Wall clock time and date at job start Sun Mar 29 2020 22:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 120.00092 * 2 1 4 4 N 1.46894 * 109.47155 * 123.19808 * 3 2 1 5 5 C 1.46897 * 111.00503 * 66.66087 * 4 3 2 6 6 C 1.50695 * 109.47107 * 66.04481 * 5 4 3 7 7 H 1.08006 * 120.00156 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00189 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99972 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00103 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47118 * 89.99576 * 10 8 6 12 12 H 1.48496 * 109.47194 * 209.99591 * 10 8 6 13 13 H 1.48502 * 109.46766 * 329.99886 * 10 8 6 14 14 C 1.46904 * 111.00089 * 302.70804 * 4 3 2 15 15 C 1.50703 * 109.46902 * 288.68622 * 14 4 3 16 16 C 1.35317 * 126.12827 * 93.99905 * 15 14 4 17 17 C 1.39870 * 107.92141 * 179.90105 * 16 15 14 18 18 N 1.30837 * 108.19958 * 0.36748 * 17 16 15 19 19 N 1.34948 * 126.12519 * 274.30730 * 15 14 4 20 20 C 1.46504 * 126.03775 * 359.94970 * 19 15 14 21 21 H 1.08008 * 119.99610 * 0.02562 * 1 2 3 22 22 H 1.07999 * 120.00284 * 180.02562 * 1 2 3 23 23 H 1.07999 * 119.99019 * 179.97438 * 2 1 3 24 24 H 1.08999 * 109.47074 * 3.19256 * 3 2 1 25 25 H 1.09001 * 109.46796 * 243.19161 * 3 2 1 26 26 H 1.08994 * 109.47624 * 186.04658 * 5 4 3 27 27 H 1.09004 * 109.47103 * 306.05198 * 5 4 3 28 28 H 0.96998 * 120.00015 * 180.02562 * 9 8 6 29 29 H 1.08994 * 109.47477 * 168.68426 * 14 4 3 30 30 H 1.09003 * 109.47130 * 48.67848 * 14 4 3 31 31 H 1.07996 * 126.03785 * 0.03655 * 16 15 14 32 32 H 1.07994 * 125.90259 * 180.14073 * 17 16 15 33 33 H 1.09003 * 109.47221 * 89.99545 * 20 19 15 34 34 H 1.08999 * 109.46673 * 209.99449 * 20 19 15 35 35 H 1.08993 * 109.46978 * 329.99496 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9651 1.3499 1.1589 5 6 4.0304 0.3460 1.0364 6 6 4.9225 0.6994 -0.1256 7 1 4.7186 1.5819 -0.7141 8 6 5.9989 -0.1037 -0.4376 9 7 6.7777 0.2051 -1.4515 10 14 6.3511 -1.6303 0.5796 11 1 5.6325 -2.7912 -0.0047 12 1 7.8114 -1.9002 0.5780 13 1 5.8893 -1.4132 1.9742 14 6 2.2197 1.1762 2.4128 15 6 1.4047 2.4135 2.6883 16 6 0.1114 2.6104 2.3425 17 6 -0.2631 3.8836 2.7841 18 7 0.7707 4.4346 3.3668 19 7 1.8358 3.5260 3.3190 20 6 3.1802 3.7447 3.8586 21 1 -0.5400 0.9354 -0.0004 22 1 -0.5400 -0.9353 0.0004 23 1 1.8499 -0.9354 0.0004 24 1 1.3566 2.1327 0.0572 25 1 2.6466 1.3879 -0.9172 26 1 4.6190 0.3270 1.9536 27 1 3.5872 -0.6356 0.8687 28 1 7.5347 -0.3601 -1.6712 29 1 2.9198 1.0123 3.2320 30 1 1.5558 0.3161 2.3246 31 1 -0.5206 1.9076 1.8201 32 1 -1.2363 4.3355 2.6616 33 1 3.8109 4.1943 3.0917 34 1 3.1223 4.4119 4.7186 35 1 3.6075 2.7906 4.1671 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292049683.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:52 Heat of formation + Delta-G solvation = 109.827422 kcal Electronic energy + Delta-G solvation = -16772.763685 eV Core-core repulsion = 14194.646521 eV Total energy + Delta-G solvation = -2578.117165 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.96371 -37.54445 -33.21587 -32.90832 -32.21977 -30.65224 -27.69345 -26.49729 -26.31087 -23.58173 -21.14088 -20.83958 -19.62486 -18.80811 -16.90389 -16.26516 -15.54423 -15.07044 -14.61300 -14.47718 -14.04017 -13.83927 -13.52639 -12.96466 -12.65388 -12.44169 -12.35749 -12.13124 -11.76355 -11.34922 -11.02991 -10.99168 -10.76058 -10.35171 -10.28914 -9.93138 -9.47022 -9.08211 -8.90313 -8.64608 -8.24537 -7.52790 -6.11708 -4.09706 2.13928 2.62531 2.81350 3.08457 3.21715 3.30059 3.30572 4.34736 4.76090 4.81728 5.02820 5.20804 5.28299 5.36984 5.39381 5.52154 5.58494 5.71866 5.86230 5.90393 5.99915 6.05857 6.27763 6.41036 6.55580 6.73123 6.84303 6.91133 7.00174 7.09519 7.27644 7.50330 7.76523 7.88996 7.99477 8.56321 8.96739 9.49070 11.01274 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.027605 B = 0.007536 C = 0.006583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.063751 B = 3714.704732 C = 4252.124530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C 0.083 3.917 4 N -0.514 5.514 5 C 0.160 3.840 6 C -0.510 4.510 7 H 0.081 0.919 8 C 0.070 3.930 9 N -0.898 5.898 10 Si 0.874 3.126 11 H -0.277 1.277 12 H -0.285 1.285 13 H -0.268 1.268 14 C 0.104 3.896 15 C 0.116 3.884 16 C -0.281 4.281 17 C 0.040 3.960 18 N -0.309 5.309 19 N -0.361 5.361 20 C 0.104 3.896 21 H 0.095 0.905 22 H 0.088 0.912 23 H 0.107 0.893 24 H 0.067 0.933 25 H 0.098 0.902 26 H 0.027 0.973 27 H -0.009 1.009 28 H 0.264 0.736 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.143 0.857 32 H 0.177 0.823 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.105 1.594 8.467 14.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.186 4.186 3 C -0.044 4.044 4 N -0.237 5.237 5 C 0.034 3.966 6 C -0.548 4.548 7 H 0.099 0.901 8 C -0.132 4.132 9 N -0.537 5.537 10 Si 0.701 3.299 11 H -0.203 1.203 12 H -0.211 1.211 13 H -0.192 1.192 14 C -0.026 4.026 15 C -0.014 4.014 16 C -0.311 4.311 17 C -0.145 4.145 18 N -0.131 5.131 19 N -0.143 5.143 20 C -0.037 4.037 21 H 0.113 0.887 22 H 0.106 0.894 23 H 0.125 0.875 24 H 0.086 0.914 25 H 0.116 0.884 26 H 0.045 0.955 27 H 0.009 0.991 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.161 0.839 32 H 0.194 0.806 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.077 3.079 9.055 13.893 hybrid contribution -0.353 -2.456 -0.062 2.482 sum -10.430 0.623 8.993 13.786 Atomic orbital electron populations 1.23756 0.95918 1.01062 1.03620 1.23814 0.96366 1.01052 0.97324 1.21370 0.94429 0.92794 0.95837 1.62231 1.10859 1.51388 0.99189 1.20248 0.89313 0.88686 0.98321 1.20978 1.09843 1.11557 1.12411 0.90086 1.24883 0.95843 0.97511 0.94948 1.69887 1.17030 1.38784 1.27962 0.86896 0.77751 0.83970 0.81298 1.20309 1.21118 1.19236 1.20718 0.95719 0.91139 0.95006 1.21070 0.94442 0.90212 0.95632 1.21246 0.95963 0.99872 1.14006 1.23695 0.97999 0.94497 0.98266 1.77271 0.95094 1.15398 1.25352 1.48415 1.10349 1.11003 1.44528 1.21813 0.78770 1.03390 0.99747 0.88703 0.89365 0.87476 0.91423 0.88374 0.95469 0.99149 0.92588 0.90469 0.92221 0.83927 0.80573 0.90106 0.90052 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.82 13.82 29.01 0.40 -2.42 16 2 C -0.17 -2.73 7.34 -36.03 -0.26 -3.00 16 3 C 0.08 1.54 5.45 -4.98 -0.03 1.52 16 4 N -0.51 -10.07 4.65 -238.97 -1.11 -11.18 16 5 C 0.16 3.61 3.65 -4.98 -0.02 3.59 16 6 C -0.51 -13.79 8.97 -34.44 -0.31 -14.10 16 7 H 0.08 2.42 7.39 -52.48 -0.39 2.03 16 8 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 9 N -0.90 -26.77 13.96 55.43 0.77 -26.00 16 10 Si 0.87 20.65 27.47 -169.99 -4.67 15.98 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 14 C 0.10 1.71 4.99 -4.97 -0.02 1.68 16 15 C 0.12 1.85 5.87 -82.26 -0.48 1.37 16 16 C -0.28 -4.14 9.84 -40.01 -0.39 -4.54 16 17 C 0.04 0.58 12.03 -17.37 -0.21 0.37 16 18 N -0.31 -5.05 12.58 30.62 0.39 -4.67 16 19 N -0.36 -5.77 4.01 -63.88 -0.26 -6.03 16 20 C 0.10 1.36 11.27 59.85 0.67 2.03 16 21 H 0.09 1.21 6.78 -52.48 -0.36 0.85 16 22 H 0.09 1.08 8.06 -52.49 -0.42 0.65 16 23 H 0.11 1.89 6.91 -52.49 -0.36 1.53 16 24 H 0.07 1.19 6.51 -51.93 -0.34 0.85 16 25 H 0.10 2.08 6.70 -51.93 -0.35 1.73 16 26 H 0.03 0.62 6.93 -51.93 -0.36 0.26 16 27 H -0.01 -0.20 5.91 -51.93 -0.31 -0.51 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.08 1.20 6.90 -51.93 -0.36 0.84 16 30 H 0.06 0.94 6.62 -51.93 -0.34 0.60 16 31 H 0.14 1.88 6.43 -52.49 -0.34 1.55 16 32 H 0.18 1.86 8.06 -52.49 -0.42 1.43 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.09 1.01 7.14 -51.93 -0.37 0.64 16 LS Contribution 287.04 15.07 4.33 4.33 Total: -1.00 -30.59 287.04 -6.03 -36.62 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -4.73 Total: 2.57 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -0.75 Total: -11.63 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.21 Total: -47.87 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.67 Total: 15.98 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.59 -6.03 -36.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292049683.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.446 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds