Wall clock time and date at job start Sun Mar 29 2020 21:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47371 * 2 1 4 4 N 1.31783 * 119.08696 * 269.98361 * 3 2 1 5 5 C 1.32548 * 121.01157 * 179.97438 * 4 3 2 6 6 C 1.50701 * 120.40041 * 179.97438 * 5 4 3 7 7 C 1.38116 * 119.19786 * 359.97438 * 5 4 3 8 8 C 1.39622 * 118.33616 * 0.02562 * 7 5 4 9 9 N 1.38541 * 120.53405 * 180.25015 * 8 7 5 10 10 C 1.46506 * 119.99861 * 359.72074 * 9 8 7 11 11 H 1.09007 * 109.46895 * 34.99873 * 10 9 8 12 12 C 1.52997 * 109.46979 * 275.00459 * 10 9 8 13 13 C 1.50696 * 109.47117 * 155.00030 * 10 9 8 14 14 H 1.07997 * 119.99576 * 35.00358 * 13 10 9 15 15 C 1.37878 * 119.99959 * 215.00291 * 13 10 9 16 16 N 1.31515 * 119.99881 * 184.91481 * 15 13 10 17 17 Si 1.86798 * 120.00060 * 4.91398 * 15 13 10 18 18 H 1.48502 * 109.46929 * 84.83657 * 17 15 13 19 19 H 1.48494 * 109.47261 * 204.83419 * 17 15 13 20 20 H 1.48506 * 109.47144 * 324.83853 * 17 15 13 21 21 N 1.31754 * 119.07825 * 89.99684 * 3 2 1 22 22 H 1.09003 * 109.47047 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47005 * 299.99650 * 1 2 3 24 24 H 1.08991 * 109.47467 * 59.99872 * 1 2 3 25 25 H 1.09005 * 109.47005 * 240.00350 * 2 1 3 26 26 H 1.09000 * 109.47668 * 120.00742 * 2 1 3 27 27 H 1.08998 * 109.47308 * 89.99881 * 6 5 4 28 28 H 1.08999 * 109.47281 * 209.99686 * 6 5 4 29 29 H 1.09008 * 109.46943 * 329.99650 * 6 5 4 30 30 H 1.08002 * 120.82813 * 180.02562 * 7 5 4 31 31 H 0.96994 * 120.00195 * 179.72297 * 9 8 7 32 32 H 1.09001 * 109.47284 * 295.01947 * 12 10 9 33 33 H 1.08994 * 109.47942 * 55.02606 * 12 10 9 34 34 H 1.09002 * 109.47015 * 175.02810 * 12 10 9 35 35 H 0.97004 * 119.99822 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2462 2.0247 -1.1516 5 6 2.6874 3.2738 -1.1961 6 6 2.9279 3.9509 -2.5208 7 6 2.9241 3.9473 -0.0138 8 6 2.6872 3.2785 1.1887 9 7 2.9044 3.9124 2.4013 10 6 3.3922 5.2936 2.4288 11 1 2.9668 5.8459 1.5908 12 6 4.9183 5.2977 2.3202 13 6 2.9788 5.9467 3.7225 14 1 2.9418 5.3664 4.6325 15 6 2.6479 7.2850 3.7442 16 7 2.3811 7.8779 4.8873 17 14 2.5788 8.2560 2.1499 18 1 1.2456 8.0792 1.5201 19 1 2.8035 9.6955 2.4369 20 1 3.6321 7.7652 1.2252 21 7 2.2458 2.0245 1.1515 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 2.0168 4.4563 -2.8412 28 1 3.7304 4.6809 -2.4154 29 1 3.2103 3.2052 -3.2641 30 1 3.2833 4.9658 -0.0193 31 1 2.7335 3.4418 3.2321 32 1 5.3467 4.8227 3.2027 33 1 5.2207 4.7481 1.4288 34 1 5.2749 6.3255 2.2517 35 1 2.1486 8.8196 4.9026 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287978741.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:21 Heat of formation + Delta-G solvation = 10.715232 kcal Electronic energy + Delta-G solvation = -16453.551710 eV Core-core repulsion = 13871.136718 eV Total energy + Delta-G solvation = -2582.414992 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.90346 -38.26184 -35.64654 -35.18270 -33.79220 -31.86680 -30.61749 -28.97408 -27.35527 -25.84874 -23.64412 -22.59850 -21.57295 -19.83576 -18.51789 -17.53114 -16.75967 -16.30932 -16.13931 -15.57807 -15.34852 -14.86354 -14.58485 -14.43176 -14.09356 -14.03067 -13.74706 -13.12846 -13.02880 -13.01920 -12.77593 -12.60691 -12.45842 -11.95627 -11.90203 -11.68604 -11.51750 -11.26460 -10.86107 -10.48199 -10.11248 -8.92531 -8.41514 -6.51288 0.16048 0.50086 1.31107 1.33283 1.42544 2.19828 2.25515 2.92725 2.99967 3.15677 3.45568 3.88741 4.22683 4.24307 4.32777 4.43539 4.44054 4.54595 4.67352 4.73017 4.77577 4.82865 4.90657 4.97629 5.02216 5.12580 5.18289 5.32459 5.36975 5.41665 5.56032 5.89180 6.05760 6.52778 6.57524 6.79054 7.16506 7.43498 8.74114 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.028875 B = 0.006994 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.479435 B = 4002.315768 C = 4422.122522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.050 4.050 3 C 0.348 3.652 4 N -0.581 5.581 5 C 0.195 3.805 6 C -0.098 4.098 7 C -0.322 4.322 8 C 0.427 3.573 9 N -0.689 5.689 10 C 0.245 3.755 11 H 0.046 0.954 12 C -0.147 4.147 13 C -0.535 4.535 14 H 0.042 0.958 15 C 0.026 3.974 16 N -0.933 5.933 17 Si 0.933 3.067 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.233 1.233 21 N -0.610 5.610 22 H 0.092 0.908 23 H 0.039 0.961 24 H 0.051 0.949 25 H 0.104 0.896 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.141 0.859 31 H 0.398 0.602 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.501 -9.464 -14.592 17.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.089 4.089 3 C 0.079 3.921 4 N -0.303 5.303 5 C 0.053 3.947 6 C -0.155 4.155 7 C -0.350 4.350 8 C 0.183 3.817 9 N -0.316 5.316 10 C 0.142 3.858 11 H 0.064 0.936 12 C -0.206 4.206 13 C -0.573 4.573 14 H 0.060 0.940 15 C -0.174 4.174 16 N -0.571 5.571 17 Si 0.756 3.244 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.156 1.156 21 N -0.337 5.337 22 H 0.111 0.889 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.122 0.878 26 H 0.109 0.891 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.159 0.841 31 H 0.233 0.767 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.246 -9.924 -14.474 17.552 hybrid contribution 0.060 1.526 0.726 1.691 sum 0.305 -8.398 -13.749 16.114 Atomic orbital electron populations 1.21618 0.92926 1.03498 1.01230 1.20424 0.97211 0.86531 1.04690 1.23534 0.88512 0.97586 0.82514 1.68155 1.21341 1.11093 1.29664 1.21933 0.87209 0.89219 0.96345 1.20820 1.03836 1.00490 0.90373 1.22112 1.16485 1.03839 0.92569 1.19017 0.86632 0.88273 0.87808 1.45386 1.67508 1.14597 1.04141 1.19069 0.92119 0.78364 0.96252 0.93626 1.22221 0.96767 1.01331 1.00271 1.21141 1.46962 0.95353 0.93889 0.93975 1.25811 0.93256 0.98523 0.99812 1.70010 1.46968 1.12413 1.27731 0.85955 0.80244 0.78064 0.80172 1.19596 1.20475 1.15570 1.67829 1.23845 1.09840 1.32144 0.88899 0.94132 0.92992 0.87791 0.89061 0.88782 0.88991 0.89091 0.84106 0.76680 0.93433 0.93300 0.92106 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 9.89 71.98 0.71 -2.16 16 2 C -0.05 -1.19 6.37 29.85 0.19 -1.00 16 3 C 0.35 11.55 6.90 138.77 0.96 12.51 16 4 N -0.58 -18.90 10.27 -176.28 -1.81 -20.71 16 5 C 0.19 6.07 6.82 42.42 0.29 6.36 16 6 C -0.10 -2.07 10.21 71.24 0.73 -1.34 16 7 C -0.32 -11.45 8.63 22.58 0.19 -11.26 16 8 C 0.43 16.99 7.69 133.16 1.02 18.02 16 9 N -0.69 -29.07 5.22 -327.62 -1.71 -30.78 16 10 C 0.25 10.86 1.92 44.24 0.09 10.95 16 11 H 0.05 2.00 3.65 -2.38 -0.01 2.00 16 12 C -0.15 -5.76 9.44 71.98 0.68 -5.08 16 13 C -0.54 -28.75 9.05 25.60 0.23 -28.52 16 14 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16 15 C 0.03 1.44 5.47 84.65 0.46 1.90 16 16 N -0.93 -55.25 13.96 21.45 0.30 -54.95 16 17 Si 0.93 40.70 26.99 68.60 1.85 42.55 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 19 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 20 H -0.23 -8.98 6.82 99.48 0.68 -8.31 16 21 N -0.61 -23.26 10.37 -185.44 -1.92 -25.19 16 22 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 24 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 26 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.09 1.65 8.09 -2.39 -0.02 1.63 16 29 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.14 4.81 6.35 -2.91 -0.02 4.79 16 31 H 0.40 16.98 8.72 -92.71 -0.81 16.17 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.05 1.70 7.83 -2.39 -0.02 1.69 16 34 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -63.57 294.52 2.51 -61.06 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.25 Total: 27.64 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 5.55 Total: 0.37 kcal Atomic # 7 Polarization: -126.47 SS G_CDS: -5.14 Total: -131.62 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 1.85 Total: 42.55 kcal Total: -63.57 2.51 -61.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287978741.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.775 kcal (2) G-P(sol) polarization free energy of solvation -63.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds