Wall clock time and date at job start Sun Mar 29 2020 21:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47239 * 2 1 4 4 N 1.31790 * 119.08880 * 89.99781 * 3 2 1 5 5 C 1.32549 * 121.01510 * 179.97438 * 4 3 2 6 6 C 1.50701 * 120.40167 * 179.97438 * 5 4 3 7 7 C 1.38121 * 119.19282 * 0.02562 * 5 4 3 8 8 C 1.39615 * 118.34037 * 359.97438 * 7 5 4 9 9 N 1.38541 * 120.53708 * 180.02562 * 8 7 5 10 10 C 1.46497 * 120.00630 * 185.00141 * 9 8 7 11 11 C 1.46508 * 119.99673 * 4.99814 * 9 8 7 12 12 C 1.50704 * 109.46916 * 90.00196 * 11 9 8 13 13 H 1.07999 * 119.99702 * 359.97438 * 12 11 9 14 14 C 1.37869 * 119.99706 * 180.02562 * 12 11 9 15 15 N 1.31515 * 120.00148 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00215 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47019 * 90.00018 * 16 14 12 18 18 H 1.48506 * 109.46955 * 210.00081 * 16 14 12 19 19 H 1.48498 * 109.47256 * 329.99834 * 16 14 12 20 20 N 1.31751 * 119.08189 * 269.73328 * 3 2 1 21 21 H 1.09001 * 109.47002 * 60.00070 * 1 2 3 22 22 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47050 * 300.00336 * 1 2 3 24 24 H 1.09001 * 109.46998 * 119.99373 * 2 1 3 25 25 H 1.09000 * 109.47050 * 239.99664 * 2 1 3 26 26 H 1.08998 * 109.46994 * 90.00170 * 6 5 4 27 27 H 1.08997 * 109.46579 * 210.00016 * 6 5 4 28 28 H 1.09002 * 109.46959 * 329.99900 * 6 5 4 29 29 H 1.08004 * 120.82546 * 179.97438 * 7 5 4 30 30 H 1.08996 * 109.47260 * 89.99771 * 10 9 8 31 31 H 1.08997 * 109.47437 * 210.00024 * 10 9 8 32 32 H 1.09010 * 109.46720 * 330.00029 * 10 9 8 33 33 H 1.08997 * 109.46929 * 210.00185 * 11 9 8 34 34 H 1.08999 * 109.46571 * 330.00371 * 11 9 8 35 35 H 0.96995 * 120.00759 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2460 2.0249 1.1517 5 6 2.6880 3.2737 1.1962 6 6 2.9270 3.9513 2.5209 7 6 2.9260 3.9466 0.0138 8 6 2.6896 3.2778 -1.1887 9 7 2.9135 3.9093 -2.4013 10 6 2.5586 3.2373 -3.6538 11 6 3.5051 5.2492 -2.4311 12 6 5.0061 5.1341 -2.5008 13 1 5.4727 4.1603 -2.5205 14 6 5.7837 6.2720 -2.5384 15 7 7.0936 6.1717 -2.5987 16 14 4.9768 7.9564 -2.5021 17 1 4.8286 8.4040 -1.0940 18 1 5.8222 8.9263 -3.2436 19 1 3.6381 7.8778 -3.1400 20 7 2.2509 2.0227 -1.1514 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5137 0.8901 25 1 1.8934 -0.5139 -0.8900 26 1 3.9533 3.7717 2.8410 27 1 2.7615 5.0235 2.4155 28 1 2.2388 3.5488 3.2643 29 1 3.2861 4.9649 0.0193 30 1 1.5318 3.4862 -3.9213 31 1 3.2306 3.5670 -4.4461 32 1 2.6495 2.1586 -3.5257 33 1 3.1409 5.7878 -3.3059 34 1 3.2238 5.7907 -1.5279 35 1 7.6407 6.9722 -2.6256 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287151282.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:07 Heat of formation + Delta-G solvation = 43.206100 kcal Electronic energy + Delta-G solvation = -16533.288316 eV Core-core repulsion = 13952.282234 eV Total energy + Delta-G solvation = -2581.006082 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.42601 -36.70267 -34.37756 -33.07289 -32.15365 -30.36314 -28.81176 -27.88995 -25.24256 -24.56088 -22.75783 -20.98130 -20.05614 -17.17512 -17.05535 -16.29562 -14.96149 -14.74781 -14.43183 -14.16018 -13.90878 -13.70392 -13.26114 -12.97992 -12.64838 -12.48162 -12.13234 -11.93463 -11.73744 -11.59083 -11.42057 -11.06533 -10.91288 -10.72383 -10.48795 -9.99891 -9.95066 -9.58854 -8.94634 -8.75156 -8.58935 -7.07824 -6.23746 -4.25614 1.65270 2.02261 3.14882 3.22623 3.23403 3.61958 4.23517 4.39479 4.43854 4.74286 5.06463 5.25601 5.36443 5.45309 5.50485 5.70747 5.79012 5.84537 5.92197 5.96071 6.00541 6.06801 6.14572 6.18548 6.29175 6.34299 6.38111 6.59696 6.62526 6.99140 7.36140 7.41554 8.02168 8.04545 8.36667 8.81498 8.91757 9.34406 10.89173 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.029624 B = 0.007187 C = 0.006349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.958554 B = 3894.799379 C = 4408.749497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.049 4.049 3 C 0.353 3.647 4 N -0.576 5.576 5 C 0.188 3.812 6 C -0.099 4.099 7 C -0.283 4.283 8 C 0.450 3.550 9 N -0.575 5.575 10 C 0.100 3.900 11 C 0.220 3.780 12 C -0.540 4.540 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.891 5.891 16 Si 0.872 3.128 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.265 1.265 20 N -0.589 5.589 21 H 0.056 0.944 22 H 0.060 0.940 23 H 0.056 0.944 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.144 0.856 30 H 0.039 0.961 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.037 0.963 34 H 0.030 0.970 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.138 -5.716 4.869 13.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.089 4.089 3 C 0.083 3.917 4 N -0.298 5.298 5 C 0.048 3.952 6 C -0.156 4.156 7 C -0.312 4.312 8 C 0.206 3.794 9 N -0.283 5.283 10 C -0.043 4.043 11 C 0.100 3.900 12 C -0.579 4.579 13 H 0.095 0.905 14 C -0.128 4.128 15 N -0.528 5.528 16 Si 0.699 3.301 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.189 1.189 20 N -0.316 5.316 21 H 0.075 0.925 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.161 0.839 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.211 -6.335 4.635 13.686 hybrid contribution 0.289 1.928 -0.173 1.958 sum -10.923 -4.407 4.462 12.595 Atomic orbital electron populations 1.21644 0.94199 1.01696 1.02233 1.20217 0.96235 0.88991 1.03418 1.22607 0.90002 0.96082 0.83028 1.67957 1.21245 1.10735 1.29888 1.21201 0.89524 0.89425 0.95081 1.20660 1.02832 0.99614 0.92519 1.22046 1.12910 1.04087 0.92127 1.18510 0.86494 0.87478 0.86918 1.46629 1.61806 1.17957 1.01909 1.21505 0.98719 0.98324 0.85779 1.19827 0.94521 0.78184 0.97517 1.21386 0.88817 0.95397 1.52299 0.90515 1.24870 0.94687 0.98950 0.94252 1.69888 1.03997 1.29564 1.49368 0.86911 0.79905 0.84372 0.78942 1.19753 1.20745 1.18930 1.67697 1.23643 1.09387 1.30840 0.92525 0.92074 0.92528 0.89756 0.89813 0.90210 0.90706 0.90711 0.83865 0.94230 0.91208 0.90993 0.94505 0.95176 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.90 37.16 0.37 -1.25 16 2 C -0.05 -0.67 6.37 -27.88 -0.18 -0.85 16 3 C 0.35 6.41 6.90 -157.24 -1.08 5.32 16 4 N -0.58 -10.65 10.27 -7.07 -0.07 -10.72 16 5 C 0.19 3.44 6.82 -82.33 -0.56 2.87 16 6 C -0.10 -1.37 10.22 36.01 0.37 -1.00 16 7 C -0.28 -5.77 9.01 -39.11 -0.35 -6.12 16 8 C 0.45 9.61 7.39 -154.78 -1.14 8.47 16 9 N -0.57 -12.33 2.96 -182.92 -0.54 -12.87 16 10 C 0.10 1.82 10.51 59.85 0.63 2.45 16 11 C 0.22 5.08 4.10 -5.19 -0.02 5.06 16 12 C -0.54 -14.78 9.94 -34.44 -0.34 -15.12 16 13 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 14 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 15 N -0.89 -26.38 13.96 55.43 0.77 -25.61 16 16 Si 0.87 20.04 27.47 -169.99 -4.67 15.38 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 20 N -0.59 -11.79 9.13 -9.97 -0.09 -11.88 16 21 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 25 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.14 2.92 6.16 -52.48 -0.32 2.60 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 32 H 0.07 1.28 7.33 -51.92 -0.38 0.90 16 33 H 0.04 0.83 7.13 -51.93 -0.37 0.46 16 34 H 0.03 0.68 5.47 -51.93 -0.28 0.40 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 LS Contribution 294.90 15.07 4.44 4.44 Total: -1.00 -30.91 294.90 -7.74 -38.65 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -5.17 Total: 0.80 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -2.42 Total: 1.82 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: 0.07 Total: -61.09 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.67 Total: 15.38 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.91 -7.74 -38.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287151282.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.854 kcal (2) G-P(sol) polarization free energy of solvation -30.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds