Wall clock time and date at job start Sun Mar 29 2020 21:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39868 * 126.04067 * 2 1 4 4 N 1.30844 * 108.20468 * 180.02562 * 3 2 1 5 5 N 1.40080 * 108.20202 * 0.02562 * 4 3 2 6 6 C 1.46502 * 126.03659 * 179.97438 * 5 4 3 7 7 H 1.08995 * 110.27101 * 27.11699 * 6 5 4 8 8 C 1.54594 * 110.30922 * 149.30758 * 6 5 4 9 9 C 1.54935 * 102.92096 * 140.87251 * 8 6 5 10 10 N 1.48527 * 103.22844 * 322.58764 * 9 8 6 11 11 C 1.46904 * 110.99851 * 159.71956 * 10 9 8 12 12 C 1.50701 * 109.47195 * 52.60668 * 11 10 9 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99694 * 180.27796 * 12 11 10 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 11 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 11 17 17 H 1.48504 * 109.47266 * 60.00049 * 16 14 12 18 18 H 1.48504 * 109.46970 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47383 * 299.99456 * 16 14 12 20 20 C 1.47903 * 105.82321 * 39.20515 * 10 9 8 21 21 C 1.34951 * 107.92552 * 0.26438 * 5 4 3 22 22 H 1.08996 * 109.47317 * 89.96885 * 1 2 3 23 23 H 1.08999 * 109.47238 * 209.97566 * 1 2 3 24 24 H 1.09008 * 109.47076 * 329.97324 * 1 2 3 25 25 H 1.08005 * 125.89805 * 0.02608 * 3 2 1 26 26 H 1.08998 * 110.72835 * 259.23540 * 8 6 5 27 27 H 1.09005 * 110.72534 * 22.34101 * 8 6 5 28 28 H 1.09003 * 110.66841 * 204.14912 * 9 8 6 29 29 H 1.09010 * 110.66641 * 81.02470 * 9 8 6 30 30 H 1.09000 * 109.47038 * 292.59811 * 11 10 9 31 31 H 1.09007 * 109.46566 * 172.60344 * 11 10 9 32 32 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.91673 * 94.02125 * 20 10 9 34 34 H 1.08999 * 109.91970 * 215.31891 * 20 10 9 35 35 H 1.08004 * 126.12645 * 179.73869 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5755 0.7302 -0.0006 5 7 3.5844 -0.6706 -0.0015 6 6 4.7746 -1.5248 -0.0029 7 1 5.6123 -1.0061 0.4629 8 6 4.4840 -2.8511 0.7364 9 6 5.2309 -3.8993 -0.1260 10 7 5.0213 -3.4102 -1.5127 11 6 6.0248 -3.9724 -2.4265 12 6 6.0449 -5.4730 -2.2888 13 1 5.3792 -5.9603 -1.5918 14 6 6.9176 -6.2232 -3.0480 15 7 7.7285 -5.6298 -3.8965 16 14 6.9480 -8.0826 -2.8717 17 1 5.6116 -8.6340 -3.2114 18 1 7.9658 -8.6505 -3.7920 19 1 7.2905 -8.4417 -1.4721 20 6 5.1348 -1.9372 -1.4422 21 6 2.3031 -1.0941 -0.0075 22 1 -0.3634 0.0006 -1.0276 23 1 -0.3634 -0.8902 0.5134 24 1 -0.3634 0.8898 0.5143 25 1 1.9951 2.1578 0.0004 26 1 4.8883 -2.8253 1.7483 27 1 3.4134 -3.0555 0.7555 28 1 4.7911 -4.8882 0.0038 29 1 6.2927 -3.9141 0.1204 30 1 7.0075 -3.5714 -2.1781 31 1 5.7720 -3.7051 -3.4525 32 1 8.3427 -6.1576 -4.4303 33 1 6.1558 -1.6321 -1.6714 34 1 4.4402 -1.4773 -2.1451 35 1 1.9724 -2.1222 -0.0136 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289756444.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:14 Heat of formation + Delta-G solvation = 61.311658 kcal Electronic energy + Delta-G solvation = -16372.530898 eV Core-core repulsion = 13792.309932 eV Total energy + Delta-G solvation = -2580.220966 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.24650 -39.73208 -35.54089 -34.09652 -32.68095 -31.25886 -29.92901 -28.34130 -26.73542 -24.70979 -23.14290 -22.09904 -21.14506 -20.77682 -18.47601 -18.00569 -17.17306 -16.32088 -15.84345 -15.61584 -15.37971 -15.08988 -14.36664 -14.11971 -13.96738 -13.84606 -13.48234 -13.26943 -13.10792 -12.73011 -12.65160 -12.62599 -12.54108 -12.24043 -12.02127 -11.77153 -11.44982 -11.27766 -10.66225 -10.35224 -9.26870 -9.18540 -8.24544 -6.35838 0.99009 1.41397 1.44656 1.52327 1.54025 1.92625 2.38505 3.09320 3.19746 3.40528 3.53154 3.88506 3.98612 4.07847 4.21842 4.31412 4.52603 4.57159 4.62659 4.73213 4.81390 4.91143 4.96459 5.01511 5.05329 5.13137 5.25174 5.30965 5.37748 5.57199 5.84407 5.88495 6.13201 6.16267 6.39674 6.79738 6.82113 7.34917 8.87571 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.047673 B = 0.005028 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.193689 B = 5567.587123 C = 5702.117330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.255 4.255 3 C 0.042 3.958 4 N -0.339 5.339 5 N -0.367 5.367 6 C 0.160 3.840 7 H 0.109 0.891 8 C -0.117 4.117 9 C 0.053 3.947 10 N -0.521 5.521 11 C 0.199 3.801 12 C -0.530 4.530 13 H 0.072 0.928 14 C 0.002 3.998 15 N -0.936 5.936 16 Si 0.972 3.028 17 H -0.267 1.267 18 H -0.286 1.286 19 H -0.263 1.263 20 C 0.030 3.970 21 C 0.053 3.947 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.207 0.793 26 H 0.107 0.893 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.036 0.964 30 H -0.032 1.032 31 H -0.002 1.002 32 H 0.265 0.735 33 H 0.039 0.961 34 H 0.063 0.937 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.768 8.204 10.938 18.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.266 4.266 3 C -0.143 4.143 4 N -0.160 5.160 5 N -0.149 5.149 6 C 0.057 3.943 7 H 0.127 0.873 8 C -0.156 4.156 9 C -0.075 4.075 10 N -0.246 5.246 11 C 0.072 3.928 12 C -0.568 4.568 13 H 0.090 0.910 14 C -0.196 4.196 15 N -0.576 5.576 16 Si 0.796 3.204 17 H -0.192 1.192 18 H -0.211 1.211 19 H -0.188 1.188 20 C -0.100 4.100 21 C -0.093 4.093 22 H 0.080 0.920 23 H 0.087 0.913 24 H 0.095 0.905 25 H 0.224 0.776 26 H 0.126 0.874 27 H 0.114 0.886 28 H 0.104 0.896 29 H 0.054 0.946 30 H -0.014 1.014 31 H 0.016 0.984 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -10.774 8.297 10.602 17.243 hybrid contribution 0.667 -0.753 -0.436 1.096 sum -10.107 7.544 10.166 16.199 Atomic orbital electron populations 1.20072 0.87241 1.03117 1.01977 1.20521 0.98528 0.91257 1.16281 1.24316 0.89473 1.01211 0.99332 1.77272 1.22959 0.89742 1.26048 1.48708 1.05613 1.04093 1.56509 1.22117 0.85782 0.90619 0.95794 0.87262 1.22967 1.03000 0.90384 0.99244 1.23016 0.98341 0.99082 0.87090 1.64807 1.48655 1.03038 1.08110 1.19564 0.87055 0.94988 0.91187 1.21472 1.20352 0.91711 1.23296 0.90983 1.25966 0.94784 1.04327 0.94545 1.70091 1.23687 1.37948 1.25842 0.85391 0.78054 0.78467 0.78461 1.19222 1.21105 1.18766 1.23203 0.99714 0.90673 0.96369 1.22697 0.84002 1.01297 1.01297 0.91984 0.91341 0.90534 0.77611 0.87434 0.88579 0.89583 0.94551 1.01408 0.98379 0.92624 0.94286 0.91858 0.79733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.05 10.37 71.24 0.74 -0.32 16 2 C -0.25 -5.91 6.10 -20.15 -0.12 -6.03 16 3 C 0.04 1.04 11.96 85.23 1.02 2.06 16 4 N -0.34 -10.49 12.58 -57.02 -0.72 -11.21 16 5 N -0.37 -10.96 3.47 -323.32 -1.12 -12.08 16 6 C 0.16 4.80 4.11 45.87 0.19 4.98 16 7 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 8 C -0.12 -3.06 6.61 31.80 0.21 -2.85 16 9 C 0.05 1.87 5.55 86.65 0.48 2.35 16 10 N -0.52 -22.32 5.39 -887.55 -4.78 -27.10 16 11 C 0.20 10.65 4.79 85.56 0.41 11.06 16 12 C -0.53 -29.36 8.56 25.60 0.22 -29.14 16 13 H 0.07 3.78 6.52 -2.91 -0.02 3.77 16 14 C 0.00 0.12 5.46 84.65 0.46 0.58 16 15 N -0.94 -56.29 13.29 21.45 0.28 -56.01 16 16 Si 0.97 43.25 29.54 68.60 2.03 45.27 16 17 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 18 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 20 C 0.03 1.13 6.50 86.45 0.56 1.69 16 21 C 0.05 1.37 10.35 83.54 0.86 2.24 16 22 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.21 3.52 8.06 -2.91 -0.02 3.50 16 26 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.10 2.27 5.94 -2.38 -0.01 2.25 16 28 H 0.09 3.06 7.14 -2.39 -0.02 3.04 16 29 H 0.04 1.37 8.02 -2.38 -0.02 1.35 16 30 H -0.03 -1.83 7.81 -2.39 -0.02 -1.85 16 31 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 32 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 33 H 0.04 1.55 7.57 -2.39 -0.02 1.54 16 34 H 0.06 2.51 7.92 -2.39 -0.02 2.49 16 35 H 0.19 4.12 6.87 -2.91 -0.02 4.10 16 Total: -1.00 -66.81 288.94 1.78 -65.02 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 1.07 Total: 9.49 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 5.03 Total: -13.38 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -6.34 Total: -106.40 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -66.81 1.78 -65.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289756444.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.333 kcal (2) G-P(sol) polarization free energy of solvation -66.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds