Wall clock time and date at job start Sun Mar 29 2020 21:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47239 * 2 1 4 4 N 1.31790 * 119.08880 * 89.99781 * 3 2 1 5 5 C 1.32549 * 121.01510 * 179.97438 * 4 3 2 6 6 C 1.50701 * 120.40167 * 179.97438 * 5 4 3 7 7 C 1.38121 * 119.19282 * 0.02562 * 5 4 3 8 8 C 1.39615 * 118.34037 * 359.97438 * 7 5 4 9 9 N 1.38541 * 120.53708 * 180.02562 * 8 7 5 10 10 C 1.46497 * 120.00630 * 185.00141 * 9 8 7 11 11 C 1.46508 * 119.99673 * 4.99814 * 9 8 7 12 12 C 1.50704 * 109.46916 * 90.00196 * 11 9 8 13 13 H 1.07999 * 119.99702 * 359.97438 * 12 11 9 14 14 C 1.37869 * 119.99706 * 180.02562 * 12 11 9 15 15 N 1.31515 * 120.00148 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00215 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47019 * 90.00018 * 16 14 12 18 18 H 1.48506 * 109.46955 * 210.00081 * 16 14 12 19 19 H 1.48498 * 109.47256 * 329.99834 * 16 14 12 20 20 N 1.31751 * 119.08189 * 269.73328 * 3 2 1 21 21 H 1.09001 * 109.47002 * 60.00070 * 1 2 3 22 22 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47050 * 300.00336 * 1 2 3 24 24 H 1.09001 * 109.46998 * 119.99373 * 2 1 3 25 25 H 1.09000 * 109.47050 * 239.99664 * 2 1 3 26 26 H 1.08998 * 109.46994 * 90.00170 * 6 5 4 27 27 H 1.08997 * 109.46579 * 210.00016 * 6 5 4 28 28 H 1.09002 * 109.46959 * 329.99900 * 6 5 4 29 29 H 1.08004 * 120.82546 * 179.97438 * 7 5 4 30 30 H 1.08996 * 109.47260 * 89.99771 * 10 9 8 31 31 H 1.08997 * 109.47437 * 210.00024 * 10 9 8 32 32 H 1.09010 * 109.46720 * 330.00029 * 10 9 8 33 33 H 1.08997 * 109.46929 * 210.00185 * 11 9 8 34 34 H 1.08999 * 109.46571 * 330.00371 * 11 9 8 35 35 H 0.96995 * 120.00759 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2460 2.0249 1.1517 5 6 2.6880 3.2737 1.1962 6 6 2.9270 3.9513 2.5209 7 6 2.9260 3.9466 0.0138 8 6 2.6896 3.2778 -1.1887 9 7 2.9135 3.9093 -2.4013 10 6 2.5586 3.2373 -3.6538 11 6 3.5051 5.2492 -2.4311 12 6 5.0061 5.1341 -2.5008 13 1 5.4727 4.1603 -2.5205 14 6 5.7837 6.2720 -2.5384 15 7 7.0936 6.1717 -2.5987 16 14 4.9768 7.9564 -2.5021 17 1 4.8286 8.4040 -1.0940 18 1 5.8222 8.9263 -3.2436 19 1 3.6381 7.8778 -3.1400 20 7 2.2509 2.0227 -1.1514 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5137 0.8901 25 1 1.8934 -0.5139 -0.8900 26 1 3.9533 3.7717 2.8410 27 1 2.7615 5.0235 2.4155 28 1 2.2388 3.5488 3.2643 29 1 3.2861 4.9649 0.0193 30 1 1.5318 3.4862 -3.9213 31 1 3.2306 3.5670 -4.4461 32 1 2.6495 2.1586 -3.5257 33 1 3.1409 5.7878 -3.3059 34 1 3.2238 5.7907 -1.5279 35 1 7.6407 6.9722 -2.6256 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287151282.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:07 Heat of formation + Delta-G solvation = 24.622632 kcal Electronic energy + Delta-G solvation = -16534.094156 eV Core-core repulsion = 13952.282234 eV Total energy + Delta-G solvation = -2581.811922 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.89314 -38.30053 -35.65668 -34.95736 -33.73353 -31.67854 -30.55979 -29.34404 -26.77624 -25.86261 -24.49624 -22.27648 -21.63720 -19.15816 -18.64275 -17.86348 -16.55423 -16.38459 -15.95189 -15.65525 -15.34745 -14.90818 -14.74976 -14.44692 -14.15027 -13.82514 -13.63779 -13.26035 -13.09665 -13.01683 -12.76269 -12.61812 -12.38337 -12.15003 -11.93024 -11.80469 -11.50239 -11.39524 -10.84884 -10.42878 -10.08585 -8.69877 -8.35992 -6.44909 0.19501 0.49508 1.36119 1.37215 1.47682 2.05137 2.29381 2.95301 2.97122 3.15545 3.38497 3.84818 4.23437 4.33585 4.37527 4.43302 4.45179 4.49572 4.59317 4.72623 4.76751 4.78287 4.87781 4.92171 4.95009 5.04009 5.12070 5.19397 5.34212 5.36430 5.58545 5.78477 6.16977 6.46038 6.53670 6.61798 7.19787 7.43030 8.80870 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.029624 B = 0.007187 C = 0.006349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.958554 B = 3894.799379 C = 4408.749497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.049 4.049 3 C 0.343 3.657 4 N -0.580 5.580 5 C 0.189 3.811 6 C -0.096 4.096 7 C -0.311 4.311 8 C 0.429 3.571 9 N -0.589 5.589 10 C 0.101 3.899 11 C 0.231 3.769 12 C -0.545 4.545 13 H 0.021 0.979 14 C 0.017 3.983 15 N -0.944 5.944 16 Si 0.948 3.052 17 H -0.260 1.260 18 H -0.281 1.281 19 H -0.239 1.239 20 N -0.600 5.600 21 H 0.045 0.955 22 H 0.091 0.909 23 H 0.051 0.949 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.138 0.862 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.041 0.959 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.226 -5.288 5.773 15.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.088 4.088 3 C 0.074 3.926 4 N -0.302 5.302 5 C 0.048 3.952 6 C -0.153 4.153 7 C -0.339 4.339 8 C 0.186 3.814 9 N -0.298 5.298 10 C -0.041 4.041 11 C 0.109 3.891 12 C -0.584 4.584 13 H 0.039 0.961 14 C -0.182 4.182 15 N -0.583 5.583 16 Si 0.770 3.230 17 H -0.184 1.184 18 H -0.206 1.206 19 H -0.162 1.162 20 N -0.327 5.327 21 H 0.064 0.936 22 H 0.110 0.890 23 H 0.070 0.930 24 H 0.117 0.883 25 H 0.108 0.892 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.111 0.889 29 H 0.155 0.845 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.330 -5.948 5.540 15.612 hybrid contribution 0.982 1.629 -0.404 1.944 sum -12.348 -4.319 5.135 14.053 Atomic orbital electron populations 1.21597 0.92381 1.03499 1.01424 1.20414 0.97628 0.86297 1.04447 1.23573 0.88817 0.97665 0.82548 1.68126 1.21405 1.10795 1.29898 1.21880 0.87731 0.89341 0.96245 1.20779 1.03717 1.00262 0.90543 1.22158 1.14660 1.04262 0.92827 1.18822 0.87110 0.88278 0.87212 1.46656 1.62351 1.17810 1.02987 1.21592 0.99965 0.98004 0.84567 1.19595 0.91499 0.79632 0.98396 1.21518 0.91437 0.93167 1.52232 0.96098 1.25863 0.95055 1.03839 0.93407 1.70058 1.06083 1.31121 1.51032 0.85714 0.79728 0.77852 0.79739 1.18433 1.20642 1.16250 1.67775 1.24159 1.08936 1.31812 0.93609 0.88974 0.92992 0.88279 0.89173 0.89388 0.89173 0.88857 0.84471 0.91723 0.91617 0.91175 0.93055 0.94089 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.90 71.98 0.71 -2.01 16 2 C -0.05 -1.24 6.37 29.85 0.19 -1.05 16 3 C 0.34 12.14 6.90 138.76 0.96 13.09 16 4 N -0.58 -20.74 10.27 -176.28 -1.81 -22.55 16 5 C 0.19 6.73 6.82 42.42 0.29 7.01 16 6 C -0.10 -2.46 10.22 71.24 0.73 -1.74 16 7 C -0.31 -12.65 9.01 22.57 0.20 -12.44 16 8 C 0.43 18.41 7.39 133.16 0.98 19.39 16 9 N -0.59 -25.34 2.96 -732.64 -2.17 -27.51 16 10 C 0.10 3.65 10.51 127.77 1.34 5.00 16 11 C 0.23 10.54 4.10 85.63 0.35 10.89 16 12 C -0.54 -30.63 9.94 25.60 0.25 -30.38 16 13 H 0.02 1.36 8.06 -2.91 -0.02 1.34 16 14 C 0.02 0.96 5.47 84.65 0.46 1.42 16 15 N -0.94 -57.53 13.96 21.44 0.30 -57.23 16 16 Si 0.95 40.75 27.47 68.60 1.88 42.64 16 17 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 18 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.24 -9.26 6.54 99.48 0.65 -8.60 16 20 N -0.60 -23.90 9.13 -185.45 -1.69 -25.59 16 21 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.09 2.04 8.09 -2.39 -0.02 2.02 16 28 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.14 5.61 6.16 -2.91 -0.02 5.59 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 2.37 8.07 -2.39 -0.02 2.35 16 32 H 0.07 2.51 7.33 -2.38 -0.02 2.50 16 33 H 0.05 2.20 7.13 -2.39 -0.02 2.19 16 34 H 0.04 1.80 5.47 -2.39 -0.01 1.78 16 35 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -68.61 294.90 4.00 -64.61 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 1.01 Total: 16.44 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 6.47 Total: 9.19 kcal Atomic # 7 Polarization: -127.51 SS G_CDS: -5.37 Total: -132.88 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 1.88 Total: 42.64 kcal Total: -68.61 4.00 -64.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287151282.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.234 kcal (2) G-P(sol) polarization free energy of solvation -68.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds