Wall clock time and date at job start Sun Mar 29 2020 22:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 120.00092 * 2 1 4 4 N 1.46894 * 109.47155 * 123.19808 * 3 2 1 5 5 C 1.46897 * 111.00503 * 66.66087 * 4 3 2 6 6 C 1.50695 * 109.47107 * 66.04481 * 5 4 3 7 7 H 1.08006 * 120.00156 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00189 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99972 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00103 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47118 * 89.99576 * 10 8 6 12 12 H 1.48496 * 109.47194 * 209.99591 * 10 8 6 13 13 H 1.48502 * 109.46766 * 329.99886 * 10 8 6 14 14 C 1.46904 * 111.00089 * 302.70804 * 4 3 2 15 15 C 1.50703 * 109.46902 * 288.68622 * 14 4 3 16 16 C 1.35317 * 126.12827 * 93.99905 * 15 14 4 17 17 C 1.39870 * 107.92141 * 179.90105 * 16 15 14 18 18 N 1.30837 * 108.19958 * 0.36748 * 17 16 15 19 19 N 1.34948 * 126.12519 * 274.30730 * 15 14 4 20 20 C 1.46504 * 126.03775 * 359.94970 * 19 15 14 21 21 H 1.08008 * 119.99610 * 0.02562 * 1 2 3 22 22 H 1.07999 * 120.00284 * 180.02562 * 1 2 3 23 23 H 1.07999 * 119.99019 * 179.97438 * 2 1 3 24 24 H 1.08999 * 109.47074 * 3.19256 * 3 2 1 25 25 H 1.09001 * 109.46796 * 243.19161 * 3 2 1 26 26 H 1.08994 * 109.47624 * 186.04658 * 5 4 3 27 27 H 1.09004 * 109.47103 * 306.05198 * 5 4 3 28 28 H 0.96998 * 120.00015 * 180.02562 * 9 8 6 29 29 H 1.08994 * 109.47477 * 168.68426 * 14 4 3 30 30 H 1.09003 * 109.47130 * 48.67848 * 14 4 3 31 31 H 1.07996 * 126.03785 * 0.03655 * 16 15 14 32 32 H 1.07994 * 125.90259 * 180.14073 * 17 16 15 33 33 H 1.09003 * 109.47221 * 89.99545 * 20 19 15 34 34 H 1.08999 * 109.46673 * 209.99449 * 20 19 15 35 35 H 1.08993 * 109.46978 * 329.99496 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9651 1.3499 1.1589 5 6 4.0304 0.3460 1.0364 6 6 4.9225 0.6994 -0.1256 7 1 4.7186 1.5819 -0.7141 8 6 5.9989 -0.1037 -0.4376 9 7 6.7777 0.2051 -1.4515 10 14 6.3511 -1.6303 0.5796 11 1 5.6325 -2.7912 -0.0047 12 1 7.8114 -1.9002 0.5780 13 1 5.8893 -1.4132 1.9742 14 6 2.2197 1.1762 2.4128 15 6 1.4047 2.4135 2.6883 16 6 0.1114 2.6104 2.3425 17 6 -0.2631 3.8836 2.7841 18 7 0.7707 4.4346 3.3668 19 7 1.8358 3.5260 3.3190 20 6 3.1802 3.7447 3.8586 21 1 -0.5400 0.9354 -0.0004 22 1 -0.5400 -0.9353 0.0004 23 1 1.8499 -0.9354 0.0004 24 1 1.3566 2.1327 0.0572 25 1 2.6466 1.3879 -0.9172 26 1 4.6190 0.3270 1.9536 27 1 3.5872 -0.6356 0.8687 28 1 7.5347 -0.3601 -1.6712 29 1 2.9198 1.0123 3.2320 30 1 1.5558 0.3161 2.3246 31 1 -0.5206 1.9076 1.8201 32 1 -1.2363 4.3355 2.6616 33 1 3.8109 4.1943 3.0917 34 1 3.1223 4.4119 4.7186 35 1 3.6075 2.7906 4.1671 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292049683.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:52 Heat of formation + Delta-G solvation = 88.654679 kcal Electronic energy + Delta-G solvation = -16773.681804 eV Core-core repulsion = 14194.646521 eV Total energy + Delta-G solvation = -2579.035284 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.11772 -39.01992 -34.87716 -34.33006 -33.58733 -32.06671 -29.45174 -27.72488 -27.48454 -25.25414 -22.71296 -21.97789 -20.89553 -20.12945 -18.87838 -17.51526 -16.92364 -16.54574 -16.13416 -15.94119 -15.44791 -15.12736 -14.68128 -14.48467 -14.24453 -13.83527 -13.53080 -13.43046 -13.14800 -12.93808 -12.54798 -12.48449 -12.24867 -11.90872 -11.76758 -11.56789 -11.45752 -10.78196 -10.30906 -10.13276 -9.41123 -9.03291 -8.26271 -6.29456 0.95345 1.35955 1.37483 1.42832 1.47836 1.73063 1.97170 2.35395 3.07405 3.35558 3.76477 3.81094 4.05434 4.21864 4.26468 4.37687 4.46218 4.53710 4.63585 4.72674 4.77671 4.89045 4.95406 4.98765 5.09632 5.22737 5.31044 5.53111 5.76537 5.83456 5.85181 5.97644 6.15420 6.32325 6.62470 6.76874 6.85224 7.33629 8.90487 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.027605 B = 0.007536 C = 0.006583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.063751 B = 3714.704732 C = 4252.124530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.197 4.197 3 C 0.093 3.907 4 N -0.530 5.530 5 C 0.172 3.828 6 C -0.511 4.511 7 H 0.034 0.966 8 C 0.008 3.992 9 N -0.950 5.950 10 Si 0.945 3.055 11 H -0.269 1.269 12 H -0.285 1.285 13 H -0.243 1.243 14 C 0.111 3.889 15 C 0.098 3.902 16 C -0.280 4.280 17 C 0.042 3.958 18 N -0.336 5.336 19 N -0.373 5.373 20 C 0.099 3.901 21 H 0.110 0.890 22 H 0.112 0.888 23 H 0.093 0.907 24 H 0.076 0.924 25 H 0.055 0.945 26 H 0.033 0.967 27 H -0.002 1.002 28 H 0.266 0.734 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.160 0.840 32 H 0.212 0.788 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.219 0.417 10.278 16.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.217 4.217 3 C -0.034 4.034 4 N -0.253 5.253 5 C 0.046 3.954 6 C -0.550 4.550 7 H 0.052 0.948 8 C -0.189 4.189 9 N -0.591 5.591 10 Si 0.768 3.232 11 H -0.194 1.194 12 H -0.211 1.211 13 H -0.167 1.167 14 C -0.018 4.018 15 C -0.031 4.031 16 C -0.310 4.310 17 C -0.142 4.142 18 N -0.158 5.158 19 N -0.155 5.155 20 C -0.042 4.042 21 H 0.128 0.872 22 H 0.130 0.870 23 H 0.111 0.889 24 H 0.094 0.906 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.016 0.984 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.178 0.822 32 H 0.228 0.772 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.215 1.914 10.883 16.472 hybrid contribution 0.179 -1.967 -0.690 2.093 sum -12.036 -0.053 10.192 15.772 Atomic orbital electron populations 1.24011 0.94697 1.02884 0.98720 1.23484 0.97280 0.99107 1.01809 1.21139 0.93916 0.94620 0.93748 1.62070 1.11542 1.50638 1.01045 1.19967 0.89633 0.89622 0.96203 1.21211 1.10671 1.09821 1.13257 0.94764 1.25823 0.95589 1.01274 0.96200 1.70058 1.18039 1.40676 1.30318 0.85754 0.77506 0.79322 0.80595 1.19410 1.21105 1.16654 1.20670 0.95880 0.91967 0.93308 1.21131 0.95098 0.90270 0.96591 1.21525 0.95642 1.00360 1.13455 1.24302 0.98826 0.94224 0.96857 1.77243 0.95871 1.16207 1.26493 1.48661 1.10997 1.10994 1.44848 1.21955 0.77810 1.04417 0.99968 0.87191 0.86963 0.88864 0.90566 0.92622 0.94913 0.98423 0.92547 0.89685 0.90997 0.82250 0.77185 0.91359 0.88147 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 13.82 67.78 0.94 -3.00 16 2 C -0.20 -6.19 7.34 25.64 0.19 -6.01 16 3 C 0.09 3.47 5.45 85.56 0.47 3.94 16 4 N -0.53 -20.65 4.65 -909.97 -4.23 -24.89 16 5 C 0.17 7.72 3.65 85.56 0.31 8.03 16 6 C -0.51 -28.61 8.97 25.60 0.23 -28.39 16 7 H 0.03 2.18 7.39 -2.91 -0.02 2.16 16 8 C 0.01 0.47 5.47 84.65 0.46 0.93 16 9 N -0.95 -58.71 13.96 21.45 0.30 -58.41 16 10 Si 0.94 42.44 27.47 68.60 1.88 44.32 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 13 H -0.24 -9.89 6.54 99.48 0.65 -9.24 16 14 C 0.11 3.44 4.99 85.56 0.43 3.86 16 15 C 0.10 2.96 5.87 41.41 0.24 3.20 16 16 C -0.28 -7.46 9.84 21.99 0.22 -7.24 16 17 C 0.04 1.09 12.03 85.24 1.03 2.12 16 18 N -0.34 -10.38 12.58 -57.03 -0.72 -11.10 16 19 N -0.37 -11.40 4.01 -356.02 -1.43 -12.83 16 20 C 0.10 2.50 11.27 127.77 1.44 3.94 16 21 H 0.11 2.32 6.78 -2.91 -0.02 2.30 16 22 H 0.11 2.21 8.06 -2.91 -0.02 2.18 16 23 H 0.09 3.20 6.91 -2.91 -0.02 3.18 16 24 H 0.08 2.64 6.51 -2.39 -0.02 2.62 16 25 H 0.06 2.50 6.70 -2.39 -0.02 2.48 16 26 H 0.03 1.44 6.93 -2.39 -0.02 1.42 16 27 H 0.00 -0.08 5.91 -2.38 -0.01 -0.10 16 28 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 29 H 0.08 2.47 6.90 -2.39 -0.02 2.45 16 30 H 0.07 2.06 6.62 -2.39 -0.02 2.05 16 31 H 0.16 3.57 6.43 -2.91 -0.02 3.56 16 32 H 0.21 3.65 8.06 -2.91 -0.02 3.63 16 33 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.10 2.16 7.14 -2.39 -0.02 2.15 16 Total: -1.00 -67.97 287.04 2.77 -65.20 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 1.02 Total: 16.32 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 5.95 Total: -18.61 kcal Atomic # 7 Polarization: -101.15 SS G_CDS: -6.08 Total: -107.23 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.88 Total: 44.32 kcal Total: -67.97 2.77 -65.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292049683.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.852 kcal (2) G-P(sol) polarization free energy of solvation -67.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds