Wall clock time and date at job start Sun Mar 29 2020 22:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31853 * 1 3 3 N 1.39530 * 119.99807 * 2 1 4 4 C 1.35822 * 126.10171 * 180.27778 * 3 2 1 5 5 C 1.35326 * 107.61706 * 180.02562 * 4 3 2 6 6 C 1.50699 * 126.01722 * 179.97438 * 5 4 3 7 7 N 1.46892 * 109.47607 * 89.99592 * 6 5 4 8 8 C 1.46905 * 110.99958 * 293.95512 * 7 6 5 9 9 C 1.52999 * 109.46808 * 164.08220 * 8 7 6 10 10 C 1.46901 * 111.00491 * 170.00113 * 7 6 5 11 11 C 1.50698 * 109.46975 * 284.31618 * 10 7 6 12 12 H 1.08004 * 120.00016 * 4.65373 * 11 10 7 13 13 C 1.37879 * 120.00176 * 184.65628 * 11 10 7 14 14 N 1.31516 * 119.99752 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00281 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47083 * 89.99599 * 15 13 11 17 17 H 1.48500 * 109.47133 * 209.99861 * 15 13 11 18 18 H 1.48506 * 109.47064 * 330.00038 * 15 13 11 19 19 C 1.39916 * 107.96976 * 359.97438 * 5 4 3 20 20 N 1.30870 * 108.36381 * 359.72074 * 19 5 4 21 21 H 1.08007 * 119.99561 * 179.72717 * 1 2 3 22 22 H 1.07997 * 120.00437 * 359.72318 * 1 2 3 23 23 H 1.07997 * 120.00437 * 180.27682 * 2 1 3 24 24 H 1.08001 * 126.19453 * 0.02562 * 4 3 2 25 25 H 1.09002 * 109.46664 * 209.99908 * 6 5 4 26 26 H 1.09001 * 109.47014 * 329.99411 * 6 5 4 27 27 H 1.09000 * 109.47087 * 284.08220 * 8 7 6 28 28 H 1.09000 * 109.46938 * 44.08501 * 8 7 6 29 29 H 1.08994 * 109.47367 * 59.47240 * 9 8 7 30 30 H 1.09004 * 109.47028 * 179.46840 * 9 8 7 31 31 H 1.09000 * 109.47449 * 299.46786 * 9 8 7 32 32 H 1.09003 * 109.46716 * 44.31067 * 10 7 6 33 33 H 1.08995 * 109.47523 * 164.31612 * 10 7 6 34 34 H 0.96998 * 119.99947 * 179.97438 * 14 13 11 35 35 H 1.07999 * 125.82378 * 180.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3185 0.0000 0.0000 3 7 2.0161 1.2084 0.0000 4 6 3.3667 1.3528 -0.0053 5 6 3.6368 2.6788 -0.0027 6 6 5.0080 3.3039 -0.0061 7 7 5.4484 3.5108 -1.3921 8 6 5.6477 2.2272 -2.0784 9 6 5.7129 2.4613 -3.5889 10 6 6.6679 4.3285 -1.4407 11 6 6.3163 5.7706 -1.1803 12 1 5.3029 6.0414 -0.9230 13 6 7.2883 6.7443 -1.2706 14 7 8.5224 6.4144 -1.5835 15 14 6.8524 8.5319 -0.9486 16 1 7.0349 8.8338 0.4938 17 1 7.7382 9.4103 -1.7542 18 1 5.4374 8.7727 -1.3295 19 6 2.4188 3.3675 0.0039 20 7 1.4486 2.4892 -0.0009 21 1 -0.5400 -0.9354 -0.0045 22 1 -0.5401 0.9352 0.0045 23 1 1.8586 -0.9352 -0.0045 24 1 4.0935 0.5540 -0.0107 25 1 4.9714 4.2630 0.5105 26 1 5.7097 2.6434 0.5033 27 1 6.5801 1.7753 -1.7401 28 1 4.8166 1.5601 -1.8496 29 1 6.5381 3.1359 -3.8168 30 1 5.8702 1.5102 -4.0976 31 1 4.7769 2.9046 -3.9287 32 1 7.3679 3.9822 -0.6803 33 1 7.1268 4.2385 -2.4252 34 1 9.2061 7.0995 -1.6474 35 1 2.2996 4.4408 0.0069 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278159890.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:08 Heat of formation + Delta-G solvation = 85.601485 kcal Electronic energy + Delta-G solvation = -16298.283764 eV Core-core repulsion = 13719.116084 eV Total energy + Delta-G solvation = -2579.167680 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.31361 -38.54363 -35.72403 -34.68723 -32.34380 -31.54677 -30.78624 -28.42961 -25.89469 -24.46981 -23.86877 -21.75877 -21.37896 -20.07761 -18.50733 -18.19429 -16.79579 -16.36713 -15.95408 -15.60309 -15.43543 -15.20656 -14.74778 -14.28942 -14.03570 -13.79881 -13.29466 -13.00707 -12.94854 -12.79073 -12.62338 -12.50202 -12.18548 -12.05033 -11.81140 -11.52230 -11.42525 -11.22285 -10.53619 -10.03825 -9.09112 -8.84355 -8.13534 -6.22296 0.32397 1.44257 1.45244 1.56766 1.65246 1.77134 1.85262 2.45354 3.18258 3.50152 3.66104 3.93501 4.17907 4.22538 4.30511 4.44246 4.57159 4.70803 4.75679 4.88156 4.93023 4.98932 5.09348 5.14001 5.24393 5.34070 5.36720 5.41832 5.43022 5.70429 5.74967 6.16900 6.39150 6.50345 6.69464 6.75295 6.93959 7.46862 8.96757 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.033498 B = 0.005826 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.680736 B = 4804.944959 C = 5353.739931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.055 3.945 3 N -0.337 5.337 4 C 0.061 3.939 5 C -0.218 4.218 6 C 0.142 3.858 7 N -0.540 5.540 8 C 0.050 3.950 9 C -0.137 4.137 10 C 0.206 3.794 11 C -0.515 4.515 12 H 0.061 0.939 13 C 0.002 3.998 14 N -0.936 5.936 15 Si 0.964 3.036 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.266 1.266 19 C 0.064 3.936 20 N -0.326 5.326 21 H 0.155 0.845 22 H 0.088 0.912 23 H 0.195 0.805 24 H 0.207 0.793 25 H 0.067 0.933 26 H 0.032 0.968 27 H 0.020 0.980 28 H 0.084 0.916 29 H 0.032 0.968 30 H 0.077 0.923 31 H 0.049 0.951 32 H -0.038 1.038 33 H 0.012 0.988 34 H 0.263 0.737 35 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.380 -14.053 2.879 18.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.053 4.053 3 N -0.115 5.115 4 C -0.082 4.082 5 C -0.229 4.229 6 C 0.013 3.987 7 N -0.265 5.265 8 C -0.078 4.078 9 C -0.195 4.195 10 C 0.080 3.920 11 C -0.554 4.554 12 H 0.079 0.921 13 C -0.195 4.195 14 N -0.577 5.577 15 Si 0.789 3.211 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.191 1.191 19 C -0.122 4.122 20 N -0.146 5.146 21 H 0.173 0.827 22 H 0.106 0.894 23 H 0.212 0.788 24 H 0.223 0.777 25 H 0.086 0.914 26 H 0.050 0.950 27 H 0.038 0.962 28 H 0.102 0.898 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.068 0.932 32 H -0.020 1.020 33 H 0.030 0.970 34 H 0.071 0.929 35 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -12.877 -14.000 2.599 19.198 hybrid contribution 1.782 0.974 0.432 2.077 sum -11.094 -13.026 3.031 17.377 Atomic orbital electron populations 1.24201 0.94550 1.04126 1.01385 1.21938 0.94507 0.85227 1.03643 1.46370 1.04620 1.05139 1.55378 1.22950 0.85578 0.98484 1.01162 1.20137 0.95727 0.92852 1.14209 1.20115 0.90203 0.98883 0.89471 1.62070 1.33975 1.15409 1.15065 1.22103 0.99334 0.91368 0.95025 1.21695 1.01083 1.01293 0.95438 1.19423 0.85967 0.92131 0.94440 1.21497 0.95511 0.92585 1.45785 0.92058 1.25839 0.94785 1.03628 0.95278 1.70079 1.02452 1.34976 1.50210 0.85464 0.78277 0.79183 0.78186 1.19867 1.21016 1.19078 1.24087 0.90134 1.00354 0.97651 1.77289 1.22990 0.88153 1.26193 0.82695 0.89355 0.78784 0.77659 0.91425 0.94957 0.96158 0.89805 0.94890 0.90447 0.93216 1.02032 0.96978 0.92872 0.79445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.37 14.35 67.01 0.96 -2.41 16 2 C 0.06 0.98 10.78 82.66 0.89 1.87 16 3 N -0.34 -8.81 3.80 -194.21 -0.74 -9.55 16 4 C 0.06 1.56 9.71 83.40 0.81 2.37 16 5 C -0.22 -6.99 5.04 -20.13 -0.10 -7.09 16 6 C 0.14 5.35 5.27 85.56 0.45 5.80 16 7 N -0.54 -23.14 4.37 -905.38 -3.96 -27.10 16 8 C 0.05 1.75 5.55 86.30 0.48 2.23 16 9 C -0.14 -4.71 9.98 71.98 0.72 -3.99 16 10 C 0.21 10.92 4.59 85.56 0.39 11.31 16 11 C -0.52 -29.21 8.61 25.60 0.22 -28.99 16 12 H 0.06 3.42 7.66 -2.91 -0.02 3.40 16 13 C 0.00 0.13 5.46 84.65 0.46 0.59 16 14 N -0.94 -56.46 13.29 21.45 0.28 -56.18 16 15 Si 0.96 44.65 29.54 68.60 2.03 46.68 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 19 C 0.06 2.10 11.95 85.24 1.02 3.12 16 20 N -0.33 -10.41 11.73 -56.98 -0.67 -11.08 16 21 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 22 H 0.09 1.95 7.54 -2.91 -0.02 1.93 16 23 H 0.20 1.72 8.06 -2.91 -0.02 1.70 16 24 H 0.21 3.65 7.95 -2.91 -0.02 3.62 16 25 H 0.07 2.82 7.32 -2.39 -0.02 2.80 16 26 H 0.03 1.16 8.12 -2.39 -0.02 1.14 16 27 H 0.02 0.71 8.05 -2.39 -0.02 0.69 16 28 H 0.08 2.50 5.51 -2.39 -0.01 2.49 16 29 H 0.03 1.30 6.52 -2.39 -0.02 1.28 16 30 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H -0.04 -2.16 8.00 -2.39 -0.02 -2.18 16 33 H 0.01 0.70 6.24 -2.39 -0.01 0.68 16 34 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 35 H 0.19 5.78 8.06 -2.91 -0.02 5.75 16 Total: -1.00 -69.06 297.01 4.31 -64.76 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 1.05 Total: 7.67 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: 6.30 Total: -15.20 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -5.08 Total: -103.91 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -69.06 4.31 -64.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278159890.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.359 kcal (2) G-P(sol) polarization free energy of solvation -69.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds