Wall clock time and date at job start Sun Mar 29 2020 21:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39868 * 126.04067 * 2 1 4 4 N 1.30844 * 108.20468 * 180.02562 * 3 2 1 5 5 N 1.40080 * 108.20202 * 0.02562 * 4 3 2 6 6 C 1.46502 * 126.03659 * 179.97438 * 5 4 3 7 7 H 1.08995 * 110.27101 * 27.11699 * 6 5 4 8 8 C 1.54594 * 110.30922 * 149.30758 * 6 5 4 9 9 C 1.54935 * 102.92096 * 140.87251 * 8 6 5 10 10 N 1.48527 * 103.22844 * 322.58764 * 9 8 6 11 11 C 1.46904 * 110.99851 * 159.71956 * 10 9 8 12 12 C 1.50701 * 109.47195 * 52.60668 * 11 10 9 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99694 * 180.27796 * 12 11 10 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 11 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 11 17 17 H 1.48504 * 109.47266 * 60.00049 * 16 14 12 18 18 H 1.48504 * 109.46970 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47383 * 299.99456 * 16 14 12 20 20 C 1.47903 * 105.82321 * 39.20515 * 10 9 8 21 21 C 1.34951 * 107.92552 * 0.26438 * 5 4 3 22 22 H 1.08996 * 109.47317 * 89.96885 * 1 2 3 23 23 H 1.08999 * 109.47238 * 209.97566 * 1 2 3 24 24 H 1.09008 * 109.47076 * 329.97324 * 1 2 3 25 25 H 1.08005 * 125.89805 * 0.02608 * 3 2 1 26 26 H 1.08998 * 110.72835 * 259.23540 * 8 6 5 27 27 H 1.09005 * 110.72534 * 22.34101 * 8 6 5 28 28 H 1.09003 * 110.66841 * 204.14912 * 9 8 6 29 29 H 1.09010 * 110.66641 * 81.02470 * 9 8 6 30 30 H 1.09000 * 109.47038 * 292.59811 * 11 10 9 31 31 H 1.09007 * 109.46566 * 172.60344 * 11 10 9 32 32 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.91673 * 94.02125 * 20 10 9 34 34 H 1.08999 * 109.91970 * 215.31891 * 20 10 9 35 35 H 1.08004 * 126.12645 * 179.73869 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5755 0.7302 -0.0006 5 7 3.5844 -0.6706 -0.0015 6 6 4.7746 -1.5248 -0.0029 7 1 5.6123 -1.0061 0.4629 8 6 4.4840 -2.8511 0.7364 9 6 5.2309 -3.8993 -0.1260 10 7 5.0213 -3.4102 -1.5127 11 6 6.0248 -3.9724 -2.4265 12 6 6.0449 -5.4730 -2.2888 13 1 5.3792 -5.9603 -1.5918 14 6 6.9176 -6.2232 -3.0480 15 7 7.7285 -5.6298 -3.8965 16 14 6.9480 -8.0826 -2.8717 17 1 5.6116 -8.6340 -3.2114 18 1 7.9658 -8.6505 -3.7920 19 1 7.2905 -8.4417 -1.4721 20 6 5.1348 -1.9372 -1.4422 21 6 2.3031 -1.0941 -0.0075 22 1 -0.3634 0.0006 -1.0276 23 1 -0.3634 -0.8902 0.5134 24 1 -0.3634 0.8898 0.5143 25 1 1.9951 2.1578 0.0004 26 1 4.8883 -2.8253 1.7483 27 1 3.4134 -3.0555 0.7555 28 1 4.7911 -4.8882 0.0038 29 1 6.2927 -3.9141 0.1204 30 1 7.0075 -3.5714 -2.1781 31 1 5.7720 -3.7051 -3.4525 32 1 8.3427 -6.1576 -4.4303 33 1 6.1558 -1.6321 -1.6714 34 1 4.4402 -1.4773 -2.1451 35 1 1.9724 -2.1222 -0.0136 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289756444.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:14 Heat of formation + Delta-G solvation = 81.614581 kcal Electronic energy + Delta-G solvation = -16371.650497 eV Core-core repulsion = 13792.309932 eV Total energy + Delta-G solvation = -2579.340565 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.15655 -38.25522 -33.84261 -32.46839 -31.55089 -29.87010 -28.52285 -26.72463 -25.51247 -22.87588 -21.95117 -20.64696 -19.84033 -19.61625 -16.87543 -16.39240 -15.54907 -14.80200 -14.51005 -14.20366 -14.02016 -13.53227 -13.16651 -12.89797 -12.82632 -12.48623 -12.14381 -11.85482 -11.57253 -11.48318 -11.28702 -10.95552 -10.80015 -10.62446 -10.53658 -10.39915 -9.96003 -9.31312 -9.12548 -8.54138 -8.16268 -7.49601 -6.11016 -4.13880 2.07700 2.65451 2.91842 3.28058 3.32890 3.34950 4.34819 4.51316 4.76224 4.95293 4.96847 5.06396 5.23981 5.27475 5.37802 5.45145 5.57792 5.70419 5.74322 5.90538 5.91956 6.02289 6.08049 6.21842 6.27129 6.41378 6.49446 6.82154 7.06315 7.21496 7.25286 7.62613 7.86053 7.89690 8.05005 8.37139 8.92701 9.51172 11.00222 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.047673 B = 0.005028 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.193689 B = 5567.587123 C = 5702.117330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.256 4.256 3 C 0.042 3.958 4 N -0.302 5.302 5 N -0.353 5.353 6 C 0.150 3.850 7 H 0.102 0.898 8 C -0.137 4.137 9 C 0.055 3.945 10 N -0.514 5.514 11 C 0.184 3.816 12 C -0.517 4.517 13 H 0.064 0.936 14 C 0.058 3.942 15 N -0.896 5.896 16 Si 0.899 3.101 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.026 3.974 21 C 0.068 3.932 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.177 0.823 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.048 0.952 30 H -0.005 1.005 31 H 0.034 0.966 32 H 0.263 0.737 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.014 8.619 9.193 16.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.268 4.268 3 C -0.144 4.144 4 N -0.123 5.123 5 N -0.135 5.135 6 C 0.048 3.952 7 H 0.120 0.880 8 C -0.176 4.176 9 C -0.074 4.074 10 N -0.239 5.239 11 C 0.058 3.942 12 C -0.556 4.556 13 H 0.082 0.918 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.727 3.273 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.103 4.103 21 C -0.079 4.079 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.194 0.806 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.013 0.987 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -8.991 8.700 8.835 15.316 hybrid contribution 0.188 -0.990 0.135 1.017 sum -8.804 7.709 8.970 14.744 Atomic orbital electron populations 1.19995 0.89630 1.01685 1.01307 1.20078 0.96920 0.91926 1.17834 1.23704 0.90135 0.99549 1.01018 1.77307 1.21262 0.89336 1.24393 1.48765 1.05387 1.04147 1.55179 1.22321 0.84948 0.89715 0.98223 0.87974 1.23058 1.02544 0.93061 0.98919 1.22990 0.98307 0.97808 0.88249 1.64959 1.50665 1.01441 1.06868 1.19932 0.87313 0.95070 0.91842 1.21123 1.20277 0.90950 1.23236 0.91821 1.24991 0.95341 0.98970 0.95094 1.69944 1.22820 1.35892 1.24819 0.86545 0.77843 0.85008 0.77940 1.20085 1.21263 1.20211 1.23283 1.00707 0.92359 0.93964 1.22283 0.84340 1.00137 1.01118 0.92378 0.92375 0.92276 0.80575 0.90468 0.90027 0.89450 0.93417 0.98694 0.94829 0.92719 0.92959 0.90634 0.81072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.37 36.01 0.37 -0.28 16 2 C -0.26 -3.28 6.10 -105.06 -0.64 -3.92 16 3 C 0.04 0.56 11.96 -17.36 -0.21 0.35 16 4 N -0.30 -4.84 12.58 30.63 0.39 -4.46 16 5 N -0.35 -5.49 3.47 -53.55 -0.19 -5.68 16 6 C 0.15 2.32 4.11 -66.57 -0.27 2.05 16 7 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 8 C -0.14 -1.93 6.61 -24.87 -0.16 -2.10 16 9 C 0.05 0.99 5.55 -1.90 -0.01 0.98 16 10 N -0.51 -10.79 5.39 -231.88 -1.25 -12.04 16 11 C 0.18 4.71 4.79 -4.97 -0.02 4.69 16 12 C -0.52 -14.11 8.56 -34.44 -0.29 -14.41 16 13 H 0.06 1.68 6.52 -52.49 -0.34 1.34 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.29 13.29 55.43 0.74 -25.56 16 16 Si 0.90 21.15 29.54 -169.99 -5.02 16.12 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 20 C 0.03 0.49 6.50 -2.75 -0.02 0.47 16 21 C 0.07 0.95 10.35 -17.22 -0.18 0.77 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 25 H 0.18 1.76 8.06 -52.48 -0.42 1.33 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.08 1.08 5.94 -51.93 -0.31 0.77 16 28 H 0.09 1.60 7.14 -51.93 -0.37 1.23 16 29 H 0.05 0.90 8.02 -51.92 -0.42 0.48 16 30 H 0.00 -0.13 7.81 -51.93 -0.41 -0.53 16 31 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.05 0.99 7.57 -51.93 -0.39 0.59 16 34 H 0.08 1.45 7.92 -51.93 -0.41 1.04 16 35 H 0.17 2.11 6.87 -52.48 -0.36 1.75 16 LS Contribution 288.94 15.07 4.35 4.35 Total: -1.00 -30.43 288.94 -7.62 -38.05 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -5.10 Total: -0.92 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -1.54 Total: -9.88 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: -0.31 Total: -47.73 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.43 -7.62 -38.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289756444.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.668 kcal (2) G-P(sol) polarization free energy of solvation -30.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds