Wall clock time and date at job start Sun Mar 29 2020 21:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47371 * 2 1 4 4 N 1.31783 * 119.08696 * 269.98361 * 3 2 1 5 5 C 1.32548 * 121.01157 * 179.97438 * 4 3 2 6 6 C 1.50701 * 120.40041 * 179.97438 * 5 4 3 7 7 C 1.38116 * 119.19786 * 359.97438 * 5 4 3 8 8 C 1.39622 * 118.33616 * 0.02562 * 7 5 4 9 9 N 1.38541 * 120.53405 * 180.25015 * 8 7 5 10 10 C 1.46506 * 119.99861 * 359.72074 * 9 8 7 11 11 H 1.09007 * 109.46895 * 34.99873 * 10 9 8 12 12 C 1.52997 * 109.46979 * 275.00459 * 10 9 8 13 13 C 1.50696 * 109.47117 * 155.00030 * 10 9 8 14 14 H 1.07997 * 119.99576 * 35.00358 * 13 10 9 15 15 C 1.37878 * 119.99959 * 215.00291 * 13 10 9 16 16 N 1.31515 * 119.99881 * 184.91481 * 15 13 10 17 17 Si 1.86798 * 120.00060 * 4.91398 * 15 13 10 18 18 H 1.48502 * 109.46929 * 84.83657 * 17 15 13 19 19 H 1.48494 * 109.47261 * 204.83419 * 17 15 13 20 20 H 1.48506 * 109.47144 * 324.83853 * 17 15 13 21 21 N 1.31754 * 119.07825 * 89.99684 * 3 2 1 22 22 H 1.09003 * 109.47047 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47005 * 299.99650 * 1 2 3 24 24 H 1.08991 * 109.47467 * 59.99872 * 1 2 3 25 25 H 1.09005 * 109.47005 * 240.00350 * 2 1 3 26 26 H 1.09000 * 109.47668 * 120.00742 * 2 1 3 27 27 H 1.08998 * 109.47308 * 89.99881 * 6 5 4 28 28 H 1.08999 * 109.47281 * 209.99686 * 6 5 4 29 29 H 1.09008 * 109.46943 * 329.99650 * 6 5 4 30 30 H 1.08002 * 120.82813 * 180.02562 * 7 5 4 31 31 H 0.96994 * 120.00195 * 179.72297 * 9 8 7 32 32 H 1.09001 * 109.47284 * 295.01947 * 12 10 9 33 33 H 1.08994 * 109.47942 * 55.02606 * 12 10 9 34 34 H 1.09002 * 109.47015 * 175.02810 * 12 10 9 35 35 H 0.97004 * 119.99822 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2462 2.0247 -1.1516 5 6 2.6874 3.2738 -1.1961 6 6 2.9279 3.9509 -2.5208 7 6 2.9241 3.9473 -0.0138 8 6 2.6872 3.2785 1.1887 9 7 2.9044 3.9124 2.4013 10 6 3.3922 5.2936 2.4288 11 1 2.9668 5.8459 1.5908 12 6 4.9183 5.2977 2.3202 13 6 2.9788 5.9467 3.7225 14 1 2.9418 5.3664 4.6325 15 6 2.6479 7.2850 3.7442 16 7 2.3811 7.8779 4.8873 17 14 2.5788 8.2560 2.1499 18 1 1.2456 8.0792 1.5201 19 1 2.8035 9.6955 2.4369 20 1 3.6321 7.7652 1.2252 21 7 2.2458 2.0245 1.1515 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 2.0168 4.4563 -2.8412 28 1 3.7304 4.6809 -2.4154 29 1 3.2103 3.2052 -3.2641 30 1 3.2833 4.9658 -0.0193 31 1 2.7335 3.4418 3.2321 32 1 5.3467 4.8227 3.2027 33 1 5.2207 4.7481 1.4288 34 1 5.2749 6.3255 2.2517 35 1 2.1486 8.8196 4.9026 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287978741.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:21 Heat of formation + Delta-G solvation = 28.794530 kcal Electronic energy + Delta-G solvation = -16452.767733 eV Core-core repulsion = 13871.136718 eV Total energy + Delta-G solvation = -2581.631015 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.51703 -36.64861 -34.44743 -33.49448 -32.10921 -30.55026 -29.07163 -27.74841 -25.44059 -24.66422 -22.13328 -21.32926 -20.00257 -18.12720 -16.85451 -15.98563 -15.06219 -14.92339 -14.71050 -14.25487 -13.87286 -13.61436 -13.12842 -12.90482 -12.68067 -12.60203 -12.35845 -12.13155 -11.73803 -11.53424 -11.27314 -10.99330 -10.95056 -10.84067 -10.28147 -10.07411 -10.00503 -9.38042 -9.13310 -8.81029 -8.70237 -7.36807 -6.35299 -4.39977 1.51330 1.93604 3.11235 3.18926 3.21218 3.75063 4.17089 4.29316 4.35268 4.72167 5.00327 5.22857 5.30156 5.43608 5.49237 5.59483 5.66754 5.69388 5.92237 5.94194 5.99442 6.06082 6.14063 6.28141 6.31061 6.33446 6.45586 6.59802 6.91386 7.07175 7.25132 7.42747 7.87380 8.23589 8.42261 8.67201 8.84902 9.24038 10.76641 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.028875 B = 0.006994 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.479435 B = 4002.315768 C = 4422.122522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.050 4.050 3 C 0.358 3.642 4 N -0.578 5.578 5 C 0.193 3.807 6 C -0.101 4.101 7 C -0.304 4.304 8 C 0.445 3.555 9 N -0.678 5.678 10 C 0.236 3.764 11 H 0.044 0.956 12 C -0.154 4.154 13 C -0.531 4.531 14 H 0.081 0.919 15 C 0.082 3.918 16 N -0.883 5.883 17 Si 0.873 3.127 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.262 1.262 21 N -0.591 5.591 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.137 0.863 31 H 0.402 0.598 32 H 0.052 0.948 33 H 0.028 0.972 34 H 0.056 0.944 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.226 -8.866 -11.499 14.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.089 4.089 3 C 0.088 3.912 4 N -0.301 5.301 5 C 0.052 3.948 6 C -0.158 4.158 7 C -0.333 4.333 8 C 0.198 3.802 9 N -0.305 5.305 10 C 0.134 3.866 11 H 0.061 0.939 12 C -0.213 4.213 13 C -0.569 4.569 14 H 0.099 0.901 15 C -0.123 4.123 16 N -0.519 5.519 17 Si 0.699 3.301 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.187 1.187 21 N -0.318 5.318 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.155 0.845 31 H 0.238 0.762 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.038 -9.286 -11.353 14.667 hybrid contribution 0.181 1.491 -0.238 1.520 sum 0.143 -7.795 -11.591 13.969 Atomic orbital electron populations 1.21654 0.94037 1.01821 1.02428 1.20240 0.96425 0.88854 1.03415 1.22673 0.89437 0.96103 0.83002 1.67989 1.21427 1.10766 1.29880 1.21202 0.89102 0.89484 0.95000 1.20681 1.02481 0.99981 0.92665 1.21960 1.15417 1.03443 0.92510 1.18821 0.85939 0.87571 0.87843 1.45673 1.66131 1.14993 1.03674 1.19271 0.90889 0.77902 0.98585 0.93874 1.22337 0.98560 1.00816 0.99562 1.20938 1.47323 0.95260 0.93367 0.90080 1.24950 0.93610 0.97384 0.96375 1.69870 1.44978 1.11891 1.25173 0.86922 0.79467 0.79597 0.84072 1.19707 1.20815 1.18666 1.67797 1.23252 1.09858 1.30907 0.91976 0.92323 0.92499 0.89739 0.89720 0.90322 0.90683 0.90483 0.84540 0.76229 0.92851 0.95319 0.92502 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.89 37.16 0.37 -1.29 16 2 C -0.05 -0.66 6.37 -27.88 -0.18 -0.83 16 3 C 0.36 6.23 6.90 -157.24 -1.08 5.15 16 4 N -0.58 -10.09 10.27 -7.07 -0.07 -10.17 16 5 C 0.19 3.27 6.82 -82.33 -0.56 2.71 16 6 C -0.10 -1.25 10.21 36.01 0.37 -0.89 16 7 C -0.30 -5.71 8.63 -39.11 -0.34 -6.05 16 8 C 0.44 8.98 7.69 -154.78 -1.19 7.79 16 9 N -0.68 -14.21 5.22 -54.90 -0.29 -14.49 16 10 C 0.24 5.28 1.92 -69.08 -0.13 5.15 16 11 H 0.04 0.98 3.65 -51.93 -0.19 0.79 16 12 C -0.15 -3.11 9.44 37.16 0.35 -2.76 16 13 C -0.53 -13.90 9.05 -34.44 -0.31 -14.22 16 14 H 0.08 2.30 8.06 -52.49 -0.42 1.87 16 15 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 16 N -0.88 -25.40 13.96 55.43 0.77 -24.63 16 17 Si 0.87 20.07 26.99 -169.99 -4.59 15.48 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.26 -5.63 6.82 56.52 0.39 -5.25 16 21 N -0.59 -11.46 10.37 -9.97 -0.10 -11.57 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 29 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 30 H 0.14 2.51 6.35 -52.49 -0.33 2.17 16 31 H 0.40 8.27 8.72 -40.82 -0.36 7.91 16 32 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.03 0.53 7.83 -51.93 -0.41 0.12 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 LS Contribution 294.52 15.07 4.44 4.44 Total: -1.00 -29.08 294.52 -7.73 -36.80 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.08 Total: 7.27 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -2.81 Total: -3.13 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 0.31 Total: -60.86 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.59 Total: 15.48 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.08 -7.73 -36.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287978741.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.599 kcal (2) G-P(sol) polarization free energy of solvation -29.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds