Wall clock time and date at job start Sun Mar 29 2020 22:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50693 * 120.00202 * 2 1 4 4 N 1.46904 * 109.47255 * 124.07395 * 3 2 1 5 5 C 1.46907 * 111.00010 * 62.29434 * 4 3 2 6 6 C 1.50699 * 109.46884 * 66.04777 * 5 4 3 7 7 H 1.08007 * 119.99692 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99986 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99768 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00084 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.46957 * 89.99612 * 10 8 6 12 12 H 1.48490 * 109.47043 * 210.00044 * 10 8 6 13 13 H 1.48497 * 109.46986 * 330.00109 * 10 8 6 14 14 C 1.46902 * 110.99779 * 298.34733 * 4 3 2 15 15 C 1.50703 * 109.47272 * 288.45138 * 14 4 3 16 16 C 1.39874 * 126.03780 * 95.20838 * 15 14 4 17 17 N 1.30841 * 108.19871 * 179.97438 * 16 15 14 18 18 N 1.40083 * 108.20530 * 0.02562 * 17 16 15 19 19 C 1.46506 * 126.03554 * 179.97438 * 18 17 16 20 20 C 1.34947 * 107.92677 * 359.75849 * 18 17 16 21 21 H 1.07997 * 120.00138 * 179.97438 * 1 2 3 22 22 H 1.08007 * 119.99634 * 359.97438 * 1 2 3 23 23 H 1.07999 * 119.99510 * 180.02562 * 2 1 3 24 24 H 1.08999 * 109.47552 * 4.07694 * 3 2 1 25 25 H 1.09000 * 109.47659 * 244.07095 * 3 2 1 26 26 H 1.08998 * 109.46846 * 306.05060 * 5 4 3 27 27 H 1.08999 * 109.47184 * 186.05173 * 5 4 3 28 28 H 0.96999 * 119.99988 * 180.02562 * 9 8 6 29 29 H 1.09002 * 109.47522 * 48.45372 * 14 4 3 30 30 H 1.09005 * 109.47184 * 168.45745 * 14 4 3 31 31 H 1.07995 * 125.89855 * 0.02562 * 16 15 14 32 32 H 1.09000 * 109.46994 * 89.97337 * 19 18 17 33 33 H 1.08994 * 109.47367 * 209.97740 * 19 18 17 34 34 H 1.09001 * 109.46618 * 329.97825 * 19 18 17 35 35 H 1.08000 * 126.12331 * 180.24649 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9804 1.3411 1.1472 5 6 3.9825 0.2709 1.0541 6 6 4.8796 0.5245 -0.1299 7 1 4.7214 1.3940 -0.7508 8 6 5.9030 -0.3528 -0.4198 9 7 6.6862 -0.1312 -1.4528 10 14 6.1770 -1.8561 0.6546 11 1 5.3843 -2.9944 0.1245 12 1 7.6187 -2.2119 0.6496 13 1 5.7458 -1.5569 2.0437 14 6 2.2415 1.2615 2.4144 15 6 1.5096 2.5573 2.6514 16 6 0.1765 2.8219 2.3209 17 7 -0.0977 4.0497 2.6803 18 7 1.0541 4.6062 3.2512 19 6 1.1812 5.9643 3.7858 20 6 2.0245 3.6688 3.2262 21 1 -0.5400 -0.9353 -0.0004 22 1 -0.5400 0.9354 0.0004 23 1 1.8499 -0.9353 -0.0004 24 1 1.3576 2.1323 0.0731 25 1 2.6344 1.3951 -0.9242 26 1 3.4795 -0.6880 0.9301 27 1 4.5801 0.2525 1.9655 28 1 7.4059 -0.7486 -1.6571 29 1 1.5238 0.4425 2.3657 30 1 2.9402 1.0841 3.2320 31 1 -0.5084 2.1316 1.8510 32 1 0.9163 5.9648 4.8432 33 1 2.2094 6.3062 3.6687 34 1 0.5121 6.6323 3.2434 35 1 3.0323 3.7856 3.5967 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292063837.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:55 Heat of formation + Delta-G solvation = 111.769470 kcal Electronic energy + Delta-G solvation = -16489.088986 eV Core-core repulsion = 13911.056035 eV Total energy + Delta-G solvation = -2578.032951 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.95828 -37.41109 -33.25317 -32.87968 -32.16289 -30.40372 -28.00925 -26.90481 -25.54774 -23.17639 -21.01958 -20.81848 -19.95109 -18.69863 -16.83496 -16.40724 -15.41420 -15.07757 -14.65775 -14.50681 -14.01896 -13.78440 -13.26089 -12.90425 -12.77071 -12.54619 -12.33756 -12.06206 -11.59891 -11.39339 -10.93485 -10.79817 -10.67089 -10.45375 -10.02463 -9.80609 -9.35450 -9.19795 -8.86194 -8.55761 -8.13477 -7.27381 -6.02918 -3.99534 2.10678 2.68621 2.72717 3.05728 3.28868 3.37089 3.38626 4.43528 4.61954 5.06144 5.09106 5.14099 5.25087 5.30321 5.33045 5.46629 5.66702 5.70318 5.78716 6.03270 6.10616 6.20127 6.40105 6.48005 6.68503 6.86337 6.89450 6.99795 7.10482 7.20535 7.22314 7.65468 7.89182 7.97782 8.12009 8.69947 9.06407 9.59179 11.10372 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.029075 B = 0.006604 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.789983 B = 4238.860980 C = 4711.720781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.159 4.159 3 C 0.088 3.912 4 N -0.515 5.515 5 C 0.158 3.842 6 C -0.505 4.505 7 H 0.080 0.920 8 C 0.068 3.932 9 N -0.902 5.902 10 Si 0.873 3.127 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.267 1.267 14 C 0.123 3.877 15 C -0.213 4.213 16 C 0.053 3.947 17 N -0.309 5.309 18 N -0.384 5.384 19 C 0.106 3.894 20 C 0.069 3.931 21 H 0.087 0.913 22 H 0.091 0.909 23 H 0.109 0.891 24 H 0.063 0.937 25 H 0.093 0.907 26 H -0.011 1.011 27 H 0.027 0.973 28 H 0.263 0.737 29 H 0.038 0.962 30 H 0.070 0.930 31 H 0.177 0.823 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.914 6.185 9.891 15.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.179 4.179 3 C -0.040 4.040 4 N -0.237 5.237 5 C 0.032 3.968 6 C -0.543 4.543 7 H 0.098 0.902 8 C -0.133 4.133 9 N -0.541 5.541 10 Si 0.701 3.299 11 H -0.204 1.204 12 H -0.213 1.213 13 H -0.192 1.192 14 C -0.006 4.006 15 C -0.224 4.224 16 C -0.133 4.133 17 N -0.130 5.130 18 N -0.167 5.167 19 C -0.036 4.036 20 C -0.077 4.077 21 H 0.105 0.895 22 H 0.109 0.891 23 H 0.126 0.874 24 H 0.081 0.919 25 H 0.111 0.889 26 H 0.006 0.994 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.193 0.807 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -11.341 7.646 9.905 16.887 hybrid contribution 0.527 -2.310 0.417 2.406 sum -10.813 5.336 10.322 15.872 Atomic orbital electron populations 1.23686 0.95929 1.00797 1.04739 1.23893 0.96261 1.01418 0.96324 1.21278 0.94091 0.92362 0.96286 1.62254 1.13368 1.48441 0.99678 1.20242 0.90397 0.87995 0.98210 1.21037 1.12340 1.10451 1.10515 0.90203 1.24891 0.95749 0.97671 0.95023 1.69895 1.19034 1.37509 1.27655 0.86891 0.77483 0.83812 0.81736 1.20404 1.21261 1.19151 1.20349 0.95351 0.91379 0.93526 1.20063 0.94542 0.98227 1.09612 1.23777 0.96233 0.93680 0.99621 1.77258 1.06883 1.10622 1.18267 1.48376 1.08620 1.11678 1.48040 1.21760 1.03568 0.79275 0.99005 1.22310 0.94921 0.89089 1.01395 0.89460 0.89122 0.87350 0.91909 0.88902 0.99385 0.95516 0.92740 0.94421 0.91169 0.80655 0.91269 0.89603 0.89685 0.81023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.10 14.27 29.01 0.41 -2.69 16 2 C -0.16 -2.78 7.47 -36.03 -0.27 -3.05 16 3 C 0.09 1.69 5.48 -4.98 -0.03 1.66 16 4 N -0.52 -10.53 4.65 -238.95 -1.11 -11.64 16 5 C 0.16 3.71 3.61 -4.97 -0.02 3.70 16 6 C -0.51 -14.07 9.04 -34.44 -0.31 -14.39 16 7 H 0.08 2.44 7.36 -52.48 -0.39 2.05 16 8 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 9 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 10 Si 0.87 21.25 27.47 -169.99 -4.67 16.58 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 14 C 0.12 2.10 5.32 -4.97 -0.03 2.08 16 15 C -0.21 -3.35 4.99 -105.05 -0.52 -3.87 16 16 C 0.05 0.81 11.08 -17.36 -0.19 0.61 16 17 N -0.31 -4.82 12.58 30.63 0.39 -4.43 16 18 N -0.38 -5.22 4.01 -68.16 -0.27 -5.49 16 19 C 0.11 0.91 11.47 59.85 0.69 1.60 16 20 C 0.07 0.98 11.40 -17.23 -0.20 0.78 16 21 H 0.09 1.14 8.06 -52.49 -0.42 0.72 16 22 H 0.09 1.21 7.11 -52.48 -0.37 0.83 16 23 H 0.11 2.05 6.74 -52.49 -0.35 1.70 16 24 H 0.06 1.13 6.36 -51.93 -0.33 0.80 16 25 H 0.09 2.03 6.80 -51.93 -0.35 1.68 16 26 H -0.01 -0.27 5.68 -51.93 -0.29 -0.56 16 27 H 0.03 0.64 6.92 -51.93 -0.36 0.28 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.04 0.63 6.79 -51.93 -0.35 0.28 16 30 H 0.07 1.17 7.82 -51.93 -0.41 0.76 16 31 H 0.18 2.34 7.28 -52.49 -0.38 1.96 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.17 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 290.73 15.07 4.38 4.38 Total: -1.00 -31.93 290.73 -5.95 -37.88 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -4.87 Total: 1.12 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -0.56 Total: -11.72 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -0.23 Total: -48.24 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.93 -5.95 -37.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292063837.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.651 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds