Wall clock time and date at job start Sun Mar 29 2020 21:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.47258 * 2 1 4 4 N 1.31788 * 119.07879 * 90.00174 * 3 2 1 5 5 C 1.32554 * 121.00824 * 180.02562 * 4 3 2 6 6 C 1.50692 * 120.39980 * 180.02562 * 5 4 3 7 7 C 1.38114 * 119.19896 * 359.97438 * 5 4 3 8 8 C 1.39630 * 118.33422 * 0.02562 * 7 5 4 9 9 N 1.38545 * 120.53272 * 179.97438 * 8 7 5 10 10 C 1.46499 * 119.99792 * 359.97438 * 9 8 7 11 11 H 1.09002 * 109.47391 * 325.00336 * 10 9 8 12 12 C 1.53000 * 109.46840 * 85.00666 * 10 9 8 13 13 C 1.50699 * 109.47060 * 205.00408 * 10 9 8 14 14 H 1.07999 * 120.00019 * 0.02562 * 13 10 9 15 15 C 1.37877 * 120.00129 * 180.02562 * 13 10 9 16 16 N 1.31519 * 119.99723 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 119.99900 * 179.97438 * 15 13 10 18 18 H 1.48491 * 109.47312 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46948 * 119.99892 * 17 15 13 20 20 H 1.48500 * 109.46809 * 239.99811 * 17 15 13 21 21 N 1.31747 * 119.08294 * 270.25774 * 3 2 1 22 22 H 1.09000 * 109.46745 * 299.99840 * 1 2 3 23 23 H 1.09000 * 109.47247 * 59.99759 * 1 2 3 24 24 H 1.08995 * 109.47115 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47202 * 240.00435 * 2 1 3 26 26 H 1.09000 * 109.47247 * 120.00241 * 2 1 3 27 27 H 1.09005 * 109.47420 * 269.97576 * 6 5 4 28 28 H 1.09002 * 109.47351 * 29.98105 * 6 5 4 29 29 H 1.08999 * 109.47416 * 149.97791 * 6 5 4 30 30 H 1.07999 * 120.83509 * 179.97438 * 7 5 4 31 31 H 0.97002 * 119.99798 * 180.02562 * 9 8 7 32 32 H 1.08992 * 109.47399 * 59.99666 * 12 10 9 33 33 H 1.09004 * 109.46724 * 180.02562 * 12 10 9 34 34 H 1.09001 * 109.47194 * 299.99493 * 12 10 9 35 35 H 0.97003 * 119.99231 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2459 2.0247 1.1518 5 6 2.6871 3.2739 1.1964 6 6 2.9271 3.9510 2.5211 7 6 2.9250 3.9471 0.0141 8 6 2.6885 3.2782 -1.1885 9 7 2.9114 3.9103 -2.4011 10 6 3.3986 5.2916 -2.4284 11 1 2.9689 5.8451 -1.5934 12 6 4.9242 5.2966 -2.3124 13 6 2.9913 5.9424 -3.7251 14 1 2.4256 5.3831 -4.4557 15 6 3.3407 7.2517 -3.9789 16 7 4.0290 7.9329 -3.0891 17 14 2.8363 8.0581 -5.5867 18 1 2.0753 7.0854 -6.4111 19 1 1.9835 9.2399 -5.3015 20 1 4.0498 8.4901 -6.3258 21 7 2.2410 2.0264 -1.1513 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.0161 4.4568 2.8410 28 1 3.2090 3.2053 3.2645 29 1 3.7300 4.6806 2.4160 30 1 3.2843 4.9655 0.0197 31 1 2.7441 3.4384 -3.2319 32 1 5.3539 4.7432 -3.1473 33 1 5.2866 6.3244 -2.3323 34 1 5.2188 4.8259 -1.3744 35 1 4.2751 8.8540 -3.2679 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287978749.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:24 Heat of formation + Delta-G solvation = 27.781352 kcal Electronic energy + Delta-G solvation = -16348.906188 eV Core-core repulsion = 13767.231238 eV Total energy + Delta-G solvation = -2581.674949 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.40946 -36.47842 -34.36302 -33.56457 -31.93754 -30.27237 -28.52307 -27.61844 -25.36892 -24.57950 -22.12448 -21.23559 -20.05061 -17.93147 -16.31471 -15.95359 -14.93423 -14.84791 -14.64535 -14.15706 -13.88765 -13.51547 -13.03470 -12.79693 -12.58088 -12.37757 -12.01024 -11.85247 -11.49499 -11.27078 -11.15435 -10.94796 -10.87301 -10.52976 -10.33286 -10.14521 -9.96457 -9.18888 -9.02612 -8.62977 -8.60295 -7.23484 -6.26846 -4.35166 1.62325 2.03734 3.17253 3.25609 3.29189 3.87490 4.27536 4.38805 4.45266 4.82506 5.06814 5.29321 5.36974 5.48121 5.57108 5.68857 5.79490 5.81056 5.95476 6.07550 6.13559 6.20643 6.33648 6.38727 6.57236 6.77408 6.86284 6.96339 7.27971 7.48678 7.55671 7.71042 7.94180 8.19872 8.49745 8.70517 8.95685 9.32741 10.79545 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.032731 B = 0.006009 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.252701 B = 4658.701938 C = 5190.697576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.050 4.050 3 C 0.355 3.645 4 N -0.580 5.580 5 C 0.190 3.810 6 C -0.099 4.099 7 C -0.296 4.296 8 C 0.445 3.555 9 N -0.683 5.683 10 C 0.267 3.733 11 H 0.044 0.956 12 C -0.153 4.153 13 C -0.532 4.532 14 H 0.064 0.936 15 C 0.068 3.932 16 N -0.885 5.885 17 Si 0.905 3.095 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 N -0.595 5.595 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.143 0.857 31 H 0.398 0.602 32 H 0.032 0.968 33 H 0.094 0.906 34 H 0.013 0.987 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.493 -8.616 6.728 11.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.089 4.089 3 C 0.085 3.915 4 N -0.302 5.302 5 C 0.049 3.951 6 C -0.157 4.157 7 C -0.325 4.325 8 C 0.199 3.801 9 N -0.309 5.309 10 C 0.165 3.835 11 H 0.062 0.938 12 C -0.212 4.212 13 C -0.571 4.571 14 H 0.082 0.918 15 C -0.136 4.136 16 N -0.523 5.523 17 Si 0.732 3.268 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.207 1.207 21 N -0.322 5.322 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.160 0.840 31 H 0.232 0.768 32 H 0.051 0.949 33 H 0.113 0.887 34 H 0.033 0.967 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.625 -9.027 6.725 11.558 hybrid contribution 0.090 1.330 -1.298 1.861 sum -2.535 -7.697 5.426 9.753 Atomic orbital electron populations 1.21650 0.94134 1.01724 1.02379 1.20224 0.96349 0.88990 1.03322 1.22614 0.89794 0.96039 0.83065 1.67975 1.21514 1.10877 1.29853 1.21207 0.89334 0.89453 0.95090 1.20667 1.02502 0.99938 0.92589 1.22044 1.14504 1.03711 0.92259 1.18763 0.85974 0.87514 0.87871 1.45514 1.66264 1.15705 1.03404 1.18911 0.91069 0.75018 0.98473 0.93798 1.22195 0.98380 1.03535 0.97070 1.21197 1.36074 0.97472 1.02344 0.91789 1.24868 0.94535 0.96833 0.97338 1.69878 1.37588 1.10371 1.34466 0.86332 0.78398 0.79288 0.82793 1.19652 1.20759 1.20746 1.67763 1.23452 1.10036 1.30950 0.92488 0.92407 0.92058 0.89839 0.89790 0.90396 0.90658 0.90566 0.83974 0.76763 0.94915 0.88749 0.96749 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.89 37.16 0.37 -1.32 16 2 C -0.05 -0.67 6.37 -27.88 -0.18 -0.85 16 3 C 0.36 6.37 6.90 -157.24 -1.08 5.29 16 4 N -0.58 -10.50 10.27 -7.07 -0.07 -10.57 16 5 C 0.19 3.36 6.81 -82.33 -0.56 2.79 16 6 C -0.10 -1.32 10.21 36.00 0.37 -0.95 16 7 C -0.30 -5.84 8.61 -39.11 -0.34 -6.18 16 8 C 0.45 9.34 7.69 -154.77 -1.19 8.15 16 9 N -0.68 -14.82 5.22 -54.90 -0.29 -15.10 16 10 C 0.27 6.40 2.26 -69.08 -0.16 6.24 16 11 H 0.04 1.13 6.51 -51.93 -0.34 0.79 16 12 C -0.15 -3.55 9.23 37.16 0.34 -3.21 16 13 C -0.53 -13.77 8.73 -34.44 -0.30 -14.07 16 14 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 15 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 16 N -0.89 -23.62 11.32 55.43 0.63 -22.99 16 17 Si 0.90 20.24 29.54 -169.99 -5.02 15.21 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 N -0.59 -11.86 10.37 -9.96 -0.10 -11.96 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 30 H 0.14 2.83 6.31 -52.49 -0.33 2.49 16 31 H 0.40 8.32 8.66 -40.82 -0.35 7.97 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 34 H 0.01 0.30 7.76 -51.93 -0.40 -0.11 16 35 H 0.27 6.72 8.31 -40.82 -0.34 6.39 16 LS Contribution 294.63 15.07 4.44 4.44 Total: -1.00 -27.85 294.63 -8.32 -36.17 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -5.08 Total: 7.24 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -2.82 Total: -2.44 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: 0.16 Total: -60.63 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.85 -8.32 -36.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287978749.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.955 kcal (2) G-P(sol) polarization free energy of solvation -27.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds