 C 0.08 0.87 10.78 -15.94 -0.17 0.70 16 3 N -0.34 -4.86 3.80 -12.74 -0.05 -4.91 16 4 C 0.04 0.57 9.71 -16.82 -0.16 0.41 16 5 C -0.19 -3.14 5.04 -105.03 -0.53 -3.67 16 6 C 0.13 2.49 5.27 -4.98 -0.03 2.46 16 7 N -0.53 -11.23 4.37 -237.52 -1.04 -12.27 16 8 C 0.05 0.91 5.55 -3.82 -0.02 0.89 16 9 C -0.14 -2.49 9.98 37.16 0.37 -2.12 16 10 C 0.19 4.86 4.59 -4.98 -0.02 4.84 16 11 C -0.50 -13.86 8.61 -34.44 -0.30 -14.15 16 12 H 0.06 1.73 7.66 -52.48 -0.40 1.33 16 13 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 14 N -0.90 -26.58 13.29 55.43 0.74 -25.85 16 15 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 C 0.08 1.29 11.95 -17.33 -0.21 1.08 16 20 N -0.30 -4.95 11.73 30.64 0.36 -4.59 16 21 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 22 H 0.11 1.34 7.54 -52.49 -0.40 0.94 16 23 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 24 H 0.17 1.90 7.95 -52.49 -0.42 1.48 16 25 H 0.09 1.83 7.32 -51.93 -0.38 1.45 16 26 H 0.03 0.47 8.12 -51.93 -0.42 0.04 16 27 H 0.02 0.34 8.05 -51.93 -0.42 -0.08 16 28 H 0.06 0.93 5.51 -51.93 -0.29 0.65 16 29 H 0.06 1.20 6.52 -51.93 -0.34 0.86 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H -0.01 -0.32 8.00 -51.93 -0.42 -0.74 16 33 H 0.04 1.00 6.24 -51.93 -0.32 0.68 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.19 2.77 8.06 -52.49 -0.42 2.35 16 LS Contribution 297.01 15.07 4.48 4.48 Total: -1.00 -31.26 297.01 -6.33 -37.59 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -5.05 Total: -1.09 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -0.75 Total: -9.86 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: 0.01 Total: -47.62 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.26 -6.33 -37.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278159890.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.143 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds