Wall clock time and date at job start Sun Mar 29 2020 21:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.47258 * 2 1 4 4 N 1.31788 * 119.07879 * 90.00174 * 3 2 1 5 5 C 1.32554 * 121.00824 * 180.02562 * 4 3 2 6 6 C 1.50692 * 120.39980 * 180.02562 * 5 4 3 7 7 C 1.38114 * 119.19896 * 359.97438 * 5 4 3 8 8 C 1.39630 * 118.33422 * 0.02562 * 7 5 4 9 9 N 1.38545 * 120.53272 * 179.97438 * 8 7 5 10 10 C 1.46499 * 119.99792 * 359.97438 * 9 8 7 11 11 H 1.09002 * 109.47391 * 325.00336 * 10 9 8 12 12 C 1.53000 * 109.46840 * 85.00666 * 10 9 8 13 13 C 1.50699 * 109.47060 * 205.00408 * 10 9 8 14 14 H 1.07999 * 120.00019 * 0.02562 * 13 10 9 15 15 C 1.37877 * 120.00129 * 180.02562 * 13 10 9 16 16 N 1.31519 * 119.99723 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 119.99900 * 179.97438 * 15 13 10 18 18 H 1.48491 * 109.47312 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46948 * 119.99892 * 17 15 13 20 20 H 1.48500 * 109.46809 * 239.99811 * 17 15 13 21 21 N 1.31747 * 119.08294 * 270.25774 * 3 2 1 22 22 H 1.09000 * 109.46745 * 299.99840 * 1 2 3 23 23 H 1.09000 * 109.47247 * 59.99759 * 1 2 3 24 24 H 1.08995 * 109.47115 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47202 * 240.00435 * 2 1 3 26 26 H 1.09000 * 109.47247 * 120.00241 * 2 1 3 27 27 H 1.09005 * 109.47420 * 269.97576 * 6 5 4 28 28 H 1.09002 * 109.47351 * 29.98105 * 6 5 4 29 29 H 1.08999 * 109.47416 * 149.97791 * 6 5 4 30 30 H 1.07999 * 120.83509 * 179.97438 * 7 5 4 31 31 H 0.97002 * 119.99798 * 180.02562 * 9 8 7 32 32 H 1.08992 * 109.47399 * 59.99666 * 12 10 9 33 33 H 1.09004 * 109.46724 * 180.02562 * 12 10 9 34 34 H 1.09001 * 109.47194 * 299.99493 * 12 10 9 35 35 H 0.97003 * 119.99231 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2459 2.0247 1.1518 5 6 2.6871 3.2739 1.1964 6 6 2.9271 3.9510 2.5211 7 6 2.9250 3.9471 0.0141 8 6 2.6885 3.2782 -1.1885 9 7 2.9114 3.9103 -2.4011 10 6 3.3986 5.2916 -2.4284 11 1 2.9689 5.8451 -1.5934 12 6 4.9242 5.2966 -2.3124 13 6 2.9913 5.9424 -3.7251 14 1 2.4256 5.3831 -4.4557 15 6 3.3407 7.2517 -3.9789 16 7 4.0290 7.9329 -3.0891 17 14 2.8363 8.0581 -5.5867 18 1 2.0753 7.0854 -6.4111 19 1 1.9835 9.2399 -5.3015 20 1 4.0498 8.4901 -6.3258 21 7 2.2410 2.0264 -1.1513 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.0161 4.4568 2.8410 28 1 3.2090 3.2053 3.2645 29 1 3.7300 4.6806 2.4160 30 1 3.2843 4.9655 0.0197 31 1 2.7441 3.4384 -3.2319 32 1 5.3539 4.7432 -3.1473 33 1 5.2866 6.3244 -2.3323 34 1 5.2188 4.8259 -1.3744 35 1 4.2751 8.8540 -3.2679 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287978749.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:23 Heat of formation + Delta-G solvation = 11.949320 kcal Electronic energy + Delta-G solvation = -16349.592716 eV Core-core repulsion = 13767.231238 eV Total energy + Delta-G solvation = -2582.361478 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.87671 -38.17775 -35.63465 -35.29463 -33.52140 -31.65764 -30.23964 -28.96606 -27.33784 -25.82190 -23.73611 -22.59456 -21.67298 -19.58678 -18.06152 -17.56567 -16.77105 -16.27352 -16.14396 -15.50088 -15.39439 -14.81771 -14.45543 -14.26944 -14.06732 -13.78261 -13.43474 -13.08999 -12.99693 -12.87629 -12.75579 -12.56591 -12.35190 -12.17969 -11.93252 -11.71237 -11.48058 -11.11654 -10.63849 -10.44410 -10.10482 -8.88850 -8.24347 -6.39628 0.18094 0.51408 1.40665 1.43252 1.53980 2.22082 2.45802 2.94542 3.07094 3.16642 3.47271 3.91840 4.25222 4.34309 4.43749 4.45123 4.53459 4.65646 4.77055 4.81204 4.89994 4.93610 4.99083 5.03022 5.11536 5.18705 5.30392 5.34065 5.52697 5.64051 5.79180 5.88844 6.05697 6.51139 6.66226 6.90843 7.30414 7.45621 8.81641 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.032731 B = 0.006009 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.252701 B = 4658.701938 C = 5190.697576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.049 4.049 3 C 0.346 3.654 4 N -0.581 5.581 5 C 0.193 3.807 6 C -0.097 4.097 7 C -0.318 4.318 8 C 0.428 3.572 9 N -0.689 5.689 10 C 0.278 3.722 11 H 0.021 0.979 12 C -0.139 4.139 13 C -0.551 4.551 14 H 0.061 0.939 15 C 0.025 3.975 16 N -0.909 5.909 17 Si 0.967 3.033 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.277 1.277 21 N -0.608 5.608 22 H 0.050 0.950 23 H 0.041 0.959 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.134 0.866 31 H 0.399 0.601 32 H 0.030 0.970 33 H 0.075 0.925 34 H 0.024 0.976 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.990 -9.556 7.334 12.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.088 4.088 3 C 0.077 3.923 4 N -0.303 5.303 5 C 0.052 3.948 6 C -0.154 4.154 7 C -0.347 4.347 8 C 0.183 3.817 9 N -0.316 5.316 10 C 0.175 3.825 11 H 0.039 0.961 12 C -0.198 4.198 13 C -0.590 4.590 14 H 0.079 0.921 15 C -0.176 4.176 16 N -0.547 5.547 17 Si 0.792 3.208 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.202 1.202 21 N -0.335 5.335 22 H 0.069 0.931 23 H 0.060 0.940 24 H 0.112 0.888 25 H 0.110 0.890 26 H 0.121 0.879 27 H 0.113 0.887 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.152 0.848 31 H 0.233 0.767 32 H 0.049 0.951 33 H 0.094 0.906 34 H 0.043 0.957 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.130 -9.997 7.348 12.796 hybrid contribution 0.219 1.544 -1.383 2.084 sum -2.911 -8.453 5.965 10.748 Atomic orbital electron populations 1.21616 0.92811 1.03517 1.01259 1.20426 0.97305 0.86369 1.04686 1.23567 0.88616 0.97619 0.82521 1.68152 1.21476 1.10940 1.29761 1.21892 0.87380 0.89281 0.96238 1.20790 1.03718 1.00401 0.90456 1.22108 1.16077 1.03666 0.92829 1.18978 0.86571 0.88271 0.87838 1.45243 1.67429 1.15003 1.03939 1.18588 0.91156 0.75905 0.96861 0.96123 1.22004 0.97982 1.02283 0.97493 1.21467 1.36381 0.98068 1.03050 0.92110 1.25616 0.94454 0.97279 1.00295 1.69977 1.38116 1.10674 1.35919 0.85366 0.78096 0.78202 0.79113 1.19412 1.20461 1.20208 1.67826 1.23951 1.09661 1.32093 0.93051 0.94020 0.88829 0.88986 0.87862 0.88739 0.88989 0.89476 0.84817 0.76669 0.95078 0.90617 0.95689 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 9.89 71.98 0.71 -2.19 16 2 C -0.05 -1.21 6.37 29.85 0.19 -1.02 16 3 C 0.35 12.00 6.90 138.77 0.96 12.96 16 4 N -0.58 -20.14 10.27 -176.28 -1.81 -21.95 16 5 C 0.19 6.63 6.81 42.42 0.29 6.92 16 6 C -0.10 -2.35 10.21 71.23 0.73 -1.62 16 7 C -0.32 -12.62 8.61 22.58 0.19 -12.43 16 8 C 0.43 18.17 7.69 133.16 1.02 19.19 16 9 N -0.69 -30.55 5.22 -327.62 -1.71 -32.26 16 10 C 0.28 13.63 2.26 44.25 0.10 13.73 16 11 H 0.02 1.12 6.51 -2.39 -0.02 1.10 16 12 C -0.14 -6.55 9.23 71.98 0.66 -5.89 16 13 C -0.55 -28.91 8.73 25.60 0.22 -28.69 16 14 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 15 C 0.02 1.28 5.30 84.65 0.45 1.73 16 16 N -0.91 -48.93 11.32 21.45 0.24 -48.69 16 17 Si 0.97 41.44 29.54 68.60 2.03 43.47 16 18 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 19 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 20 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 21 N -0.61 -24.10 10.37 -185.43 -1.92 -26.02 16 22 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 28 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.09 1.94 8.09 -2.39 -0.02 1.92 16 30 H 0.13 5.46 6.31 -2.91 -0.02 5.44 16 31 H 0.40 17.08 8.66 -92.71 -0.80 16.27 16 32 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 3.87 6.07 -2.39 -0.01 3.85 16 34 H 0.02 1.07 7.76 -2.39 -0.02 1.06 16 35 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 Total: -1.00 -59.12 294.63 2.64 -56.48 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.28 Total: 26.28 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 5.53 Total: 2.69 kcal Atomic # 7 Polarization: -123.72 SS G_CDS: -5.20 Total: -128.92 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -59.12 2.64 -56.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287978749.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.431 kcal (2) G-P(sol) polarization free energy of solvation -59.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds